AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG026813

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026813 MtrunA17_Chr6g0478601 98.058 103 2 0 1 103 147 249 1.97e-66 208
MsaG026813 MtrunA17_Chr5g0428981 87.379 103 13 0 1 103 799 901 4.11e-60 198
MsaG026813 MtrunA17_Chr4g0018201 86.408 103 14 0 1 103 795 897 6.24e-60 197
MsaG026813 MtrunA17_Chr3g0135951 48.544 103 53 0 1 103 130 232 2.87e-28 107
MsaG026813 MtrunA17_Chr4g0059751 47.059 102 54 0 1 102 132 233 7.10e-28 105
MsaG026813 MtrunA17_Chr7g0245031 46.078 102 55 0 1 102 184 285 7.38e-28 105
MsaG026813 MtrunA17_Chr1g0167351 48.544 103 53 0 1 103 146 248 1.55e-27 105
MsaG026813 MtrunA17_Chr2g0299781 50.485 103 51 0 1 103 149 251 3.88e-27 103
MsaG026813 MtrunA17_Chr1g0167311 45.631 103 56 0 1 103 151 253 9.51e-26 100
MsaG026813 MtrunA17_Chr1g0183651 45.631 103 56 0 1 103 156 258 1.03e-25 100
MsaG026813 MtrunA17_Chr1g0153321 45.631 103 56 0 1 103 144 246 1.22e-25 99.8
MsaG026813 MtrunA17_Chr7g0261491 45.631 103 56 0 1 103 156 258 1.30e-25 99.8
MsaG026813 MtrunA17_Chr1g0187581 43.689 103 58 0 1 103 153 255 2.34e-25 99.0
MsaG026813 MtrunA17_Chr1g0179101 48.077 104 52 2 1 102 508 611 1.00e-23 94.7
MsaG026813 MtrunA17_Chr7g0266031 48.077 104 52 2 1 102 530 633 2.45e-23 93.6
MsaG026813 MtrunA17_Chr2g0309421 46.154 104 54 1 1 102 213 316 8.28e-23 92.0
MsaG026813 MtrunA17_Chr8g0369091 41.346 104 59 1 1 102 635 738 6.01e-22 89.7
MsaG026813 MtrunA17_Chr8g0351491 39.394 99 60 0 5 103 56 154 2.92e-21 85.5
MsaG026813 MtrunA17_Chr1g0197721 39.806 103 62 0 1 103 87 189 3.11e-21 87.4
MsaG026813 MtrunA17_Chr3g0080101 46.316 95 49 1 10 102 462 556 5.92e-21 86.7
MsaG026813 MtrunA17_Chr7g0227331 47.826 92 46 2 13 102 282 373 1.39e-20 85.5
MsaG026813 MtrunA17_Chr2g0327561 39.423 104 61 1 1 102 664 767 1.68e-20 85.5
MsaG026813 MtrunA17_Chr4g0030361 39.423 104 61 1 1 102 345 448 4.54e-20 84.3
MsaG026813 MtrunA17_Chr8g0335351 51.087 92 43 2 13 102 420 511 8.86e-20 83.2
MsaG026813 MtrunA17_Chr7g0250631 47.059 102 51 3 3 102 405 505 1.20e-19 83.2
MsaG026813 MtrunA17_Chr3g0125381 41.573 89 52 0 15 103 2 90 1.95e-19 79.7
MsaG026813 MtrunA17_Chr2g0290691 43.478 92 50 1 13 102 254 345 2.96e-19 82.0
MsaG026813 MtrunA17_Chr8g0379091 38.835 103 62 1 1 103 62 163 8.38e-19 80.5
MsaG026813 MtrunA17_Chr2g0284031 38.835 103 62 1 1 103 67 168 1.43e-18 79.7
MsaG026813 MtrunA17_Chr2g0285711 45.745 94 45 2 13 102 137 228 1.51e-18 79.7
MsaG026813 MtrunA17_Chr5g0428031 34.746 118 67 1 1 108 45 162 2.50e-18 79.0
MsaG026813 MtrunA17_Chr4g0074111 35.922 103 65 1 1 103 54 155 3.38e-18 78.6
MsaG026813 MtrunA17_Chr8g0353621 39.560 91 55 0 13 103 58 148 8.95e-18 76.3
MsaG026813 MtrunA17_Chr4g0013131 33.981 103 67 1 1 103 48 149 2.03e-17 76.6
MsaG026813 MtrunA17_Chr8g0338741 40.217 92 53 1 13 102 78 169 3.53e-17 75.9
MsaG026813 MtrunA17_Chr2g0321101 41.304 92 52 1 13 102 142 233 3.90e-17 75.9
MsaG026813 MtrunA17_Chr2g0304111 33.981 103 68 0 1 103 59 161 4.49e-17 75.5
MsaG026813 MtrunA17_Chr3g0140631 35.644 101 65 0 3 103 75 175 9.89e-17 73.9
