AlfalfaGEDB | MsaG026812

M. sativa ssp. caerulea / MsaG026812

KEGG: K08789
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026812	KOM54480.1	100.000	62	0	0	1	62	447	508	5.93e-35	135

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026812	sp\|F4J6F6\|IREH1_ARATH	90.323	62	6	0	1	62	959	1020	2.76e-33	123

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026812	tr\|A0A0L9VHF3\|A0A0L9VHF3_PHAAN	100.000	62	0	0	1	62	447	508	2.83e-35	135

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000535	MsaG026812	0.806110	1.633561e-49	2.541678e-47
MsaG001188	MsaG026812	0.803433	5.884065e-49	8.602250e-47
MsaG001328	MsaG026812	0.845966	5.489778e-59	2.597021e-56
MsaG003289	MsaG026812	0.824131	1.686337e-53	4.142644e-51
MsaG003515	MsaG026812	0.854185	2.807811e-61	1.762042e-58
MsaG003717	MsaG026812	0.809612	2.965422e-50	5.016846e-48
MsaG003881	MsaG026812	0.819347	2.129726e-52	4.604305e-50
MsaG003929	MsaG026812	0.801852	1.242000e-48	1.751122e-46
MsaG004293	MsaG026812	0.801902	1.213214e-48	1.712494e-46
MsaG005346	MsaG026812	0.802713	8.273854e-49	1.189692e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026812	MtrunA17_Chr6g0478601	98.387	62	1	0	1	62	188	249	1.45e-37	130
MsaG026812	MtrunA17_Chr5g0428981	87.097	62	8	0	1	62	840	901	1.31e-33	120
MsaG026812	MtrunA17_Chr4g0018201	85.484	62	9	0	1	62	836	897	1.99e-33	120
MsaG026812	MtrunA17_Chr1g0179101	61.905	63	22	2	1	61	549	611	7.93e-19	78.6
MsaG026812	MtrunA17_Chr7g0266031	61.905	63	22	2	1	61	571	633	1.42e-18	78.2
MsaG026812	MtrunA17_Chr2g0309421	58.730	63	24	1	1	61	254	316	1.44e-18	77.8
MsaG026812	MtrunA17_Chr1g0167351	54.839	62	28	0	1	62	187	248	8.37e-18	75.9
MsaG026812	MtrunA17_Chr3g0080101	55.556	63	26	1	1	61	494	556	3.86e-17	73.9
MsaG026812	MtrunA17_Chr2g0299781	56.452	62	27	0	1	62	190	251	4.25e-17	73.9
MsaG026812	MtrunA17_Chr1g0153321	53.226	62	29	0	1	62	185	246	5.01e-17	73.6

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026812	AT3G17850.1	90.323	62	6	1	62	959	1020	2.80e-34	123
MsaG026812	AT5G62310.1	83.871	62	10	1	62	831	892	3.05e-33	120
MsaG026812	AT1G45160.1	83.871	62	10	1	62	747	808	6.69e-33	119
MsaG026812	AT1G45160.2	83.871	62	10	1	62	747	808	6.69e-33	119
MsaG026812	AT1G48490.3	85.484	62	9	1	62	905	966	3.54e-32	117
MsaG026812	AT1G48490.2	85.484	62	9	1	62	905	966	3.54e-32	117
MsaG026812	AT1G48490.1	85.484	62	9	1	62	905	966	3.54e-32	117
MsaG026812	AT1G48490.4	85.484	62	9	1	62	906	967	3.54e-32	117
MsaG026812	AT4G33080.1	56.452	62	27	1	62	171	232	2.56e-18	77.8
MsaG026812	AT4G33080.2	56.452	62	27	1	62	171	232	2.92e-18	77.4

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Find 19 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTTATTGATTGCACATGA+TGG	0.544154	5:-29451505	MsaT026812.1:CDS
ACAAGGAGTCAATGGAACGG+CGG	0.709943	5:-29451470	MsaT026812.1:CDS
AGGATGTCTAGATGAGGAAG+TGG	0.568105	5:-29451611	MsaT026812.1:CDS
ATCAAGGAACAAGGAGTCAA+TGG	0.475145	5:-29451478	MsaT026812.1:CDS
ATGGAACGGCGGCTTGGACT+TGG	0.398643	5:-29451459	MsaT026812.1:CDS
CACTTCAGCAATATAGACAC+GGG	0.629377	5:+29451588	None:intergenic
CCACTTCAGCAATATAGACA+CGG	0.586551	5:+29451587	None:intergenic
CCGTGTCTATATTGCTGAAG+TGG	0.548032	5:-29451587	MsaT026812.1:CDS
CTTGTCATGGAGTATCTCAA+TGG	0.563365	5:-29451664	None:intergenic
GAATTTAGGATGTCTAGATG+AGG	0.630517	5:-29451617	MsaT026812.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	29451447	29451680	29451447	ID=MsaG026812
Chr5	mRNA	29451447	29451680	29451447	ID=MsaT026812.1;Parent=MsaG026812
Chr5	exon	29451447	29451680	29451447	ID=MsaT026812.1.exon1;Parent=MsaT026812.1
Chr5	CDS	29451447	29451680	29451447	ID=cds.MsaT026812.1;Parent=MsaT026812.1

Gene Sequence	>MsaT026812.1 ATGGAGTATCTCAATGGTGGAGACTTGTATTCTTTACTAAGGAATTTAGGATGTCTAGATGAGGAAGTGGCCCGTGTCTATATTGCTGAAGTGGTGCTTGCATTAGAGTATTTGCATTCTCTGCATGTGGTTCATCGTGACTTGAAGCCTGACAATTTATTGATTGCACATGATGGTCACATCAAGGAACAAGGAGTCAATGGAACGGCGGCTTGGACTTGGATTAGCTTTTAA
Protein sequence	>MsaT026812.1 MEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKEQGVNGTAAWTWISF*