AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG026850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026850 MtrunA17_Chr5g0417551 85.901 383 38 2 1 379 1 371 0.0 637
MsaG026850 MtrunA17_Chr5g0417561 84.697 379 42 2 1 379 1 363 0.0 627
MsaG026850 MtrunA17_Chr5g0417601 65.239 397 104 11 1 379 1 381 1.54e-149 427
MsaG026850 MtrunA17_Chr5g0417571 61.183 389 74 9 1 379 1 322 1.86e-128 372
MsaG026850 MtrunA17_Chr4g0042481 39.220 436 148 15 52 378 37 464 1.74e-73 236
MsaG026850 MtrunA17_Chr7g0217581 33.068 502 189 16 2 377 101 581 4.33e-62 209
MsaG026850 MtrunA17_Chr6g0453321 33.797 503 189 18 4 377 6 493 2.01e-54 187
MsaG026850 MtrunA17_Chr3g0092111 36.508 378 128 14 101 377 97 463 5.26e-53 182
MsaG026850 MtrunA17_Chr8g0355261 29.437 462 206 19 4 379 12 439 1.81e-36 137
MsaG026850 MtrunA17_Chr6g0460731 58.586 99 35 2 96 188 51 149 2.30e-32 125
MsaG026850 MtrunA17_Chr7g0254161 31.672 341 132 12 129 379 95 424 1.14e-31 124
MsaG026850 MtrunA17_Chr2g0283811 70.769 65 19 0 124 188 36 100 2.56e-29 111
MsaG026850 MtrunA17_Chr6g0460721 54.167 96 38 2 99 188 47 142 4.82e-28 112
MsaG026850 MtrunA17_Chr8g0374111 71.698 53 15 0 135 187 29 81 8.70e-23 95.5
MsaG026850 MtrunA17_Chr4g0010151 47.436 78 41 0 111 188 58 135 1.87e-21 94.7
MsaG026850 MtrunA17_Chr8g0374251 62.295 61 23 0 137 197 70 130 2.87e-21 93.6
MsaG026850 MtrunA17_Chr8g0346551 62.069 58 22 0 131 188 20 77 3.68e-21 92.0
MsaG026850 MtrunA17_Chr2g0326001 65.517 58 20 0 131 188 36 93 5.97e-21 92.0
MsaG026850 MtrunA17_Chr3g0127201 60.000 60 24 0 132 191 24 83 7.21e-21 91.7
MsaG026850 MtrunA17_Chr2g0328021 67.308 52 17 0 137 188 64 115 7.41e-21 91.7
MsaG026850 MtrunA17_Chr4g0047001 71.154 52 15 0 137 188 57 108 1.33e-20 92.4
MsaG026850 MtrunA17_Chr8g0341671 67.308 52 17 0 135 186 20 71 1.77e-20 89.0
MsaG026850 MtrunA17_Chr4g0061761 64.151 53 19 0 133 185 38 90 1.80e-20 91.3
MsaG026850 MtrunA17_Chr1g0188851 64.151 53 19 0 135 187 43 95 1.95e-20 90.5
MsaG026850 MtrunA17_Chr7g0223311 68.627 51 16 0 137 187 79 129 2.23e-20 91.7
MsaG026850 MtrunA17_Chr4g0047761 64.151 53 19 0 137 189 74 126 2.48e-20 90.5
MsaG026850 MtrunA17_Chr4g0030051 61.538 65 21 1 127 187 29 93 2.94e-20 90.1
MsaG026850 MtrunA17_Chr7g0237921 67.308 52 17 0 137 188 78 129 3.83e-20 90.5
MsaG026850 MtrunA17_Chr2g0282051 68.519 54 16 1 135 188 46 98 4.52e-20 89.0
MsaG026850 MtrunA17_Chr8g0367161 51.389 72 27 1 117 188 22 85 6.71e-20 89.7
MsaG026850 MtrunA17_Chr3g0126201 63.158 57 20 1 133 188 48 104 1.13e-19 89.0
MsaG026850 MtrunA17_Chr2g0308011 67.347 49 16 0 135 183 37 85 1.21e-19 86.7
MsaG026850 MtrunA17_Chr1g0177251 63.793 58 20 1 132 188 8 65 1.34e-19 88.2