MsaG026813 MtrunA17_Chr7g0234641 42.391 92 51 1 13 102 68 159 1.01e-16 74.3
MsaG026813 MtrunA17_Chr8g0345801 34.021 97 64 0 1 97 50 146 1.13e-16 73.2
MsaG026813 MtrunA17_Chr8g0381091 42.391 92 51 1 13 102 133 224 1.15e-16 74.3
MsaG026813 MtrunA17_Chr5g0441011 33.981 103 68 0 1 103 49 151 1.26e-16 74.3
MsaG026813 MtrunA17_Chr8g0346081 33.010 103 69 0 1 103 53 155 1.48e-16 73.9
MsaG026813 MtrunA17_Chr8g0386981 38.462 91 56 0 13 103 458 548 1.57e-16 73.9
MsaG026813 MtrunA17_Chr4g0063311 40.777 103 58 3 2 102 136 237 2.34e-16 73.6
MsaG026813 MtrunA17_Chr8g0346071 32.039 103 70 0 1 103 53 155 3.05e-16 73.2
MsaG026813 MtrunA17_Chr7g0244521 37.755 98 60 1 6 103 53 149 4.54e-16 72.8
MsaG026813 MtrunA17_Chr4g0001331 34.653 101 65 1 3 103 58 157 6.30e-16 72.4
MsaG026813 MtrunA17_Chr3g0107011 33.010 103 68 1 1 103 50 151 1.02e-15 71.6
MsaG026813 MtrunA17_Chr5g0432491 36.264 91 58 0 13 103 71 161 1.29e-15 71.2
MsaG026813 MtrunA17_Chr2g0312641 41.304 92 52 1 13 102 144 235 1.37e-15 71.2
MsaG026813 MtrunA17_Chr8g0356291 40.217 92 53 1 13 102 177 268 1.43e-15 71.2
MsaG026813 MtrunA17_Chr1g0202831 32.292 96 65 0 8 103 456 551 1.81e-15 71.2
MsaG026813 MtrunA17_Chr2g0284011 32.039 103 69 1 1 103 48 149 2.61e-15 70.5
MsaG026813 MtrunA17_Chr4g0032761 38.043 92 55 1 13 102 70 161 5.40e-15 69.7
MsaG026813 MtrunA17_Chr1g0205421 36.842 95 59 1 9 103 56 149 5.79e-15 69.7
MsaG026813 MtrunA17_Chr4g0042731 34.314 102 63 2 6 103 182 283 1.44e-14 68.6
MsaG026813 MtrunA17_Chr4g0063881 33.010 103 69 0 1 103 47 149 1.47e-14 68.6
MsaG026813 MtrunA17_Chr2g0286501 36.275 102 65 0 2 103 80 181 2.08e-14 68.2
MsaG026813 MtrunA17_Chr7g0272841 34.021 97 64 0 7 103 115 211 2.13e-14 68.2
MsaG026813 MtrunA17_Chr8g0384301 34.000 100 66 0 4 103 340 439 2.36e-14 67.8
MsaG026813 MtrunA17_Chr4g0070851 34.951 103 66 1 2 103 105 207 3.64e-14 67.0
MsaG026813 MtrunA17_Chr2g0333821 31.633 98 66 1 6 103 55 151 4.71e-14 67.0
MsaG026813 MtrunA17_Chr1g0150321 34.000 100 65 1 4 103 52 150 5.36e-14 66.6
MsaG026813 MtrunA17_Chr3g0107051 32.323 99 66 1 5 103 61 158 5.39e-14 66.6
MsaG026813 MtrunA17_Chr3g0130151 33.000 100 67 0 4 103 285 384 5.50e-14 66.6
MsaG026813 MtrunA17_Chr2g0302431 32.710 107 72 0 5 111 60 166 5.79e-14 66.6
MsaG026813 MtrunA17_Chr1g0205931 32.000 100 68 0 4 103 99 198 6.32e-14 66.6
MsaG026813 MtrunA17_Chr1g0188031 36.585 82 52 0 22 103 79 160 8.98e-14 66.2
MsaG026813 MtrunA17_Chr8g0374571 34.737 95 58 1 2 96 60 150 9.57e-14 65.9
MsaG026813 MtrunA17_Chr2g0317001 30.928 97 67 0 7 103 55 151 1.10e-13 65.9
MsaG026813 MtrunA17_Chr3g0132671 32.632 95 64 0 9 103 93 187 1.13e-13 65.9
MsaG026813 MtrunA17_Chr5g0432471 29.126 103 72 1 1 103 48 149 2.26e-13 65.1
MsaG026813 MtrunA17_Chr3g0114511 35.417 96 57 2 10 103 75 167 2.37e-13 65.1
MsaG026813 MtrunA17_Chr1g0162301 34.737 95 58 1 2 96 61 151 2.65e-13 64.7
MsaG026813 MtrunA17_Chr4g0038091 33.333 96 62 1 10 103 64 159 2.94e-13 64.7
MsaG026813 MtrunA17_Chr6g0449401 30.233 129 51 1 13 102 313 441 3.36e-13 64.7
MsaG026813 MtrunA17_Chr4g0045371 34.737 95 58 1 2 96 60 150 3.47e-13 64.3
