AlfalfaGEDB | MsaG026842

M. sativa ssp. caerulea / MsaG026842

KEGG: K15032
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026842	XP_039690537.1	96.517	201	7	0	1	201	106	306	1.22e-133	387

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026842	sp\|Q84X53\|MTEF1_ARATH	62.687	201	74	1	1	200	82	282	2.61e-82	249

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026842	tr\|A0A396HQ05\|A0A396HQ05_MEDTR	96.517	201	7	0	1	201	106	306	5.81e-134	387

TFs/TRs:

Gene ID	Type	Classification
MsaG026842	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000004	MsaG026842	0.823047	3.016723e-53	7.196121e-51
MsaG000033	MsaG026842	0.812505	7.047657e-51	1.279829e-48
MsaG000535	MsaG026842	0.860138	5.002194e-63	3.910096e-60
MsaG000680	MsaG026842	0.813020	5.443490e-51	1.001268e-48
MsaG001029	MsaG026842	0.827862	2.211924e-54	6.025339e-52
MsaG000977	MsaG026842	0.811484	1.173305e-50	2.077675e-48
MsaG001669	MsaG026842	0.823247	2.709915e-53	6.499379e-51
MsaG004514	MsaG026842	0.828268	1.767732e-54	4.870457e-52
MsaG005295	MsaG026842	0.830871	4.143457e-55	1.229446e-52
MsaG005297	MsaG026842	0.831538	2.846125e-55	8.609758e-53
MsaG005372	MsaG026842	0.820881	9.521377e-53	2.143482e-50
MsaG005540	MsaG026842	0.826840	3.877582e-54	1.026438e-51
MsaG005683	MsaG026842	0.800934	1.911431e-48	2.639387e-46
MsaG005960	MsaG026842	0.824592	1.315270e-53	3.271869e-51
MsaG006255	MsaG026842	0.848044	1.489449e-59	7.554550e-57
MsaG006261	MsaG026842	0.850634	2.852538e-60	1.580194e-57
MsaG006314	MsaG026842	0.850945	2.332979e-60	1.306332e-57
MsaG006729	MsaG026842	0.802658	8.491585e-49	1.219516e-46
MsaG006783	MsaG026842	0.823706	2.119452e-53	5.147105e-51
MsaG008029	MsaG026842	0.815948	1.233892e-51	2.443233e-49
MsaG008109	MsaG026842	0.801183	1.700881e-48	2.361910e-46
MsaG008363	MsaG026842	0.809212	3.609794e-50	6.048067e-48
MsaG008433	MsaG026842	0.818337	3.603994e-52	7.587889e-50
MsaG008929	MsaG026842	0.828054	1.988723e-54	5.446674e-52
MsaG011526	MsaG026842	0.800873	1.967087e-48	2.712498e-46
MsaG012163	MsaG026842	0.803441	5.860461e-49	8.569495e-47
MsaG012179	MsaG026842	0.816321	1.019366e-51	2.037686e-49
MsaG012282	MsaG026842	0.881452	5.033484e-70	9.722661e-67
MsaG012285	MsaG026842	0.858162	1.943952e-62	1.410213e-59
MsaG012308	MsaG026842	0.801604	1.395528e-48	1.956513e-46
MsaG015214	MsaG026842	0.813337	4.641718e-51	8.605480e-49
MsaG015707	MsaG026842	0.821007	8.912990e-53	2.013275e-50
MsaG015897	MsaG026842	0.800544	2.293448e-48	3.139230e-46
MsaG016153	MsaG026842	0.823742	2.079151e-53	5.054020e-51
MsaG017258	MsaG026842	0.803965	4.567085e-49	6.759872e-47
MsaG017365	MsaG026842	0.829287	1.004576e-54	2.848406e-52
MsaG017397	MsaG026842	0.807636	7.800595e-50	1.258352e-47
MsaG018110	MsaG026842	0.829911	7.097258e-55	2.048739e-52
MsaG018498	MsaG026842	0.802655	8.506986e-49	1.221621e-46
MsaG018834	MsaG026842	0.833192	1.113010e-55	3.533611e-53
MsaG019409	MsaG026842	0.821739	6.052083e-53	1.393771e-50
MsaG019714	MsaG026842	0.825255	9.189510e-54	2.327850e-51
MsaG019924	MsaG026842	0.801928	1.198709e-48	1.692973e-46
MsaG020005	MsaG026842	0.820672	1.063258e-52	2.380296e-50
MsaG020080	MsaG026842	0.819830	1.654409e-52	3.622111e-50
MsaG020596	MsaG026842	0.821776	5.934386e-53	1.367968e-50
MsaG021683	MsaG026842	0.803642	5.326492e-49	7.824793e-47
MsaG023608	MsaG026842	0.810038	2.402856e-50	4.107204e-48
MsaG023743	MsaG026842	0.804167	4.149262e-49	6.170203e-47
MsaG023790	MsaG026842	0.814534	2.535332e-51	4.843648e-49
MsaG023831	MsaG026842	0.814756	2.264919e-51	4.351390e-49
MsaG026842	MsaG027092	0.844262	1.577043e-58	7.053033e-56
MsaG026842	MsaG027881	0.839622	2.619443e-57	1.010450e-54
MsaG026842	MsaG029086	0.805949	1.765372e-49	2.736323e-47
MsaG026842	MsaG029391	0.802524	9.047327e-49	1.295341e-46
MsaG026842	MsaG029537	0.828297	1.739262e-54	4.795939e-52
MsaG026842	MsaG031043	0.831740	2.539468e-55	7.728078e-53
MsaG026842	MsaG032783	0.801326	1.590494e-48	2.215814e-46
MsaG026842	MsaG033324	0.810183	2.237590e-50	3.838118e-48
MsaG026842	MsaG035233	0.810673	1.755419e-50	3.047309e-48
MsaG026842	MsaG035381	0.808929	4.146260e-50	6.900198e-48
MsaG026842	MsaG036109	0.831382	3.107700e-55	9.358159e-53
MsaG026842	MsaG039051	0.827063	3.430588e-54	9.137834e-52
MsaG026842	MsaG039197	0.813249	4.852269e-51	8.976082e-49
MsaG026842	MsaG039895	0.814644	2.397083e-51	4.592281e-49
MsaG026842	MsaG040013	0.827274	3.055947e-54	8.188404e-52
MsaG026842	MsaG040428	0.863006	6.720015e-64	5.866522e-61
MsaG026842	MsaG041237	0.818356	3.568329e-52	7.516543e-50
MsaG026842	MsaG041905	0.840317	1.729474e-57	6.819097e-55
MsaG026842	MsaG042146	0.804294	3.905288e-49	5.824647e-47
MsaG026842	MsaG043012	0.816269	1.047100e-51	2.090341e-49
MsaG026842	MsaG044337	0.849710	5.161883e-60	2.770204e-57
MsaG026842	MsaG044663	0.808701	4.637901e-50	7.676208e-48
MsaG026842	MsaG044808	0.810379	2.030241e-50	3.499355e-48
MsaG026842	MsaG045015	0.849030	7.965926e-60	4.176956e-57
MsaG026842	MsaG045598	0.824782	1.187614e-53	2.969662e-51
MsaG026842	MsaG046244	0.803166	6.678848e-49	9.704288e-47
MsaG026842	MsaG046155	0.810254	2.159876e-50	3.711393e-48
MsaG026842	MsaG046216	0.813304	4.719974e-51	8.743137e-49
MsaG026842	MsaG047031	0.855732	1.003170e-61	6.654465e-59
MsaG026842	MsaG003846	0.800861	1.977699e-48	2.726430e-46
MsaG026842	MsaG003540	0.831930	2.280297e-55	6.977995e-53
MsaG026842	MsaG009515	0.815179	1.826802e-51	3.547334e-49
MsaG026842	MsaG010137	0.818647	3.067264e-52	6.510196e-50
MsaG026842	MsaG014588	0.843304	2.838518e-58	1.230786e-55
MsaG026842	MsaG014403	0.815452	1.589292e-51	3.107622e-49
MsaG026842	MsaG022828	0.821270	7.756182e-53	1.764218e-50
MsaG026842	MsaG021114	0.808770	4.483812e-50	7.433361e-48
MsaG026842	MsaG030863	0.829890	7.178730e-55	2.071064e-52
MsaG026842	MsaG032525	0.820912	9.368694e-53	2.110861e-50
MsaG026842	MsaG031311	0.822145	4.878325e-53	1.135719e-50
MsaG026842	MsaG030553	0.842427	4.842417e-58	2.041550e-55
MsaG026842	MsaG033360	0.804200	4.082982e-49	6.076387e-47