MsaG026850 MtrunA17_Chr4g0031411 49.275 69 35 0 119 187 59 127 1.86e-19 88.6
MsaG026850 MtrunA17_Chr2g0282511 67.347 49 16 0 135 183 45 93 1.07e-18 85.9
MsaG026850 MtrunA17_Chr5g0411951 60.000 55 22 0 131 185 39 93 1.07e-18 86.3
MsaG026850 MtrunA17_Chr2g0282441 66.000 50 17 0 137 186 27 76 1.68e-18 85.5
MsaG026850 MtrunA17_Chr3g0117601 64.706 51 18 0 135 185 61 111 4.58e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026850 AT5G62430.1 44.983 289 129 8 106 379 25 298 9.75e-62 201
MsaG026850 AT5G39660.3 35.616 365 147 14 93 377 99 455 4.14e-47 167
MsaG026850 AT5G39660.1 35.616 365 147 14 93 377 99 455 4.14e-47 167
MsaG026850 AT5G39660.2 35.616 365 147 14 93 377 99 455 4.14e-47 167
MsaG026850 AT1G69570.1 37.160 331 155 15 88 379 81 397 6.07e-45 159
MsaG026850 AT1G26790.1 34.247 292 153 10 116 379 92 372 8.19e-40 145
MsaG026850 AT1G29160.1 71.212 66 19 0 123 188 50 115 1.99e-31 117
MsaG026850 AT3G47500.1 40.670 209 77 7 2 203 5 173 4.90e-31 123
MsaG026850 AT3G47500.1 41.667 156 74 5 241 379 293 448 1.05e-19 90.9
MsaG026850 AT2G34140.1 54.545 88 35 1 123 205 46 133 4.51e-30 114
MsaG026850 AT3G55370.1 36.567 134 74 1 57 190 9 131 1.84e-23 100
MsaG026850 AT3G55370.2 36.567 134 74 1 57 190 9 131 3.02e-23 99.8
MsaG026850 AT5G60200.1 61.194 67 26 0 131 197 51 117 9.90e-22 94.0
MsaG026850 AT3G50410.1 71.154 52 15 0 135 186 30 81 1.47e-21 93.2
MsaG026850 AT1G51700.1 54.795 73 33 0 135 207 33 105 2.11e-21 91.3
MsaG026850 AT3G55370.3 47.126 87 45 1 105 190 90 176 3.28e-21 94.4
MsaG026850 AT3G21270.1 72.549 51 14 0 137 187 31 81 3.87e-21 90.9
MsaG026850 AT2G28510.1 67.241 58 19 0 137 194 50 107 9.00e-21 91.7
MsaG026850 AT3G61850.2 62.295 61 23 0 131 191 58 118 1.23e-20 91.3
MsaG026850 AT3G61850.3 62.295 61 23 0 131 191 58 118 1.23e-20 91.3
MsaG026850 AT3G61850.1 62.295 61 23 0 131 191 70 130 1.29e-20 91.7
MsaG026850 AT2G28810.2 45.679 81 44 0 106 186 48 128 1.29e-20 92.0
MsaG026850 AT5G60850.1 66.071 56 19 0 135 190 51 106 1.56e-20 91.3
MsaG026850 AT2G28810.1 45.679 81 44 0 106 186 65 145 1.59e-20 92.0
MsaG026850 AT3G61850.5 42.157 102 59 0 90 191 17 118 1.69e-20 91.3
MsaG026850 AT3G61850.4 62.295 61 23 0 131 191 70 130 1.70e-20 91.7
MsaG026850 AT1G47655.1 50.667 75 37 0 109 183 3 77 1.79e-20 89.0
MsaG026850 AT5G66940.1 70.588 51 15 0 137 187 34 84 2.15e-20 89.4
MsaG026850 AT5G02460.1 52.857 70 33 0 119 188 79 148 3.03e-20 92.0
MsaG026850 AT5G65590.1 49.425 87 41 1 104 190 13 96 3.40e-20 90.5
MsaG026850 AT1G28310.1 66.667 54 18 0 135 188 27 80 3.79e-20 90.5
MsaG026850 AT4G24060.1 63.158 57 21 0 132 188 50 106 4.27e-20 90.9
MsaG026850 AT1G07640.1 68.627 51 16 0 137 187 23 73 4.37e-20 89.7
MsaG026850 AT3G45610.1 59.016 61 25 0 131 191 36 96 4.41e-20 89.0
MsaG026850 AT1G07640.2 68.627 51 16 0 137 187 79 129 5.31e-20 90.5
MsaG026850 AT1G28310.2 66.667 54 18 0 135 188 51 104 5.46e-20 90.5
MsaG026850 AT2G37590.1 58.621 58 24 0 131 188 85 142 5.50e-20 90.1
MsaG026850 AT1G07640.3 68.627 51 16 0 137 187 87 137 6.01e-20 90.1
MsaG026850 AT4G00940.1 64.286 56 20 0 137 192 70 125 4.50e-19 87.0
MsaG026850 AT4G00940.3 64.286 56 20 0 137 192 70 125 4.50e-19 87.0
MsaG026850 AT4G00940.2 64.286 56 20 0 137 192 70 125 4.50e-19 87.0
MsaG026850 AT4G38000.1 56.250 64 27 1 130 192 36 99 5.39e-19 85.9
MsaG026850 AT3G52440.1 61.404 57 21 1 133 188 22 78 8.62e-19 85.5
MsaG026850 AT1G21340.1 59.375 64 23 1 137 200 40 100 1.03e-18 85.5
MsaG026850 AT1G64620.1 51.471 68 29 1 116 183 34 97 1.18e-18 86.7
MsaG026850 AT3G52440.2 61.404 57 21 1 133 188 41 97 1.23e-18 85.1
MsaG026850 AT5G62940.1 67.347 49 16 0 137 185 75 123 6.44e-18 84.7
MsaG026850 AT4G21050.1 50.725 69 32 1 120 188 11 77 2.76e-17 80.1
MsaG026850 AT2G46590.1 59.615 52 21 0 131 182 64 115 2.80e-17 82.8
MsaG026850 AT2G46590.2 59.615 52 21 0 131 182 76 127 3.03e-17 82.8
MsaG026850 AT4G21040.1 55.769 52 23 0 137 188 27 78 4.82e-15 74.3
MsaG026850 AT4G21080.1 55.769 52 23 0 137 188 27 78 1.83e-14 73.2

Find 69 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGTACTGTCTTGAAATT+TGG 0.139556 5:-30244196 MsaT026850.1:CDS
TTTCAATGGATTTGCATCTA+TGG 0.224783 5:-30243780 MsaT026850.1:CDS
GTTCCAAGTAAACCTACTTT+AGG 0.234419 5:-30243953 MsaT026850.1:CDS
AAACCCTTTGCATCTTCATT+AGG 0.263138 5:+30243842 None:intergenic
TCTTCAATTCTCAATTTCTT+AGG 0.264262 5:+30243866 None:intergenic
GCAAAAGCTGCCAGAGATAC+TGG 0.309128 5:-30244315 MsaT026850.1:CDS
ACCACCATAGTATGCTATAT+TGG 0.313954 5:+30244024 None:intergenic
GGGAGTGTTTAAATCCTCTT+TGG 0.317886 5:+30244546 None:intergenic
AACCCTTTGCATCTTCATTA+GGG 0.318049 5:+30243843 None:intergenic
AATGAAGTTGAAGACATAAT+AGG 0.357903 5:+30244163 None:intergenic
TTCCAAGTAAACCTACTTTA+GGG 0.369270 5:-30243952 MsaT026850.1:CDS
TGCCAGAGATACTGGACTTC+CGG 0.375392 5:-30244307 MsaT026850.1:CDS
TTCCCTAAAGTAGGTTTACT+TGG 0.378626 5:+30243950 None:intergenic
ACATGATTCAAAGAGATATA+AGG 0.401349 5:-30245030 MsaT026850.1:intron
CAACCCAATATAGCATACTA+TGG 0.408858 5:-30244028 MsaT026850.1:CDS
CCACCATAGTATGCTATATT+GGG 0.415830 5:+30244025 None:intergenic
ATCAATTTCAGGAACAATCA+AGG 0.419402 5:-30244615 MsaT026850.1:intron
CCTTGATAAAGCTGCAGGAT+TGG 0.440224 5:+30243709 None:intergenic
GACACAGGATAACACATTGC+TGG 0.441391 5:+30244055 None:intergenic
TTCAATGGATTTGCATCTAT+GGG 0.443267 5:-30243779 MsaT026850.1:CDS