MsaG026813 MtrunA17_Chr6g0487231 34.483 116 73 2 2 114 104 219 3.61e-13 64.3
MsaG026813 MtrunA17_Chr4g0038501 32.292 96 63 1 10 103 64 159 4.47e-13 64.3
MsaG026813 MtrunA17_Chr5g0419441 37.113 97 60 1 8 103 280 376 1.12e-12 63.2
MsaG026813 MtrunA17_Chr2g0329011 34.694 98 50 2 13 102 64 155 1.40e-12 62.8
MsaG026813 MtrunA17_Chr6g0453671 29.167 96 68 0 8 103 62 157 1.44e-12 62.8
MsaG026813 MtrunA17_Chr5g0402661 33.654 104 63 2 2 103 55 154 1.61e-12 62.4
MsaG026813 MtrunA17_Chr5g0399911 32.292 96 61 1 1 96 55 146 1.72e-12 62.4
MsaG026813 MtrunA17_Chr6g0453681 33.333 96 64 0 8 103 62 157 2.88e-12 62.0
MsaG026813 MtrunA17_Chr6g0468751 33.333 96 64 0 8 103 62 157 3.09e-12 61.6
MsaG026813 MtrunA17_Chr2g0299991 36.585 82 51 1 23 103 126 207 4.29e-12 61.2
MsaG026813 MtrunA17_Chr3g0091311 35.714 84 53 1 20 103 67 149 6.00e-12 60.5
MsaG026813 MtrunA17_Chr8g0385281 32.632 95 60 1 2 96 42 132 8.04e-12 60.5
MsaG026813 MtrunA17_Chr5g0443471 34.000 100 63 1 7 103 204 303 9.77e-12 60.5
MsaG026813 MtrunA17_Chr2g0277501 32.632 95 60 1 2 96 41 131 1.23e-11 60.1
MsaG026813 MtrunA17_Chr4g0069301 31.313 99 68 0 5 103 66 164 1.30e-11 60.1
MsaG026813 MtrunA17_Chr1g0170551 30.928 97 66 1 7 103 48 143 1.37e-11 60.1
MsaG026813 MtrunA17_Chr1g0185221 31.313 99 55 3 13 103 51 144 1.45e-11 60.1
MsaG026813 MtrunA17_Chr3g0131061 31.579 95 61 1 2 96 41 131 1.56e-11 59.7
MsaG026813 MtrunA17_Chr4g0055451 32.000 100 62 2 2 101 42 135 1.89e-11 59.3
MsaG026813 MtrunA17_Chr3g0129721 33.696 92 61 0 9 100 68 159 2.30e-11 58.9
MsaG026813 MtrunA17_Chr7g0256001 39.474 76 45 1 25 99 205 280 2.74e-11 58.9
MsaG026813 MtrunA17_Chr4g0008561 29.592 98 69 0 2 99 55 152 3.82e-11 58.5
MsaG026813 MtrunA17_Chr2g0326531 39.706 68 41 0 36 103 198 265 4.07e-11 58.5
MsaG026813 MtrunA17_Chr8g0380661 33.721 86 54 2 19 103 54 137 4.34e-11 58.2
MsaG026813 MtrunA17_Chr4g0072831 32.632 95 50 1 35 115 59 153 5.92e-11 57.8
MsaG026813 MtrunA17_Chr3g0091291 33.333 96 61 2 10 103 3 97 7.75e-11 57.0
MsaG026813 MtrunA17_Chr5g0402551 40.541 74 43 1 25 97 198 271 8.11e-11 57.8
MsaG026813 MtrunA17_Chr3g0116981 40.217 92 49 4 16 103 77 166 9.03e-11 57.4
MsaG026813 MtrunA17_Chr8g0381821 33.333 78 52 0 19 96 54 131 9.86e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026813 AT3G17850.1 91.262 103 9 0 1 103 918 1020 1.28e-61 203
MsaG026813 AT5G62310.1 87.379 103 13 0 1 103 790 892 1.21e-60 200
MsaG026813 AT1G48490.3 87.379 103 13 0 1 103 864 966 1.61e-58 194
MsaG026813 AT1G48490.2 87.379 103 13 0 1 103 864 966 1.61e-58 194
MsaG026813 AT1G48490.1 87.379 103 13 0 1 103 864 966 1.61e-58 194
MsaG026813 AT1G48490.4 87.379 103 13 0 1 103 865 967 1.61e-58 194
MsaG026813 AT1G45160.1 82.524 103 18 0 1 103 706 808 9.83e-57 189
MsaG026813 AT1G45160.2 82.524 103 18 0 1 103 706 808 1.01e-56 189
MsaG026813 AT1G30640.3 50.485 103 51 0 1 103 63 165 4.94e-31 114
MsaG026813 AT1G30640.2 50.485 103 51 0 1 103 156 258 8.94e-31 114
MsaG026813 AT1G30640.1 50.485 103 51 0 1 103 156 258 8.94e-31 114
MsaG026813 AT4G33080.1 49.515 103 52 0 1 103 130 232 1.35e-29 111
MsaG026813 AT4G33080.2 49.515 103 52 0 1 103 130 232 1.55e-29 110
