Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026850 | XP_003613823.1 | 85.901 | 383 | 38 | 2 | 1 | 379 | 1 | 371 | 0.0 | 637 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026850 | sp|Q8W1E3|CDF1_ARATH | 44.983 | 289 | 129 | 8 | 106 | 379 | 25 | 298 | 9.59e-61 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026850 | tr|G7KGL5|G7KGL5_MEDTR | 85.901 | 383 | 38 | 2 | 1 | 379 | 1 | 371 | 0.0 | 637 |
Gene ID | Type | Classification |
---|---|---|
MsaG026850 | TF | C2C2-Dof |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001381 | MsaG026850 | 0.815038 | 1.962133e-51 | 3.796613e-49 |
MsaG006332 | MsaG026850 | 0.822411 | 4.235178e-53 | 9.930647e-51 |
MsaG018146 | MsaG026850 | 0.814219 | 2.973710e-51 | 5.636656e-49 |
MsaG025737 | MsaG026850 | 0.813758 | 3.753497e-51 | 7.032936e-49 |
MsaG026850 | MsaG027246 | 0.832501 | 1.650087e-55 | 5.133569e-53 |
MsaG026850 | MsaG031344 | 0.839626 | 2.613207e-57 | 1.008195e-54 |
MsaG026850 | MsaG033784 | 0.809899 | 2.573402e-50 | 4.384010e-48 |
MsaG026850 | MsaG036238 | 0.800424 | 2.425462e-48 | 3.311017e-46 |
MsaG026850 | MsaG036239 | 0.800050 | 2.887876e-48 | 3.909051e-46 |
MsaG026850 | MsaG044873 | 0.815438 | 1.600659e-51 | 3.128755e-49 |
MsaG026850 | MsaG031556 | 0.855785 | 9.684382e-62 | 6.436121e-59 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026850 | MtrunA17_Chr5g0417551 | 85.901 | 383 | 38 | 2 | 1 | 379 | 1 | 371 | 0.0 | 637 |
MsaG026850 | MtrunA17_Chr5g0417561 | 84.697 | 379 | 42 | 2 | 1 | 379 | 1 | 363 | 0.0 | 627 |
MsaG026850 | MtrunA17_Chr5g0417601 | 65.239 | 397 | 104 | 11 | 1 | 379 | 1 | 381 | 1.54e-149 | 427 |
MsaG026850 | MtrunA17_Chr5g0417571 | 61.183 | 389 | 74 | 9 | 1 | 379 | 1 | 322 | 1.86e-128 | 372 |
MsaG026850 | MtrunA17_Chr4g0042481 | 39.220 | 436 | 148 | 15 | 52 | 378 | 37 | 464 | 1.74e-73 | 236 |
MsaG026850 | MtrunA17_Chr7g0217581 | 33.068 | 502 | 189 | 16 | 2 | 377 | 101 | 581 | 4.33e-62 | 209 |
MsaG026850 | MtrunA17_Chr6g0453321 | 33.797 | 503 | 189 | 18 | 4 | 377 | 6 | 493 | 2.01e-54 | 187 |
MsaG026850 | MtrunA17_Chr3g0092111 | 36.508 | 378 | 128 | 14 | 101 | 377 | 97 | 463 | 5.26e-53 | 182 |
MsaG026850 | MtrunA17_Chr8g0355261 | 29.437 | 462 | 206 | 19 | 4 | 379 | 12 | 439 | 1.81e-36 | 137 |
MsaG026850 | MtrunA17_Chr6g0460731 | 58.586 | 99 | 35 | 2 | 96 | 188 | 51 | 149 | 2.30e-32 | 125 |
MsaG026850 | MtrunA17_Chr7g0254161 | 31.672 | 341 | 132 | 12 | 129 | 379 | 95 | 424 | 1.14e-31 | 124 |
MsaG026850 | MtrunA17_Chr2g0283811 | 70.769 | 65 | 19 | 0 | 124 | 188 | 36 | 100 | 2.56e-29 | 111 |
MsaG026850 | MtrunA17_Chr6g0460721 | 54.167 | 96 | 38 | 2 | 99 | 188 | 47 | 142 | 4.82e-28 | 112 |
MsaG026850 | MtrunA17_Chr8g0374111 | 71.698 | 53 | 15 | 0 | 135 | 187 | 29 | 81 | 8.70e-23 | 95.5 |
MsaG026850 | MtrunA17_Chr4g0010151 | 47.436 | 78 | 41 | 0 | 111 | 188 | 58 | 135 | 1.87e-21 | 94.7 |
MsaG026850 | MtrunA17_Chr8g0374251 | 62.295 | 61 | 23 | 0 | 137 | 197 | 70 | 130 | 2.87e-21 | 93.6 |
MsaG026850 | MtrunA17_Chr8g0346551 | 62.069 | 58 | 22 | 0 | 131 | 188 | 20 | 77 | 3.68e-21 | 92.0 |
MsaG026850 | MtrunA17_Chr2g0326001 | 65.517 | 58 | 20 | 0 | 131 | 188 | 36 | 93 | 5.97e-21 | 92.0 |
MsaG026850 | MtrunA17_Chr3g0127201 | 60.000 | 60 | 24 | 0 | 132 | 191 | 24 | 83 | 7.21e-21 | 91.7 |
MsaG026850 | MtrunA17_Chr2g0328021 | 67.308 | 52 | 17 | 0 | 137 | 188 | 64 | 115 | 7.41e-21 | 91.7 |
MsaG026850 | MtrunA17_Chr4g0047001 | 71.154 | 52 | 15 | 0 | 137 | 188 | 57 | 108 | 1.33e-20 | 92.4 |
MsaG026850 | MtrunA17_Chr8g0341671 | 67.308 | 52 | 17 | 0 | 135 | 186 | 20 | 71 | 1.77e-20 | 89.0 |
MsaG026850 | MtrunA17_Chr4g0061761 | 64.151 | 53 | 19 | 0 | 133 | 185 | 38 | 90 | 1.80e-20 | 91.3 |
MsaG026850 | MtrunA17_Chr1g0188851 | 64.151 | 53 | 19 | 0 | 135 | 187 | 43 | 95 | 1.95e-20 | 90.5 |
MsaG026850 | MtrunA17_Chr7g0223311 | 68.627 | 51 | 16 | 0 | 137 | 187 | 79 | 129 | 2.23e-20 | 91.7 |
MsaG026850 | MtrunA17_Chr4g0047761 | 64.151 | 53 | 19 | 0 | 137 | 189 | 74 | 126 | 2.48e-20 | 90.5 |
MsaG026850 | MtrunA17_Chr4g0030051 | 61.538 | 65 | 21 | 1 | 127 | 187 | 29 | 93 | 2.94e-20 | 90.1 |
MsaG026850 | MtrunA17_Chr7g0237921 | 67.308 | 52 | 17 | 0 | 137 | 188 | 78 | 129 | 3.83e-20 | 90.5 |
MsaG026850 | MtrunA17_Chr2g0282051 | 68.519 | 54 | 16 | 1 | 135 | 188 | 46 | 98 | 4.52e-20 | 89.0 |
MsaG026850 | MtrunA17_Chr8g0367161 | 51.389 | 72 | 27 | 1 | 117 | 188 | 22 | 85 | 6.71e-20 | 89.7 |
MsaG026850 | MtrunA17_Chr3g0126201 | 63.158 | 57 | 20 | 1 | 133 | 188 | 48 | 104 | 1.13e-19 | 89.0 |
MsaG026850 | MtrunA17_Chr2g0308011 | 67.347 | 49 | 16 | 0 | 135 | 183 | 37 | 85 | 1.21e-19 | 86.7 |
MsaG026850 | MtrunA17_Chr1g0177251 | 63.793 | 58 | 20 | 1 | 132 | 188 | 8 | 65 | 1.34e-19 | 88.2 |
MsaG026850 | MtrunA17_Chr4g0031411 | 49.275 | 69 | 35 | 0 | 119 | 187 | 59 | 127 | 1.86e-19 | 88.6 |
MsaG026850 | MtrunA17_Chr2g0282511 | 67.347 | 49 | 16 | 0 | 135 | 183 | 45 | 93 | 1.07e-18 | 85.9 |
MsaG026850 | MtrunA17_Chr5g0411951 | 60.000 | 55 | 22 | 0 | 131 | 185 | 39 | 93 | 1.07e-18 | 86.3 |
MsaG026850 | MtrunA17_Chr2g0282441 | 66.000 | 50 | 17 | 0 | 137 | 186 | 27 | 76 | 1.68e-18 | 85.5 |