MsaG026842	MsaG033470	0.827982	2.070233e-54	5.658410e-52
MsaG026842	MsaG030744	0.826156	5.632552e-54	1.462989e-51
MsaG026842	MsaG036760	0.837348	1.005043e-56	3.613063e-54
MsaG026842	MsaG037678	0.817747	4.892877e-52	1.014570e-49
MsaG026842	MsaG036926	0.807782	7.263366e-50	1.175852e-47
MsaG026842	MsaG035322	0.817257	6.299053e-52	1.289893e-49
MsaG026842	MsaG038027	0.806627	1.272319e-49	2.004061e-47
MsaG026842	MsaG040703	0.808837	4.338271e-50	7.203798e-48
MsaG026842	MsaG035497	0.817191	6.518466e-52	1.332527e-49
MsaG026842	MsaG043366	0.836744	1.431699e-56	5.053381e-54
MsaG026842	MsaG043822	0.817474	5.631436e-52	1.159620e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026842	MtrunA17_Chr5g0417641	96.517	201	7	0	1	201	106	306	1.12e-137	387
MsaG026842	MtrunA17_Chr2g0304101	49.189	185	94	0	3	187	120	304	7.98e-57	182
MsaG026842	MtrunA17_Chr2g0311181	40.838	191	104	3	3	191	120	303	2.46e-43	147
MsaG026842	MtrunA17_Chr7g0250261	37.113	194	111	4	8	191	91	283	1.78e-30	113
MsaG026842	MtrunA17_Chr0c29g0494001	37.113	194	111	4	8	191	91	283	1.78e-30	113
MsaG026842	MtrunA17_Chr2g0294671	33.862	189	119	5	1	188	300	483	1.14e-23	97.4
MsaG026842	MtrunA17_Chr5g0445491	30.636	173	117	1	1	170	279	451	2.25e-20	88.2
MsaG026842	MtrunA17_Chr3g0094341	35.938	128	73	3	3	128	82	202	1.14e-18	80.9
MsaG026842	MtrunA17_Chr6g0448821	28.125	192	134	3	3	192	172	361	2.90e-18	81.6
MsaG026842	MtrunA17_Chr4g0043941	27.513	189	135	1	1	187	130	318	3.93e-16	75.5
MsaG026842	MtrunA17_Chr4g0034981	26.904	197	139	3	1	194	398	592	9.10e-15	72.0
MsaG026842	MtrunA17_Chr1g0212691	37.838	111	64	2	83	191	347	454	2.16e-14	70.9
MsaG026842	MtrunA17_Chr5g0428941	32.787	122	77	2	83	200	379	499	1.07e-12	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026842	AT2G03050.1	62.687	201	74	1	1	200	81	281	2.13e-83	249
MsaG026842	AT2G03050.2	62.687	201	74	1	1	200	82	282	2.65e-83	249
MsaG026842	AT2G34620.1	45.078	193	106	0	1	193	104	296	2.12e-54	176
MsaG026842	AT2G36000.2	40.526	190	108	2	3	191	126	311	7.11e-41	141
MsaG026842	AT2G36000.1	40.526	190	108	2	3	191	126	311	9.33e-41	141
MsaG026842	AT3G18870.1	36.458	192	116	3	3	191	84	272	3.62e-31	115
MsaG026842	AT1G78930.1	34.343	198	122	3	1	194	388	581	2.21e-27	108
MsaG026842	AT4G14605.2	31.217	189	124	5	1	188	285	468	2.07e-21	91.7
MsaG026842	AT4G14605.1	31.217	189	124	5	1	188	285	468	2.07e-21	91.7
MsaG026842	AT5G55580.2	30.857	175	114	3	1	170	166	338	7.68e-20	86.7
MsaG026842	AT5G55580.1	30.857	175	114	3	1	170	272	444	2.57e-19	85.5
MsaG026842	AT2G21710.1	30.102	196	132	3	1	193	405	598	1.84e-18	83.2
MsaG026842	AT4G38160.4	28.025	157	110	1	38	191	168	324	1.97e-14	70.9
MsaG026842	AT4G38160.1	28.025	157	110	1	38	191	168	324	1.97e-14	70.9
MsaG026842	AT4G38160.3	28.025	157	110	1	38	191	168	324	2.20e-14	70.9
MsaG026842	AT4G38160.2	28.025	157	110	1	38	191	168	324	2.43e-14	70.9
MsaG026842	AT2G44020.1	36.937	111	65	2	83	191	352	459	7.00e-14	69.7
MsaG026842	AT5G55580.3	29.114	158	100	5	24	172	223	377	5.72e-11	61.2