MsaG026813 AT5G09890.1 47.573 103 54 0 1 103 138 240 5.50e-28 106
MsaG026813 AT5G09890.2 47.573 103 54 0 1 103 138 240 5.52e-28 106
MsaG026813 AT3G08730.1 46.078 102 55 0 1 102 170 271 1.05e-27 105
MsaG026813 AT3G08730.2 46.078 102 55 0 1 102 170 271 1.05e-27 105
MsaG026813 AT3G08720.1 46.078 102 55 0 1 102 176 277 1.10e-27 105
MsaG026813 AT3G08720.3 46.078 102 55 0 1 102 176 277 1.10e-27 105
MsaG026813 AT3G08720.4 46.078 102 55 0 1 102 176 277 1.10e-27 105
MsaG026813 AT3G08720.2 46.078 102 55 0 1 102 176 277 1.10e-27 105
MsaG026813 AT4G14350.3 48.544 103 53 0 1 103 155 257 1.41e-27 105
MsaG026813 AT4G14350.2 48.544 103 53 0 1 103 155 257 1.42e-27 105
MsaG026813 AT4G14350.1 48.544 103 53 0 1 103 155 257 1.42e-27 105
MsaG026813 AT4G14350.4 48.544 103 53 0 1 103 155 257 1.42e-27 105
MsaG026813 AT2G20470.3 46.602 103 55 0 1 103 160 262 5.30e-27 103
MsaG026813 AT2G20470.2 46.602 103 55 0 1 103 160 262 5.86e-27 103
MsaG026813 AT2G20470.1 46.602 103 55 0 1 103 160 262 5.86e-27 103
MsaG026813 AT3G23310.1 46.602 103 55 0 1 103 156 258 1.67e-26 102
MsaG026813 AT1G03920.2 46.602 103 55 0 1 103 60 162 2.38e-26 101
MsaG026813 AT1G03920.1 46.602 103 55 0 1 103 173 275 3.68e-26 101
MsaG026813 AT1G03920.3 46.602 103 55 0 1 103 173 275 3.68e-26 101
MsaG026813 AT2G19400.1 49.515 103 52 0 1 103 141 243 8.33e-26 100
MsaG026813 AT5G04510.3 39.806 103 62 0 1 103 80 182 5.06e-24 93.6
MsaG026813 AT5G04510.2 39.806 103 62 0 1 103 80 182 1.64e-23 93.6
MsaG026813 AT5G04510.1 39.806 103 62 0 1 103 80 182 2.46e-23 93.6
MsaG026813 AT3G10540.1 40.777 103 61 0 1 103 81 183 2.86e-23 93.6
MsaG026813 AT3G52890.2 50.538 93 44 2 12 102 585 677 4.25e-23 93.2
MsaG026813 AT3G52890.4 50.538 93 44 2 12 102 585 677 4.25e-23 93.2
MsaG026813 AT3G52890.1 50.538 93 44 2 12 102 585 677 4.25e-23 93.2
MsaG026813 AT3G52890.3 50.538 93 44 2 12 102 585 677 4.25e-23 93.2
MsaG026813 AT2G36350.1 44.231 104 56 1 1 102 595 698 1.04e-21 89.4
MsaG026813 AT1G16440.1 42.308 104 58 1 1 102 151 254 1.06e-21 89.0
MsaG026813 AT3G27580.2 44.118 102 54 2 3 102 221 321 2.54e-21 88.2
MsaG026813 AT3G27580.1 44.118 102 54 2 3 102 221 321 2.54e-21 88.2
MsaG026813 AT5G58140.3 40.385 104 60 1 1 102 613 716 4.06e-21 87.4
MsaG026813 AT5G58140.6 40.385 104 60 1 1 102 613 716 4.07e-21 87.4
MsaG026813 AT5G58140.7 40.385 104 60 1 1 102 613 716 4.07e-21 87.4
MsaG026813 AT5G58140.5 40.385 104 60 1 1 102 613 716 4.07e-21 87.4
MsaG026813 AT5G58140.2 40.385 104 60 1 1 102 613 716 4.07e-21 87.4
MsaG026813 AT5G58140.1 40.385 104 60 1 1 102 613 716 4.07e-21 87.4
MsaG026813 AT1G79250.1 46.739 92 47 1 13 102 194 285 4.41e-21 87.4
MsaG026813 AT1G79250.3 46.739 92 47 1 13 102 194 285 4.41e-21 87.4
MsaG026813 AT1G79250.2 46.739 92 47 1 13 102 194 285 4.41e-21 87.4
MsaG026813 AT1G79250.4 46.739 92 47 1 13 102 194 285 4.41e-21 87.4
MsaG026813 AT2G45490.2 42.857 91 52 0 13 103 70 160 6.19e-21 84.7
MsaG026813 AT2G45490.1 42.857 91 52 0 13 103 70 160 9.32e-21 84.7
MsaG026813 AT2G44830.2 52.174 92 42 2 13 102 411 502 2.88e-20 85.1
MsaG026813 AT2G44830.3 52.174 92 42 2 13 102 411 502 2.88e-20 85.1