MsaG026850 | MtrunA17_Chr3g0117601 | 64.706 | 51 | 18 | 0 | 135 | 185 | 61 | 111 | 4.58e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026850 | AT5G62430.1 | 44.983 | 289 | 129 | 8 | 106 | 379 | 25 | 298 | 9.75e-62 | 201 |
MsaG026850 | AT5G39660.3 | 35.616 | 365 | 147 | 14 | 93 | 377 | 99 | 455 | 4.14e-47 | 167 |
MsaG026850 | AT5G39660.1 | 35.616 | 365 | 147 | 14 | 93 | 377 | 99 | 455 | 4.14e-47 | 167 |
MsaG026850 | AT5G39660.2 | 35.616 | 365 | 147 | 14 | 93 | 377 | 99 | 455 | 4.14e-47 | 167 |
MsaG026850 | AT1G69570.1 | 37.160 | 331 | 155 | 15 | 88 | 379 | 81 | 397 | 6.07e-45 | 159 |
MsaG026850 | AT1G26790.1 | 34.247 | 292 | 153 | 10 | 116 | 379 | 92 | 372 | 8.19e-40 | 145 |
MsaG026850 | AT1G29160.1 | 71.212 | 66 | 19 | 0 | 123 | 188 | 50 | 115 | 1.99e-31 | 117 |
MsaG026850 | AT3G47500.1 | 40.670 | 209 | 77 | 7 | 2 | 203 | 5 | 173 | 4.90e-31 | 123 |
MsaG026850 | AT3G47500.1 | 41.667 | 156 | 74 | 5 | 241 | 379 | 293 | 448 | 1.05e-19 | 90.9 |
MsaG026850 | AT2G34140.1 | 54.545 | 88 | 35 | 1 | 123 | 205 | 46 | 133 | 4.51e-30 | 114 |
MsaG026850 | AT3G55370.1 | 36.567 | 134 | 74 | 1 | 57 | 190 | 9 | 131 | 1.84e-23 | 100 |
MsaG026850 | AT3G55370.2 | 36.567 | 134 | 74 | 1 | 57 | 190 | 9 | 131 | 3.02e-23 | 99.8 |
MsaG026850 | AT5G60200.1 | 61.194 | 67 | 26 | 0 | 131 | 197 | 51 | 117 | 9.90e-22 | 94.0 |
MsaG026850 | AT3G50410.1 | 71.154 | 52 | 15 | 0 | 135 | 186 | 30 | 81 | 1.47e-21 | 93.2 |
MsaG026850 | AT1G51700.1 | 54.795 | 73 | 33 | 0 | 135 | 207 | 33 | 105 | 2.11e-21 | 91.3 |
MsaG026850 | AT3G55370.3 | 47.126 | 87 | 45 | 1 | 105 | 190 | 90 | 176 | 3.28e-21 | 94.4 |
MsaG026850 | AT3G21270.1 | 72.549 | 51 | 14 | 0 | 137 | 187 | 31 | 81 | 3.87e-21 | 90.9 |
MsaG026850 | AT2G28510.1 | 67.241 | 58 | 19 | 0 | 137 | 194 | 50 | 107 | 9.00e-21 | 91.7 |
MsaG026850 | AT3G61850.2 | 62.295 | 61 | 23 | 0 | 131 | 191 | 58 | 118 | 1.23e-20 | 91.3 |
MsaG026850 | AT3G61850.3 | 62.295 | 61 | 23 | 0 | 131 | 191 | 58 | 118 | 1.23e-20 | 91.3 |
MsaG026850 | AT3G61850.1 | 62.295 | 61 | 23 | 0 | 131 | 191 | 70 | 130 | 1.29e-20 | 91.7 |
MsaG026850 | AT2G28810.2 | 45.679 | 81 | 44 | 0 | 106 | 186 | 48 | 128 | 1.29e-20 | 92.0 |
MsaG026850 | AT5G60850.1 | 66.071 | 56 | 19 | 0 | 135 | 190 | 51 | 106 | 1.56e-20 | 91.3 |
MsaG026850 | AT2G28810.1 | 45.679 | 81 | 44 | 0 | 106 | 186 | 65 | 145 | 1.59e-20 | 92.0 |
MsaG026850 | AT3G61850.5 | 42.157 | 102 | 59 | 0 | 90 | 191 | 17 | 118 | 1.69e-20 | 91.3 |
MsaG026850 | AT3G61850.4 | 62.295 | 61 | 23 | 0 | 131 | 191 | 70 | 130 | 1.70e-20 | 91.7 |
MsaG026850 | AT1G47655.1 | 50.667 | 75 | 37 | 0 | 109 | 183 | 3 | 77 | 1.79e-20 | 89.0 |
MsaG026850 | AT5G66940.1 | 70.588 | 51 | 15 | 0 | 137 | 187 | 34 | 84 | 2.15e-20 | 89.4 |