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTGCTTGATTTGCGGTTAA+AGG	0.233881	5:-30086004	MsaT026842.1:CDS
ACGTGTGGAGGTTTCGAATA+TGG	0.257392	5:-30086262	MsaT026842.1:CDS
AAGGAACTTGAGGGAATATA+AGG	0.334661	5:-30085985	None:intergenic
GTGCCAGACGACATTGCTTT+TGG	0.336067	5:-30086346	MsaT026842.1:CDS
TTGAGGGAATTAGGGTTTGT+TGG	0.348767	5:-30086384	MsaT026842.1:CDS
TGAGGGAATTAGGGTTTGTT+GGG	0.358434	5:-30086383	MsaT026842.1:CDS
GGTTCACACGTGAGAAGTTC+AGG	0.376179	5:+30086549	None:intergenic
AATATGGTTGTGAGGTCACC+TGG	0.384205	5:-30086246	MsaT026842.1:CDS
TCCTTTGCAAGAGATGTTGC+AGG	0.404002	5:-30086052	MsaT026842.1:CDS
AAAACTCAACTTTAGGCAAA+AGG	0.404268	5:+30086304	None:intergenic
CACGCGATGTTGGTTCGGCT+TGG	0.408581	5:-30086084	MsaT026842.1:CDS
CTTGCGGTGTCCTAGATTGT+TGG	0.417943	5:-30086448	MsaT026842.1:CDS
GGAGGCACGCGATGTTGGTT+CGG	0.447113	5:-30086089	MsaT026842.1:CDS
ATTCTAGGTTGCTTGATTTG+CGG	0.448500	5:-30086011	MsaT026842.1:CDS
ACACTACTAACCAACAATCT+AGG	0.454380	5:+30086438	None:intergenic
AAACCAAAAGCAATGTCGTC+TGG	0.503937	5:+30086343	None:intergenic
GGGTTTGGGGTTCACACGTG+TGG	0.504748	5:-30086277	MsaT026842.1:CDS
AAACTCAACTTTAGGCAAAA+GGG	0.506451	5:+30086305	None:intergenic
ATGTTGCAGGTTAGTGATGG+TGG	0.519665	5:-30086039	MsaT026842.1:CDS
TTGCGGTTAAAGGAACTTGA+GGG	0.543536	5:-30085994	MsaT026842.1:CDS
ATTGAGAAGAAAATCAAGAA+GGG	0.544003	5:+30086509	None:intergenic
CGTCTGGCACGTGAGAGAGT+GGG	0.547888	5:+30086359	None:intergenic
TAAGCGGAGGCACGCGATGT+TGG	0.548999	5:-30086094	MsaT026842.1:CDS
TTTGGGGTTCACACGTGTGG+AGG	0.549501	5:-30086274	MsaT026842.1:CDS
TCGTCTGGCACGTGAGAGAG+TGG	0.562386	5:+30086358	None:intergenic
CATTGAGAAGAAAATCAAGA+AGG	0.567057	5:+30086508	None:intergenic
GTCTGGCACGTGAGAGAGTG+GGG	0.572333	5:+30086360	None:intergenic
ACCTGCAACATCTCTTGCAA+AGG	0.590277	5:+30086051	None:intergenic
TTTGCGGTTAAAGGAACTTG+AGG	0.597296	5:-30085995	MsaT026842.1:CDS
GCTTGGAAGGGAGGATTAAG+CGG	0.607101	5:-30086110	MsaT026842.1:CDS
TTGAGAAGAAAATCAAGAAG+GGG	0.620983	5:+30086510	None:intergenic
GTGATGTTGCTGAGTTGAAG+AGG	0.653205	5:-30086155	MsaT026842.1:CDS
GAGATGTTGCAGGTTAGTGA+TGG	0.656683	5:-30086042	MsaT026842.1:CDS
AGGTTTCGAATATGGTTGTG+AGG	0.659704	5:-30086254	MsaT026842.1:CDS
AAGCTAAAAGAGAAATACTG+AGG	0.664066	5:+30086129	None:intergenic
TGAGAAGAAAATCAAGAAGG+GGG	0.672373	5:+30086511	None:intergenic
TGGAAGGGAGGATTAAGCGG+AGG	0.683228	5:-30086107	MsaT026842.1:CDS
ACACTAAAAGTCAATAACCC+AGG	0.692067	5:+30086228	None:intergenic
ATATGGTTGTGAGGTCACCT+GGG	0.703831	5:-30086245	MsaT026842.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	30085987	30086595	30085987	ID=MsaG026842
Chr5	mRNA	30085987	30086595	30085987	ID=MsaT026842.1;Parent=MsaG026842
Chr5	exon	30085987	30086595	30085987	ID=MsaT026842.1.exon1;Parent=MsaT026842.1
Chr5	CDS	30085987	30086595	30085987	ID=cds.MsaT026842.1;Parent=MsaT026842.1