MsaG026813 AT2G44830.1 52.174 92 42 2 13 102 411 502 2.88e-20 85.1
MsaG026813 AT5G03640.2 45.098 102 54 1 3 102 579 680 3.62e-20 84.7
MsaG026813 AT5G03640.1 45.098 102 54 1 3 102 579 680 3.62e-20 84.7
MsaG026813 AT4G24400.1 36.752 117 64 1 1 107 45 161 8.24e-20 83.6
MsaG026813 AT4G24400.2 36.752 117 64 1 1 107 45 161 1.13e-19 83.2
MsaG026813 AT3G12690.1 46.739 92 47 1 13 102 233 324 1.63e-19 82.8
MsaG026813 AT3G12690.3 46.739 92 47 1 13 102 233 324 1.63e-19 82.8
MsaG026813 AT3G12690.2 46.739 92 47 1 13 102 233 324 1.63e-19 82.8
MsaG026813 AT3G45780.2 40.385 104 60 1 1 102 699 802 2.05e-19 82.8
MsaG026813 AT3G45780.1 40.385 104 60 1 1 102 699 802 2.05e-19 82.8
MsaG026813 AT4G26610.1 44.565 92 49 2 13 102 171 262 2.57e-19 82.4
MsaG026813 AT5G47750.1 46.739 92 47 2 13 102 239 330 2.84e-19 82.4
MsaG026813 AT5G55910.2 44.565 92 49 2 13 102 157 248 3.35e-19 82.0
MsaG026813 AT5G55910.1 44.565 92 49 2 13 102 157 248 3.35e-19 82.0
MsaG026813 AT2G25090.1 35.644 101 65 0 3 103 54 154 1.60e-18 80.1
MsaG026813 AT4G18700.1 37.864 103 63 1 1 103 62 163 2.20e-18 79.7
MsaG026813 AT1G29230.1 36.893 103 64 1 1 103 110 211 2.56e-18 79.7
MsaG026813 AT5G40030.1 42.157 102 56 2 3 102 153 253 5.51e-18 78.6
MsaG026813 AT5G45810.1 36.893 103 64 1 1 103 64 165 7.42e-18 78.2
MsaG026813 AT3G20830.1 44.048 84 45 1 21 102 83 166 8.82e-18 77.8
MsaG026813 AT2G34650.1 43.478 92 50 1 13 102 128 219 2.05e-17 77.0
MsaG026813 AT1G30270.2 33.010 103 69 0 1 103 67 169 3.10e-17 76.3
MsaG026813 AT1G30270.1 33.010 103 69 0 1 103 67 169 3.14e-17 76.3
MsaG026813 AT3G61960.2 35.052 97 63 0 1 97 45 141 3.87e-17 76.3
MsaG026813 AT3G61960.1 35.052 97 63 0 1 97 45 141 3.90e-17 76.3
MsaG026813 AT2G26700.1 43.478 92 50 2 13 102 137 228 4.99e-17 75.9
MsaG026813 AT5G25110.1 36.634 101 63 1 3 103 81 180 7.15e-17 75.5
MsaG026813 AT5G10930.1 36.893 103 64 1 1 103 49 150 9.00e-17 75.1
MsaG026813 AT3G44610.1 40.217 92 53 1 13 102 127 218 9.16e-17 75.1
MsaG026813 AT2G26980.1 32.039 103 70 0 1 103 50 152 1.21e-16 74.3
MsaG026813 AT2G26980.3 32.039 103 70 0 1 103 50 152 1.39e-16 74.3
MsaG026813 AT2G26980.4 32.039 103 70 0 1 103 60 162 1.46e-16 74.3
MsaG026813 AT5G21222.1 32.039 103 70 0 1 103 49 151 1.61e-16 74.3
MsaG026813 AT5G21222.2 32.039 103 70 0 1 103 49 151 1.61e-16 74.3
MsaG026813 AT5G21222.4 32.039 103 70 0 1 103 49 151 1.61e-16 74.3
MsaG026813 AT5G21222.3 32.039 103 70 0 1 103 49 151 1.61e-16 74.3
MsaG026813 AT5G18700.1 39.604 101 58 1 3 103 39 136 2.09e-16 74.3
MsaG026813 AT5G45820.1 36.735 98 61 1 6 103 53 149 2.49e-16 73.9
MsaG026813 AT1G01140.1 33.981 103 68 0 1 103 55 157 2.64e-16 73.6
MsaG026813 AT1G01140.2 33.981 103 68 0 1 103 55 157 2.65e-16 73.6
MsaG026813 AT1G01140.3 33.981 103 68 0 1 103 55 157 2.66e-16 73.6
MsaG026813 AT2G26980.2 32.039 103 70 0 1 103 50 152 2.82e-16 72.4
MsaG026813 AT5G35410.2 33.981 103 68 0 1 103 47 149 3.02e-16 73.6
MsaG026813 AT5G35410.1 33.981 103 68 0 1 103 47 149 3.37e-16 73.6
MsaG026813 AT5G21326.1 34.951 103 67 0 1 103 49 151 4.89e-16 72.8