MsaG026850 | AT5G02460.1 | 52.857 | 70 | 33 | 0 | 119 | 188 | 79 | 148 | 3.03e-20 | 92.0 |
MsaG026850 | AT5G65590.1 | 49.425 | 87 | 41 | 1 | 104 | 190 | 13 | 96 | 3.40e-20 | 90.5 |
MsaG026850 | AT1G28310.1 | 66.667 | 54 | 18 | 0 | 135 | 188 | 27 | 80 | 3.79e-20 | 90.5 |
MsaG026850 | AT4G24060.1 | 63.158 | 57 | 21 | 0 | 132 | 188 | 50 | 106 | 4.27e-20 | 90.9 |
MsaG026850 | AT1G07640.1 | 68.627 | 51 | 16 | 0 | 137 | 187 | 23 | 73 | 4.37e-20 | 89.7 |
MsaG026850 | AT3G45610.1 | 59.016 | 61 | 25 | 0 | 131 | 191 | 36 | 96 | 4.41e-20 | 89.0 |
MsaG026850 | AT1G07640.2 | 68.627 | 51 | 16 | 0 | 137 | 187 | 79 | 129 | 5.31e-20 | 90.5 |
MsaG026850 | AT1G28310.2 | 66.667 | 54 | 18 | 0 | 135 | 188 | 51 | 104 | 5.46e-20 | 90.5 |
MsaG026850 | AT2G37590.1 | 58.621 | 58 | 24 | 0 | 131 | 188 | 85 | 142 | 5.50e-20 | 90.1 |
MsaG026850 | AT1G07640.3 | 68.627 | 51 | 16 | 0 | 137 | 187 | 87 | 137 | 6.01e-20 | 90.1 |
MsaG026850 | AT4G00940.1 | 64.286 | 56 | 20 | 0 | 137 | 192 | 70 | 125 | 4.50e-19 | 87.0 |
MsaG026850 | AT4G00940.3 | 64.286 | 56 | 20 | 0 | 137 | 192 | 70 | 125 | 4.50e-19 | 87.0 |
MsaG026850 | AT4G00940.2 | 64.286 | 56 | 20 | 0 | 137 | 192 | 70 | 125 | 4.50e-19 | 87.0 |
MsaG026850 | AT4G38000.1 | 56.250 | 64 | 27 | 1 | 130 | 192 | 36 | 99 | 5.39e-19 | 85.9 |
MsaG026850 | AT3G52440.1 | 61.404 | 57 | 21 | 1 | 133 | 188 | 22 | 78 | 8.62e-19 | 85.5 |
MsaG026850 | AT1G21340.1 | 59.375 | 64 | 23 | 1 | 137 | 200 | 40 | 100 | 1.03e-18 | 85.5 |
MsaG026850 | AT1G64620.1 | 51.471 | 68 | 29 | 1 | 116 | 183 | 34 | 97 | 1.18e-18 | 86.7 |
MsaG026850 | AT3G52440.2 | 61.404 | 57 | 21 | 1 | 133 | 188 | 41 | 97 | 1.23e-18 | 85.1 |
MsaG026850 | AT5G62940.1 | 67.347 | 49 | 16 | 0 | 137 | 185 | 75 | 123 | 6.44e-18 | 84.7 |
MsaG026850 | AT4G21050.1 | 50.725 | 69 | 32 | 1 | 120 | 188 | 11 | 77 | 2.76e-17 | 80.1 |
MsaG026850 | AT2G46590.1 | 59.615 | 52 | 21 | 0 | 131 | 182 | 64 | 115 | 2.80e-17 | 82.8 |
MsaG026850 | AT2G46590.2 | 59.615 | 52 | 21 | 0 | 131 | 182 | 76 | 127 | 3.03e-17 | 82.8 |
MsaG026850 | AT4G21040.1 | 55.769 | 52 | 23 | 0 | 137 | 188 | 27 | 78 | 4.82e-15 | 74.3 |
MsaG026850 | AT4G21080.1 | 55.769 | 52 | 23 | 0 | 137 | 188 | 27 | 78 | 1.83e-14 | 73.2 |
Find 69 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAGTACTGTCTTGAAATT+TGG | 0.139556 | 5:-30244196 | MsaT026850.1:CDS |
TTTCAATGGATTTGCATCTA+TGG | 0.224783 | 5:-30243780 | MsaT026850.1:CDS |
GTTCCAAGTAAACCTACTTT+AGG | 0.234419 | 5:-30243953 | MsaT026850.1:CDS |
AAACCCTTTGCATCTTCATT+AGG | 0.263138 | 5:+30243842 | None:intergenic |