TTGCATCTATGGGTGGTGAT+AGG 0.444216 5:-30243769 MsaT026850.1:CDS
CTCCGGAAGTCCAGTATCTC+TGG 0.452743 5:+30244305 None:intergenic
CTTGAATGTTTCCCTAAAGT+AGG 0.465584 5:+30243941 None:intergenic
CTCAATAAGGCTTGAAGATG+TGG 0.477034 5:+30244522 None:intergenic
CATACTTCTCGTGGTTCCTC+CGG 0.479008 5:+30244288 None:intergenic
GAAGTTTCTGTTTCTGATGA+GGG 0.482071 5:+30244487 None:intergenic
TTTGCCAAGAAAATGAATGT+TGG 0.488827 5:-30244142 MsaT026850.1:CDS
TAACACATTGCTGGGTTCCA+TGG 0.491823 5:+30244064 None:intergenic
TTTGAAGAATTCACTTCAAG+TGG 0.499476 5:+30245056 None:intergenic
GTGGTTGTTTAGTCCCATCA+TGG 0.499829 5:-30244006 MsaT026850.1:CDS
GCAGAAATGACGGGGCTGGT+TGG 0.501715 5:+30244336 None:intergenic
TATATCTCTTTGAATCATGT+TGG 0.511854 5:+30245033 None:intergenic
TTCCCAATCAAATCCTCTCA+TGG 0.512251 5:+30243675 None:intergenic
CCAATCCTGCAGCTTTATCA+AGG 0.521791 5:-30243709 MsaT026850.1:CDS
AGAAGTATGCTTGTAGGTGC+AGG 0.528984 5:-30244274 MsaT026850.1:CDS
AGAAGTTTCTGTTTCTGATG+AGG 0.529077 5:+30244486 None:intergenic
TTAGGGAAACATTCAAGAGA+TGG 0.534355 5:-30243935 MsaT026850.1:CDS
TTGACGATTATGTGAGGCAT+CGG 0.539506 5:+30244219 None:intergenic
TAGGTTGTACGCTCCATGAT+GGG 0.544678 5:+30243993 None:intergenic
TGAGACCTTGATAAAGCTGC+AGG 0.554542 5:+30243704 None:intergenic
ATCGTAATCAAGTACTGAGG+TGG 0.554962 5:+30244585 None:intergenic
CATAGTATGCTATATTGGGT+TGG 0.557895 5:+30244029 None:intergenic
ACACAGGATAACACATTGCT+GGG 0.569497 5:+30244056 None:intergenic
GAGAAATCTTGATGAGCAAG+AGG 0.571155 5:+30245116 None:intergenic
GACCCTAATGAAGATGCAAA+GGG 0.573223 5:-30243845 MsaT026850.1:CDS
CTAGGAAACAAGAGTGGTGG+AGG 0.573390 5:-30243806 MsaT026850.1:CDS
ACCACGAGAAGTATGCTTGT+AGG 0.578460 5:-30244280 MsaT026850.1:CDS
ATAGGTTGTACGCTCCATGA+TGG 0.581466 5:+30243992 None:intergenic
AATAAGGCTTGAAGATGTGG+TGG 0.584261 5:+30244525 None:intergenic
GGGTTCCATGGAAACTGTTG+TGG 0.589831 5:+30244076 None:intergenic
AGACCCTAATGAAGATGCAA+AGG 0.590368 5:-30243846 MsaT026850.1:CDS
GGTCTCATGTGTTCCATGAG+AGG 0.592053 5:-30243688 MsaT026850.1:CDS
ACACAAGATTGAGTTGCGAT+AGG 0.596525 5:+30243974 None:intergenic
ATTGGCTTTCAATACTGATG+AGG 0.608635 5:+30243727 None:intergenic
TCGTAATCAAGTACTGAGGT+GGG 0.612458 5:+30244586 None:intergenic
ATAAGGCTTGAAGATGTGGT+GGG 0.622284 5:+30244526 None:intergenic
AGCCTCAAAACAAACCAAAG+AGG 0.625789 5:-30244560 MsaT026850.1:CDS
AATGGATTTGCATCTATGGG+TGG 0.631829 5:-30243776 MsaT026850.1:CDS
ACCTACAAGCATACTTCTCG+TGG 0.650658 5:+30244279 None:intergenic
CCCAATATAGCATACTATGG+TGG 0.653975 5:-30244025 MsaT026850.1:CDS
ACACTAGGAAACAAGAGTGG+TGG 0.656394 5:-30243809 MsaT026850.1:CDS
AAATCTTGATGAGCAAGAGG+AGG 0.659290 5:+30245119 None:intergenic
ATATTGGGTTGGAATGACAC+AGG 0.664359 5:+30244040 None:intergenic
ACTCATTTGACGATTATGTG+AGG 0.678683 5:+30244213 None:intergenic
CAGAGATACTGGACTTCCGG+AGG 0.703877 5:-30244304 MsaT026850.1:CDS
GGGTGGTGATAGGAATCATG+TGG 0.704890 5:-30243759 MsaT026850.1:CDS
AAGAGGAGGAGAAAACTCAG+AGG 0.721417 5:+30245133 None:intergenic
TTCATCGTAATCAAGTACTG+AGG 0.724323 5:+30244582 None:intergenic
TTAACACTAGGAAACAAGAG+TGG 0.767808 5:-30243812 MsaT026850.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 30243682 30245225 30243682 ID=MsaG026850
Chr5 mRNA 30243682 30245225 30243682 ID=MsaT026850.1;Parent=MsaG026850
Chr5 exon 30243682 30244626 30243682 ID=MsaT026850.1.exon2;Parent=MsaT026850.1
Chr5 CDS 30243682 30244626 30243682 ID=cds.MsaT026850.1;Parent=MsaT026850.1
Chr5 exon 30245031 30245225 30245031 ID=MsaT026850.1.exon1;Parent=MsaT026850.1
Chr5 CDS 30245031 30245225 30245031 ID=cds.MsaT026850.1;Parent=MsaT026850.1
Gene Sequence

>MsaT026850.1

ATGACTAATGATTCAACCATTAAGCTTTTTGGGACAACAATTTTTCAAACACACAACACTGATGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATCAAGATTTCTCTGATCATAGTATTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTTCAAACCAACATGATTCAAAGAGATATAAGGAACAATCAAGGAAAGAACCCACCTCAGTACTTGATTACGATGAAGCCTCAAAACAAACCAAAGAGGATTTAAACACTCCCACCACATCTTCAAGCCTTATTGAGAACCCGAAAACTCCCTCATCAGAAACAGAAACTTCTCAACTGAATTCCACTAAAATTGATGAACAAAGTGATATGTATCAAGACAAAGCTCCTAACAAAATTGTTCCATGTCCAAGATGCAAAAGCGTAGACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGTCATTTCTGCAAAAGCTGCCAGAGATACTGGACTTCCGGAGGAACCACGAGAAGTATGCTTGTAGGTGCAGGTCGCCGTAAGAACAAAATCTCTTCTTTTTCTTCCGATGCCTCACATAATCGTCAAATGAGTACTGTCTTGAAATTTGGATCAGATTCTCCTATTATGTCTTCAACTTCATTTGCCAAGAAAATGAATGTTGGATCAGATGATGAAACATCTGATAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAGCAATGTGTTATCCTGTGTCATTCCAACCCAATATAGCATACTATGGTGGTTGTTTAGTCCCATCATGGAGCGTACAACCTATCGCAACTCAATCTTGTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGCTTAGAAAATAACAACAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGAAATTGAGAATTGAAGACCCTAATGAAGATGCAAAGGGTTTTAATTGGTTAACACTAGGAAACAAGAGTGGTGGAGGACTTTTCAATGGATTTGCATCTATGGGTGGTGATAGGAATCATGTGGTTGAAGCAGCCTCATCAGTATTGAAAGCCAATCCTGCAGCTTTATCAAGGTCTCATGTGTTCCATGAGAGGATTTGA

Protein sequence

>MsaT026850.1

MTNDSTIKLFGTTIFQTHNTDDCSSEFSPPLAHQDFSDHSIHSSLSSSSPLEVNSSNQHDSKRYKEQSRKEPTSVLDYDEASKQTKEDLNTPTTSSSLIENPKTPSSETETSQLNSTKIDEQSDMYQDKAPNKIVPCPRCKSVDTKFCYYNNYNANQPRHFCKSCQRYWTSGGTTRSMLVGAGRRKNKISSFSSDASHNRQMSTVLKFGSDSPIMSSTSFAKKMNVGSDDETSDKSNQCFFPQQFPWNPAMCYPVSFQPNIAYYGGCLVPSWSVQPIATQSCVPSKPTLGKHSRDGLENNNKESDNNSVLIPKKLRIEDPNEDAKGFNWLTLGNKSGGGLFNGFASMGGDRNHVVEAASSVLKANPAALSRSHVFHERI*