MsaG026813 AT2G26980.5 32.039 103 70 0 1 103 50 152 5.66e-16 72.8
MsaG026813 AT4G32830.1 35.644 101 65 0 3 103 69 169 6.42e-16 72.0
MsaG026813 AT2G25880.1 35.644 101 65 0 3 103 63 163 6.95e-16 71.6
MsaG026813 AT2G25880.4 35.644 101 65 0 3 103 76 176 8.34e-16 71.6
MsaG026813 AT4G30960.1 35.714 98 62 1 6 103 65 161 1.02e-15 72.0
MsaG026813 AT2G25880.3 35.644 101 65 0 3 103 124 224 1.09e-15 71.6
MsaG026813 AT5G01810.1 34.951 103 66 1 1 103 48 149 1.13e-15 72.0
MsaG026813 AT5G01810.2 34.951 103 66 1 1 103 48 149 1.13e-15 72.0
MsaG026813 AT5G01810.3 34.951 103 66 1 1 103 48 149 1.31e-15 71.6
MsaG026813 AT2G34180.1 36.792 106 61 2 3 103 90 194 2.30e-15 71.2
MsaG026813 AT1G54960.1 34.021 97 64 0 7 103 115 211 3.18e-15 70.9
MsaG026813 AT1G54960.2 34.021 97 64 0 7 103 115 211 3.18e-15 70.9
MsaG026813 AT3G01090.3 36.458 96 61 0 8 103 62 157 4.87e-15 70.1
MsaG026813 AT3G01090.1 36.458 96 61 0 8 103 62 157 4.87e-15 70.1
MsaG026813 AT3G01090.2 36.458 96 61 0 8 103 85 180 5.15e-15 70.1
MsaG026813 AT1G53700.1 39.796 98 57 1 7 102 136 233 5.39e-15 70.1
MsaG026813 AT1G63700.1 35.165 91 59 0 13 103 450 540 8.97e-15 69.3
MsaG026813 AT1G63700.2 35.165 91 59 0 13 103 450 540 8.97e-15 69.3
MsaG026813 AT2G30360.1 31.633 98 67 0 6 103 63 160 1.04e-14 69.3
MsaG026813 AT1G14000.1 35.294 102 62 2 6 103 201 302 1.24e-14 68.9
MsaG026813 AT3G14370.1 36.735 98 60 1 7 102 130 227 1.51e-14 68.9
MsaG026813 AT1G49180.2 31.313 99 68 0 2 100 43 141 2.32e-14 68.2
MsaG026813 AT1G09000.2 32.990 97 65 0 7 103 116 212 2.48e-14 68.2
MsaG026813 AT1G09000.1 32.990 97 65 0 7 103 116 212 2.50e-14 68.2
MsaG026813 AT1G49180.1 31.313 99 68 0 2 100 43 141 2.53e-14 68.2
MsaG026813 AT1G53570.6 32.000 100 68 0 4 103 255 354 6.22e-14 67.0
MsaG026813 AT1G53570.7 32.000 100 68 0 4 103 255 354 6.22e-14 67.0
MsaG026813 AT1G53570.4 32.000 100 68 0 4 103 255 354 6.34e-14 67.0
MsaG026813 AT1G53570.2 32.000 100 68 0 4 103 255 354 6.34e-14 67.0
MsaG026813 AT1G53570.3 32.000 100 68 0 4 103 255 354 6.34e-14 67.0
MsaG026813 AT1G53570.1 32.000 100 68 0 4 103 255 354 6.34e-14 67.0
MsaG026813 AT1G51170.1 37.349 83 50 1 22 102 85 167 8.31e-14 66.6
MsaG026813 AT5G63650.1 34.737 95 58 1 2 96 41 131 8.42e-14 66.6
MsaG026813 AT3G29160.3 35.417 96 62 0 8 103 63 158 9.64e-14 66.2
MsaG026813 AT3G29160.1 35.417 96 62 0 8 103 63 158 1.05e-13 66.2
MsaG026813 AT3G29160.2 35.417 96 62 0 8 103 63 158 1.05e-13 66.2
MsaG026813 AT3G53930.1 32.653 98 66 0 2 99 56 153 1.32e-13 66.2
MsaG026813 AT3G53930.2 32.653 98 66 0 2 99 56 153 1.32e-13 66.2
MsaG026813 AT5G58380.1 32.039 103 69 1 1 103 48 149 1.60e-13 65.9
MsaG026813 AT5G66880.1 34.737 95 58 1 2 96 59 149 1.70e-13 65.5
MsaG026813 AT5G66880.2 34.737 95 58 1 2 96 59 149 1.70e-13 65.5
MsaG026813 AT3G23000.1 34.579 107 64 2 3 103 58 164 1.84e-13 65.5
MsaG026813 AT3G50500.1 34.737 95 58 1 2 96 60 150 2.57e-13 65.1
MsaG026813 AT3G50500.2 34.737 95 58 1 2 96 60 150 2.61e-13 65.1
MsaG026813 AT4G14580.1 36.585 82 52 0 22 103 79 160 2.76e-13 65.1
MsaG026813 AT3G06030.1 31.959 97 66 0 7 103 115 211 2.96e-13 65.1
MsaG026813 AT3G07980.2 31.313 99 66 1 7 103 61 159 3.72e-13 65.1