TCTTCAATTCTCAATTTCTT+AGG | 0.264262 | 5:+30243866 | None:intergenic |
GCAAAAGCTGCCAGAGATAC+TGG | 0.309128 | 5:-30244315 | MsaT026850.1:CDS |
ACCACCATAGTATGCTATAT+TGG | 0.313954 | 5:+30244024 | None:intergenic |
GGGAGTGTTTAAATCCTCTT+TGG | 0.317886 | 5:+30244546 | None:intergenic |
AACCCTTTGCATCTTCATTA+GGG | 0.318049 | 5:+30243843 | None:intergenic |
AATGAAGTTGAAGACATAAT+AGG | 0.357903 | 5:+30244163 | None:intergenic |
TTCCAAGTAAACCTACTTTA+GGG | 0.369270 | 5:-30243952 | MsaT026850.1:CDS |
TGCCAGAGATACTGGACTTC+CGG | 0.375392 | 5:-30244307 | MsaT026850.1:CDS |
TTCCCTAAAGTAGGTTTACT+TGG | 0.378626 | 5:+30243950 | None:intergenic |
ACATGATTCAAAGAGATATA+AGG | 0.401349 | 5:-30245030 | MsaT026850.1:intron |
CAACCCAATATAGCATACTA+TGG | 0.408858 | 5:-30244028 | MsaT026850.1:CDS |
CCACCATAGTATGCTATATT+GGG | 0.415830 | 5:+30244025 | None:intergenic |
ATCAATTTCAGGAACAATCA+AGG | 0.419402 | 5:-30244615 | MsaT026850.1:intron |
CCTTGATAAAGCTGCAGGAT+TGG | 0.440224 | 5:+30243709 | None:intergenic |
GACACAGGATAACACATTGC+TGG | 0.441391 | 5:+30244055 | None:intergenic |
TTCAATGGATTTGCATCTAT+GGG | 0.443267 | 5:-30243779 | MsaT026850.1:CDS |
TTGCATCTATGGGTGGTGAT+AGG | 0.444216 | 5:-30243769 | MsaT026850.1:CDS |
CTCCGGAAGTCCAGTATCTC+TGG | 0.452743 | 5:+30244305 | None:intergenic |
CTTGAATGTTTCCCTAAAGT+AGG | 0.465584 | 5:+30243941 | None:intergenic |
CTCAATAAGGCTTGAAGATG+TGG | 0.477034 | 5:+30244522 | None:intergenic |
CATACTTCTCGTGGTTCCTC+CGG | 0.479008 | 5:+30244288 | None:intergenic |
GAAGTTTCTGTTTCTGATGA+GGG | 0.482071 | 5:+30244487 | None:intergenic |
TTTGCCAAGAAAATGAATGT+TGG | 0.488827 | 5:-30244142 | MsaT026850.1:CDS |
TAACACATTGCTGGGTTCCA+TGG | 0.491823 | 5:+30244064 | None:intergenic |
TTTGAAGAATTCACTTCAAG+TGG | 0.499476 | 5:+30245056 | None:intergenic |
GTGGTTGTTTAGTCCCATCA+TGG | 0.499829 | 5:-30244006 | MsaT026850.1:CDS |
GCAGAAATGACGGGGCTGGT+TGG | 0.501715 | 5:+30244336 | None:intergenic |
TATATCTCTTTGAATCATGT+TGG | 0.511854 | 5:+30245033 | None:intergenic |
TTCCCAATCAAATCCTCTCA+TGG | 0.512251 | 5:+30243675 | None:intergenic |
CCAATCCTGCAGCTTTATCA+AGG | 0.521791 | 5:-30243709 | MsaT026850.1:CDS |
AGAAGTATGCTTGTAGGTGC+AGG | 0.528984 | 5:-30244274 | MsaT026850.1:CDS |
AGAAGTTTCTGTTTCTGATG+AGG | 0.529077 | 5:+30244486 | None:intergenic |
TTAGGGAAACATTCAAGAGA+TGG | 0.534355 | 5:-30243935 | MsaT026850.1:CDS |
TTGACGATTATGTGAGGCAT+CGG | 0.539506 | 5:+30244219 | None:intergenic |
TAGGTTGTACGCTCCATGAT+GGG | 0.544678 | 5:+30243993 | None:intergenic |
TGAGACCTTGATAAAGCTGC+AGG | 0.554542 | 5:+30243704 | None:intergenic |
ATCGTAATCAAGTACTGAGG+TGG | 0.554962 | 5:+30244585 | None:intergenic |