Gene Sequence

>MsaT026842.1

ATGGGTCGAATTCTTGATATGCTTCCTGAACTTCTCACGTGTGAACCACACAGTGATATTTACCCCCTTCTTGATTTTCTTCTCAATGAGGTTGAAATTCCTTACCATGATGTTCAAAAATCAATCTTGCGGTGTCCTAGATTGTTGGTTAGTAGTGTAGAGAATCGATTGAGACCTGCTCTGTGTTTTTTGAGGGAATTAGGGTTTGTTGGGCCCCACTCTCTCACGTGCCAGACGACATTGCTTTTGGTTTCGAGTGTTGAGGATACCCTTTTGCCTAAAGTTGAGTTTTTGATGGGTTTGGGGTTCACACGTGTGGAGGTTTCGAATATGGTTGTGAGGTCACCTGGGTTATTGACTTTTAGTGTGGATAAGAATTTGGCTCCTAAATTTGAGTTTTTCGTGAAGGAGATGAATGGTGATGTTGCTGAGTTGAAGAGGTATCCTCAGTATTTCTCTTTTAGCTTGGAAGGGAGGATTAAGCGGAGGCACGCGATGTTGGTTCGGCTTGGATTGTCGCTTCCTTTGCAAGAGATGTTGCAGGTTAGTGATGGTGGTTTTGATTCTAGGTTGCTTGATTTGCGGTTAAAGGAACTTGAGGGAATATAA

Protein sequence

>MsaT026842.1

MGRILDMLPELLTCEPHSDIYPLLDFLLNEVEIPYHDVQKSILRCPRLLVSSVENRLRPALCFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLMGLGFTRVEVSNMVVRSPGLLTFSVDKNLAPKFEFFVKEMNGDVAELKRYPQYFSFSLEGRIKRRHAMLVRLGLSLPLQEMLQVSDGGFDSRLLDLRLKELEGI*