MsaG026813 AT3G07980.1 31.313 99 66 1 7 103 61 159 3.72e-13 65.1
MsaG026813 AT4G33950.1 34.737 95 58 1 2 96 58 148 4.09e-13 64.7
MsaG026813 AT1G30270.3 40.580 69 41 0 35 103 4 72 4.39e-13 64.3
MsaG026813 AT5G56580.1 34.483 116 70 3 2 114 109 221 4.90e-13 64.3
MsaG026813 AT3G15220.1 31.868 91 62 0 13 103 61 151 5.23e-13 64.3
MsaG026813 AT4G13000.1 34.653 101 64 1 4 102 60 160 6.17e-13 63.9
MsaG026813 AT5G39440.1 33.333 102 66 1 4 103 56 157 6.33e-13 64.3
MsaG026813 AT1G48260.1 33.010 103 69 0 1 103 47 149 8.25e-13 63.9
MsaG026813 AT1G69220.2 37.113 97 60 1 8 103 263 359 9.04e-13 63.9
MsaG026813 AT1G69220.1 37.113 97 60 1 8 103 290 386 9.07e-13 63.9
MsaG026813 AT3G13530.1 31.132 106 67 2 4 103 54 159 9.44e-13 63.9
MsaG026813 AT3G45240.3 37.500 96 58 1 10 103 159 254 1.09e-12 63.5
MsaG026813 AT3G45240.2 37.500 96 58 1 10 103 159 254 1.09e-12 63.5
MsaG026813 AT3G45240.1 37.500 96 58 1 10 103 159 254 1.09e-12 63.5
MsaG026813 AT4G29810.3 33.010 103 68 1 2 103 114 216 1.36e-12 63.2
MsaG026813 AT2G37840.1 31.250 96 66 0 2 97 48 143 1.60e-12 63.2
MsaG026813 AT4G33950.2 34.737 95 58 1 2 96 58 148 1.75e-12 62.8
MsaG026813 AT4G29810.1 33.010 103 68 1 2 103 105 207 1.95e-12 62.8
MsaG026813 AT4G29810.2 33.010 103 68 1 2 103 114 216 1.98e-12 62.8
MsaG026813 AT5G60550.1 33.333 102 66 1 4 103 152 253 2.36e-12 62.4
MsaG026813 AT3G45790.1 32.323 99 57 2 9 97 136 234 2.37e-12 62.4
MsaG026813 AT1G53165.1 31.868 91 62 0 13 103 61 151 2.56e-12 62.4
MsaG026813 AT1G53165.2 31.868 91 62 0 13 103 61 151 2.56e-12 62.4
MsaG026813 AT1G53165.3 31.868 91 62 0 13 103 61 151 2.57e-12 62.4
MsaG026813 AT4G40010.1 31.731 104 65 2 2 103 41 140 2.78e-12 62.0
MsaG026813 AT4G18950.2 35.106 94 58 1 13 103 203 296 4.53e-12 61.6
MsaG026813 AT4G18950.1 35.106 94 58 1 13 103 203 296 4.58e-12 61.6
MsaG026813 AT4G26070.1 31.683 101 68 1 4 103 105 205 5.29e-12 61.2
MsaG026813 AT5G01820.1 34.118 85 55 1 9 93 66 149 5.79e-12 61.2
MsaG026813 AT4G26070.5 31.683 101 68 1 4 103 92 192 6.80e-12 60.8
MsaG026813 AT1G53570.5 31.522 92 63 0 4 95 255 346 6.91e-12 61.2
MsaG026813 AT4G26070.2 31.683 101 68 1 4 103 105 205 7.94e-12 60.8
MsaG026813 AT4G26070.3 31.683 101 68 1 4 103 105 205 7.94e-12 60.8
MsaG026813 AT3G25250.1 44.444 63 33 1 42 102 101 163 8.05e-12 60.8
MsaG026813 AT5G08590.1 32.632 95 60 1 2 96 41 131 8.16e-12 60.8
MsaG026813 AT5G55090.1 36.667 90 52 3 13 97 47 136 8.23e-12 60.8
MsaG026813 AT4G26070.4 31.683 101 68 1 4 103 104 204 8.32e-12 60.8
MsaG026813 AT4G26890.1 37.500 96 55 2 13 103 46 141 8.38e-12 60.8
MsaG026813 AT1G32320.1 27.778 126 78 1 1 113 78 203 8.58e-12 60.5
MsaG026813 AT5G55090.2 36.667 90 52 3 13 97 109 198 1.01e-11 60.8
MsaG026813 AT1G73690.1 31.373 102 68 2 3 103 48 148 1.49e-11 60.1
MsaG026813 AT1G50240.3 31.959 97 65 1 7 103 47 142 2.14e-11 59.7
MsaG026813 AT1G50240.2 31.959 97 65 1 7 103 47 142 2.14e-11 59.7
MsaG026813 AT1G10940.1 30.526 95 62 1 2 96 41 131 2.73e-11 59.3
MsaG026813 AT5G66850.2 29.592 98 68 1 7 103 390 487 3.99e-11 58.9
MsaG026813 AT5G66850.1 29.592 98 68 1 7 103 390 487 4.01e-11 58.9