CATAGTATGCTATATTGGGT+TGG | 0.557895 | 5:+30244029 | None:intergenic |
ACACAGGATAACACATTGCT+GGG | 0.569497 | 5:+30244056 | None:intergenic |
GAGAAATCTTGATGAGCAAG+AGG | 0.571155 | 5:+30245116 | None:intergenic |
GACCCTAATGAAGATGCAAA+GGG | 0.573223 | 5:-30243845 | MsaT026850.1:CDS |
CTAGGAAACAAGAGTGGTGG+AGG | 0.573390 | 5:-30243806 | MsaT026850.1:CDS |
ACCACGAGAAGTATGCTTGT+AGG | 0.578460 | 5:-30244280 | MsaT026850.1:CDS |
ATAGGTTGTACGCTCCATGA+TGG | 0.581466 | 5:+30243992 | None:intergenic |
AATAAGGCTTGAAGATGTGG+TGG | 0.584261 | 5:+30244525 | None:intergenic |
GGGTTCCATGGAAACTGTTG+TGG | 0.589831 | 5:+30244076 | None:intergenic |
AGACCCTAATGAAGATGCAA+AGG | 0.590368 | 5:-30243846 | MsaT026850.1:CDS |
GGTCTCATGTGTTCCATGAG+AGG | 0.592053 | 5:-30243688 | MsaT026850.1:CDS |
ACACAAGATTGAGTTGCGAT+AGG | 0.596525 | 5:+30243974 | None:intergenic |
ATTGGCTTTCAATACTGATG+AGG | 0.608635 | 5:+30243727 | None:intergenic |
TCGTAATCAAGTACTGAGGT+GGG | 0.612458 | 5:+30244586 | None:intergenic |
ATAAGGCTTGAAGATGTGGT+GGG | 0.622284 | 5:+30244526 | None:intergenic |
AGCCTCAAAACAAACCAAAG+AGG | 0.625789 | 5:-30244560 | MsaT026850.1:CDS |
AATGGATTTGCATCTATGGG+TGG | 0.631829 | 5:-30243776 | MsaT026850.1:CDS |
ACCTACAAGCATACTTCTCG+TGG | 0.650658 | 5:+30244279 | None:intergenic |
CCCAATATAGCATACTATGG+TGG | 0.653975 | 5:-30244025 | MsaT026850.1:CDS |
ACACTAGGAAACAAGAGTGG+TGG | 0.656394 | 5:-30243809 | MsaT026850.1:CDS |
AAATCTTGATGAGCAAGAGG+AGG | 0.659290 | 5:+30245119 | None:intergenic |
ATATTGGGTTGGAATGACAC+AGG | 0.664359 | 5:+30244040 | None:intergenic |
ACTCATTTGACGATTATGTG+AGG | 0.678683 | 5:+30244213 | None:intergenic |
CAGAGATACTGGACTTCCGG+AGG | 0.703877 | 5:-30244304 | MsaT026850.1:CDS |
GGGTGGTGATAGGAATCATG+TGG | 0.704890 | 5:-30243759 | MsaT026850.1:CDS |
AAGAGGAGGAGAAAACTCAG+AGG | 0.721417 | 5:+30245133 | None:intergenic |
TTCATCGTAATCAAGTACTG+AGG | 0.724323 | 5:+30244582 | None:intergenic |
TTAACACTAGGAAACAAGAG+TGG | 0.767808 | 5:-30243812 | MsaT026850.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 30243682 | 30245225 | 30243682 | ID=MsaG026850 |
Chr5 | mRNA | 30243682 | 30245225 | 30243682 | ID=MsaT026850.1;Parent=MsaG026850 |
Chr5 | exon | 30243682 | 30244626 | 30243682 | ID=MsaT026850.1.exon2;Parent=MsaT026850.1 |
Chr5 | CDS | 30243682 | 30244626 | 30243682 | ID=cds.MsaT026850.1;Parent=MsaT026850.1 |
Chr5 | exon | 30245031 | 30245225 | 30245031 | ID=MsaT026850.1.exon1;Parent=MsaT026850.1 |
Chr5 | CDS | 30245031 | 30245225 | 30245031 | ID=cds.MsaT026850.1;Parent=MsaT026850.1 |
Gene Sequence |
Protein sequence |