MsaG026813 AT3G17510.1 32.990 97 63 1 9 103 62 158 4.28e-11 58.9
MsaG026813 AT2G23030.1 33.684 95 59 1 2 96 41 131 4.41e-11 58.9
MsaG026813 AT1G76040.3 33.000 100 66 1 1 99 148 247 5.11e-11 58.5
MsaG026813 AT1G76040.2 33.000 100 66 1 1 99 148 247 5.18e-11 58.5
MsaG026813 AT1G60940.1 29.474 95 63 1 2 96 41 131 6.01e-11 58.5
MsaG026813 AT1G60940.2 29.474 95 63 1 2 96 41 131 6.01e-11 58.5
MsaG026813 AT1G70430.1 31.373 102 68 1 4 103 53 154 6.91e-11 58.5
MsaG026813 AT1G70430.4 31.373 102 68 1 4 103 53 154 6.91e-11 58.5
MsaG026813 AT1G70430.3 31.373 102 68 1 4 103 53 154 6.93e-11 58.5
MsaG026813 AT1G18040.1 33.333 102 66 2 3 103 49 149 7.38e-11 58.2
MsaG026813 AT1G78290.3 32.632 95 60 1 2 96 41 131 9.92e-11 57.8
MsaG026813 AT1G78290.2 32.632 95 60 1 2 96 41 131 9.92e-11 57.8

Find 22 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTTTACTAAGGAATTT+AGG 0.215618 5:-29456291 MsaT026813.1:CDS
ATGGAACGGCGGCTTGGACT+TGG 0.398643 5:-29456119 MsaT026813.1:CDS
TGTGCAATCAATAAATTGTC+AGG 0.449853 5:+29456171 None:intergenic
ATCAAGGAACAAGGAGTCAA+TGG 0.475145 5:-29456138 MsaT026813.1:CDS
GAGACTTGTATTCTTTACTA+AGG 0.491494 5:-29456299 MsaT026813.1:CDS
GAGTCAATGGAACGGCGGCT+TGG 0.539030 5:-29456125 MsaT026813.1:CDS
AATTTATTGATTGCACATGA+TGG 0.544154 5:-29456165 MsaT026813.1:CDS
CCGTGTCTATATTGCTGAAG+TGG 0.548032 5:-29456247 MsaT026813.1:CDS
TGCTTTCTACAACATTCTTG+CGG 0.560038 5:+29456436 None:intergenic
CTTGTCATGGAGTATCTCAA+TGG 0.563365 5:-29456324 MsaT026813.1:CDS
AGGATGTCTAGATGAGGAAG+TGG 0.568105 5:-29456271 MsaT026813.1:CDS
GTATTTGCATTCTCTACATG+TGG 0.570660 5:-29456211 MsaT026813.1:CDS
TGTTGTAGAAAGCATATTAG+CGG 0.571152 5:-29456427 MsaT026813.1:CDS
TGCACATGATGGTCACATCA+AGG 0.576319 5:-29456154 MsaT026813.1:CDS
TGAGAACTTATATCTTGTCA+TGG 0.583665 5:-29456337 MsaT026813.1:CDS
CCACTTCAGCAATATAGACA+CGG 0.586551 5:+29456247 None:intergenic
CACTTCAGCAATATAGACAC+GGG 0.629377 5:+29456248 None:intergenic
GAATTTAGGATGTCTAGATG+AGG 0.630517 5:-29456277 MsaT026813.1:CDS
GTCATGGAGTATCTCAATGG+TGG 0.648555 5:-29456321 MsaT026813.1:CDS
GATGGTCACATCAAGGAACA+AGG 0.649984 5:-29456147 MsaT026813.1:CDS
GGAACAAGGAGTCAATGGAA+CGG 0.698405 5:-29456133 MsaT026813.1:CDS
ACAAGGAGTCAATGGAACGG+CGG 0.709943 5:-29456130 MsaT026813.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 29456107 29456463 29456107 ID=MsaG026813
Chr5 mRNA 29456107 29456463 29456107 ID=MsaT026813.1;Parent=MsaG026813
Chr5 exon 29456107 29456463 29456107 ID=MsaT026813.1.exon1;Parent=MsaT026813.1
Chr5 CDS 29456107 29456463 29456107 ID=cds.MsaT026813.1;Parent=MsaT026813.1
Gene Sequence

>MsaT026813.1

ATGATCCGCAAGAATGTTGTAGAAAGCATATTAGCGGAACGTGATATCTTAATTACAGTGCGCAATCCTTTTGTGGTTCGATTTTTCTATTCTTTCACATGTCGTGAGAACTTATATCTTGTCATGGAGTATCTCAATGGTGGAGACTTGTATTCTTTACTAAGGAATTTAGGATGTCTAGATGAGGAAGTGGCCCGTGTCTATATTGCTGAAGTGGTGCTTGCATTAGAGTATTTGCATTCTCTACATGTGGTTCATCGTGACTTGAAGCCTGACAATTTATTGATTGCACATGATGGTCACATCAAGGAACAAGGAGTCAATGGAACGGCGGCTTGGACTTGGATTAGCTTTTAA
Protein sequence

>MsaT026813.1

MIRKNVVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKEQGVNGTAAWTWISF*