AlfalfaGEDB | MsaG026853

M. sativa ssp. caerulea / MsaG026853

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026853	XP_003613820.1	92.351	353	27	0	1	353	1	353	0.0	615

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026853	sp\|F4I274\|PHL8_ARATH	50.000	266	117	4	6	263	25	282	2.87e-74	236

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026853	tr\|G7KGL2\|G7KGL2_MEDTR	92.351	353	27	0	1	353	1	353	0.0	615

TFs/TRs:

Gene ID	Type	Classification
MsaG026853	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001434	MsaG026853	0.804307	3.880246e-49	5.789044e-47
MsaG003381	MsaG026853	0.817286	6.205763e-52	1.271735e-49
MsaG005201	MsaG026853	0.808599	4.875003e-50	8.048466e-48
MsaG005425	MsaG026853	0.803909	4.690137e-49	6.932886e-47
MsaG007116	MsaG026853	0.800721	2.112010e-48	2.902500e-46
MsaG007206	MsaG026853	0.802331	9.909880e-49	1.412616e-46
MsaG008081	MsaG026853	0.800354	2.506504e-48	3.416179e-46
MsaG008112	MsaG026853	0.801497	1.467742e-48	2.052724e-46
MsaG008193	MsaG026853	0.808728	4.577017e-50	7.580433e-48
MsaG008631	MsaG026853	0.804360	3.782657e-49	5.650448e-47
MsaG009140	MsaG026853	0.820115	1.424503e-52	3.142699e-50
MsaG009859	MsaG026853	0.807116	1.004095e-49	1.599845e-47
MsaG011405	MsaG026853	0.815413	1.621632e-51	3.167692e-49
MsaG013198	MsaG026853	0.800661	2.171228e-48	2.979885e-46
MsaG013916	MsaG026853	0.806792	1.174777e-49	1.857551e-47
MsaG016250	MsaG026853	0.805350	2.355645e-49	3.600442e-47
MsaG017459	MsaG026853	0.814852	2.157369e-51	4.154817e-49
MsaG017771	MsaG026853	0.806808	1.165734e-49	1.843926e-47
MsaG018670	MsaG026853	0.808422	5.315573e-50	8.738570e-48
MsaG019571	MsaG026853	0.811732	1.037290e-50	1.847989e-48
MsaG020469	MsaG026853	0.844434	1.418351e-58	6.378956e-56
MsaG022094	MsaG026853	0.815244	1.767224e-51	3.437412e-49
MsaG023341	MsaG026853	0.803689	5.207836e-49	7.659073e-47
MsaG024331	MsaG026853	0.811241	1.324024e-50	2.330659e-48
MsaG025714	MsaG026853	0.806197	1.566837e-49	2.442950e-47
MsaG026853	MsaG028664	0.805165	2.574059e-49	3.917467e-47
MsaG026853	MsaG028708	0.820419	1.214632e-52	2.701254e-50
MsaG026853	MsaG028711	0.828919	1.232235e-54	3.457718e-52
MsaG026853	MsaG029732	0.811505	1.161229e-50	2.057364e-48
MsaG026853	MsaG030237	0.809290	3.473827e-50	5.831228e-48
MsaG026853	MsaG031645	0.802355	9.800973e-49	1.397836e-46
MsaG026853	MsaG033312	0.808163	6.031536e-50	9.854276e-48
MsaG026853	MsaG034308	0.806770	1.187435e-49	1.876645e-47
MsaG026853	MsaG035118	0.819821	1.662575e-52	3.639083e-50
MsaG026853	MsaG035317	0.811567	1.126107e-50	1.998142e-48
MsaG026853	MsaG035377	0.817021	7.112835e-52	1.447691e-49
MsaG026853	MsaG044621	0.812368	7.548968e-51	1.366172e-48
MsaG026853	MsaG046786	0.808293	5.662207e-50	9.279558e-48
MsaG026853	MsaG002231	0.813350	4.610040e-51	8.549749e-49
MsaG026853	MsaG010534	0.814411	2.698294e-51	5.139302e-49
MsaG026853	MsaG018051	0.802424	9.488181e-49	1.355341e-46
MsaG026853	MsaG029394	0.810223	2.193275e-50	3.765856e-48
MsaG026853	MsaG034539	0.800557	2.279734e-48	3.121407e-46
MsaG026853	MsaG036648	0.802314	9.989701e-49	1.423425e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026853	MtrunA17_Chr5g0417521	92.351	353	27	0	1	353	1	353	0.0	615
MsaG026853	MtrunA17_Chr4g0042451	62.963	351	113	6	2	350	4	339	1.35e-131	379
MsaG026853	MtrunA17_Chr2g0321461	51.695	236	98	4	8	235	38	265	4.91e-70	224
MsaG026853	MtrunA17_Chr6g0461641	47.679	237	113	3	8	238	35	266	1.22e-64	210
MsaG026853	MtrunA17_Chr8g0356501	56.051	157	60	1	8	164	30	177	1.21e-50	172
MsaG026853	MtrunA17_Chr5g0409731	45.405	185	93	4	5	186	15	194	8.33e-47	160
MsaG026853	MtrunA17_Chr2g0310011	52.795	161	67	3	8	168	28	179	4.77e-45	157
MsaG026853	MtrunA17_Chr7g0254981	51.724	145	61	3	14	158	49	184	3.37e-43	150
MsaG026853	MtrunA17_Chr2g0290991	41.949	236	116	7	8	230	32	259	6.29e-42	148
MsaG026853	MtrunA17_Chr2g0291021	48.387	155	69	3	15	169	49	192	4.43e-39	141
MsaG026853	MtrunA17_Chr1g0197171	49.296	142	69	1	8	149	37	175	1.53e-38	139
MsaG026853	MtrunA17_Chr7g0261911	43.537	147	67	2	11	155	258	390	9.49e-37	138
MsaG026853	MtrunA17_Chr7g0274471	37.234	188	94	3	15	200	218	383	2.19e-35	134
MsaG026853	MtrunA17_Chr1g0190301	41.250	160	76	3	11	168	171	314	7.29e-35	131
MsaG026853	MtrunA17_Chr1g0175091	38.926	149	77	1	11	159	254	388	1.94e-32	125
MsaG026853	MtrunA17_Chr7g0258551	36.306	157	87	3	14	170	211	354	4.15e-30	118
MsaG026853	MtrunA17_Chr7g0242521	38.621	145	73	4	11	152	9	140	7.13e-24	98.6
MsaG026853	MtrunA17_Chr1g0175071	38.926	149	72	3	8	153	170	302	2.16e-22	96.3
MsaG026853	MtrunA17_Chr1g0175081	49.180	61	31	0	11	71	18	78	6.52e-19	80.9
MsaG026853	MtrunA17_Chr3g0095611	52.459	61	29	0	15	75	19	79	4.51e-17	79.0
MsaG026853	MtrunA17_Chr1g0210911	47.778	90	37	3	16	100	23	107	4.72e-17	81.3
MsaG026853	MtrunA17_Chr1g0162931	50.000	76	35	1	16	88	19	94	7.27e-17	79.7
MsaG026853	MtrunA17_Chr7g0243081	56.604	53	23	0	16	68	72	124	1.18e-16	80.1
MsaG026853	MtrunA17_Chr4g0009901	58.182	55	22	1	15	69	168	221	3.87e-16	77.4
MsaG026853	MtrunA17_Chr6g0479431	43.182	88	49	1	16	102	203	290	8.31e-16	77.8
MsaG026853	MtrunA17_Chr2g0283951	39.785	93	49	3	7	98	83	169	1.07e-15	77.4
MsaG026853	MtrunA17_Chr5g0410741	44.872	78	43	0	16	93	220	297	2.05e-15	77.0
MsaG026853	MtrunA17_Chr4g0009981	59.259	54	21	1	15	68	116	168	2.22e-15	75.1
MsaG026853	MtrunA17_Chr8g0379121	52.830	53	25	0	16	68	112	164	4.72e-15	75.9
MsaG026853	MtrunA17_Chr2g0320231	52.830	53	25	0	16	68	98	150	6.51e-15	75.1
MsaG026853	MtrunA17_Chr2g0288601	54.000	50	23	0	16	65	72	121	1.32e-14	70.1
MsaG026853	MtrunA17_Chr2g0294911	54.286	70	25	2	11	74	207	275	1.56e-14	74.7
MsaG026853	MtrunA17_Chr8g0366281	45.070	71	39	0	16	86	174	244	2.68e-14	73.2
MsaG026853	MtrunA17_Chr5g0402631	46.512	86	42	2	15	97	214	298	4.16e-14	72.4
MsaG026853	MtrunA17_Chr3g0109981	52.632	57	27	0	16	72	275	331	5.26e-14	72.8
MsaG026853	MtrunA17_Chr1g0154261	39.773	88	45	1	16	95	127	214	7.32e-14	71.2
MsaG026853	MtrunA17_Chr4g0009851	55.556	54	23	1	15	68	169	221	7.50e-14	71.6
MsaG026853	MtrunA17_Chr1g0161431	54.237	59	26	1	11	69	196	253	7.70e-14	72.8
MsaG026853	MtrunA17_Chr4g0067981	55.932	59	25	1	11	69	211	268	7.98e-14	72.8
MsaG026853	MtrunA17_Chr4g0045361	55.172	58	26	0	12	69	271	328	9.12e-14	72.0
MsaG026853	MtrunA17_Chr7g0255711	56.364	55	23	1	15	69	91	144	1.10e-13	70.9
MsaG026853	MtrunA17_Chr2g0304841	52.542	59	27	1	11	69	209	266	1.32e-13	72.0
MsaG026853	MtrunA17_Chr4g0031961	53.448	58	26	1	12	69	128	184	1.56e-13	70.5
MsaG026853	MtrunA17_Chr4g0062921	53.448	58	27	0	12	69	232	289	3.74e-13	70.1
MsaG026853	MtrunA17_Chr1g0198601	60.000	55	22	0	15	69	211	265	5.53e-13	69.3
MsaG026853	MtrunA17_Chr4g0009991	56.250	48	20	1	18	65	70	116	1.25e-12	64.3
MsaG026853	MtrunA17_Chr7g0258531	32.847	137	79	3	15	150	213	337	3.03e-12	67.0
MsaG026853	MtrunA17_Chr7g0275401	53.704	54	24	1	15	68	192	244	7.04e-12	65.5
MsaG026853	MtrunA17_Chr5g0422621	54.545	55	25	0	15	69	198	252	1.84e-11	64.7
MsaG026853	MtrunA17_Chr5g0400241	43.939	66	36	1	17	82	313	377	6.14e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026853	AT1G69580.1	50.000	266	117	4	6	263	25	282	2.91e-75	236
MsaG026853	AT1G69580.2	49.813	267	117	4	6	263	25	283	1.98e-74	234
MsaG026853	AT5G18240.1	53.043	230	98	4	8	232	38	262	2.38e-68	220
MsaG026853	AT5G18240.4	53.043	230	98	4	8	232	38	262	2.38e-68	220
MsaG026853	AT3G04030.3	53.913	230	96	4	8	232	38	262	1.13e-67	218
MsaG026853	AT5G18240.5	52.174	230	98	5	8	232	38	260	6.91e-65	211
MsaG026853	AT3G04030.2	53.043	230	97	5	8	232	38	261	1.41e-64	210
MsaG026853	AT5G18240.2	50.870	230	97	5	8	232	38	256	1.41e-61	202
MsaG026853	AT5G18240.3	50.870	230	97	5	8	232	38	256	1.41e-61	202
MsaG026853	AT3G04030.1	51.739	230	95	5	8	232	38	256	7.65e-61	200
MsaG026853	AT3G24120.1	45.575	226	115	4	8	226	34	258	5.31e-57	187
MsaG026853	AT4G13640.1	46.121	232	103	6	8	227	30	251	6.65e-57	187
MsaG026853	AT3G24120.2	44.978	229	115	5	8	226	34	261	8.74e-55	182
MsaG026853	AT4G13640.2	45.532	235	103	7	8	227	30	254	1.16e-54	181
MsaG026853	AT1G79430.2	56.688	157	59	3	8	164	27	174	2.77e-51	174
MsaG026853	AT5G45580.1	43.902	164	86	2	9	166	1	164	1.24e-41	146
MsaG026853	AT5G45580.2	43.902	164	86	2	9	166	17	180	2.14e-41	146
MsaG026853	AT2G01060.1	41.204	216	93	7	14	229	14	195	1.33e-40	144
MsaG026853	AT3G12730.1	48.701	154	71	3	8	159	16	163	1.70e-40	142
MsaG026853	AT3G04030.5	48.691	191	88	4	47	232	1	186	3.78e-40	144
MsaG026853	AT4G28610.1	43.243	148	73	2	14	161	224	360	2.18e-35	134
MsaG026853	AT3G04450.4	42.568	148	76	2	11	158	194	332	3.34e-35	133
MsaG026853	AT3G04450.2	42.568	148	76	2	11	158	194	332	3.34e-35	133
MsaG026853	AT5G29000.1	43.333	150	66	3	14	158	187	322	3.98e-35	132
MsaG026853	AT5G29000.3	43.333	150	66	3	14	158	187	322	3.98e-35	132
MsaG026853	AT3G04450.1	42.568	148	76	2	11	158	234	372	4.89e-35	133
MsaG026853	AT5G18240.6	46.073	191	87	5	47	232	1	180	5.00e-35	130
MsaG026853	AT5G29000.2	43.333	150	66	3	14	158	230	365	7.85e-35	132
MsaG026853	AT3G04030.4	46.073	191	87	5	47	232	1	180	1.48e-33	126
MsaG026853	AT5G06800.2	40.972	144	77	2	15	158	192	327	2.85e-31	122
MsaG026853	AT5G06800.1	40.972	144	72	2	15	158	192	322	2.97e-31	122
MsaG026853	AT3G13040.3	44.595	148	65	4	11	153	237	372	9.43e-31	121
MsaG026853	AT3G13040.1	44.595	148	65	4	11	153	237	372	9.43e-31	121
MsaG026853	AT3G13040.2	44.595	148	65	4	11	153	237	372	9.43e-31	121
MsaG026853	AT2G20400.2	41.830	153	68	3	15	162	231	367	1.25e-29	117
MsaG026853	AT2G20400.1	41.176	153	68	3	15	162	231	366	4.30e-29	116
MsaG026853	AT1G79430.1	52.542	118	47	3	47	164	1	109	7.14e-28	110
MsaG026853	AT3G04450.3	57.377	61	26	0	11	71	234	294	7.20e-21	92.0
MsaG026853	AT2G01060.2	37.222	180	79	7	50	229	1	146	8.87e-21	90.1
MsaG026853	AT5G29000.4	56.897	58	25	0	14	71	230	287	1.94e-20	90.9
MsaG026853	AT2G06020.1	54.098	61	28	0	11	71	82	142	2.65e-18	84.7
MsaG026853	AT5G06800.3	56.140	57	25	0	15	71	192	248	3.51e-18	84.0
MsaG026853	AT1G14600.1	58.491	53	22	0	16	68	24	76	1.27e-17	82.0
MsaG026853	AT3G12730.2	42.609	115	58	3	47	159	1	109	2.01e-17	79.7
MsaG026853	AT2G02060.2	52.459	61	29	0	16	76	30	90	7.79e-17	79.7
MsaG026853	AT2G02060.1	52.459	61	29	0	16	76	30	90	7.79e-17	79.7
MsaG026853	AT1G32240.1	44.872	78	43	0	16	93	214	291	6.67e-16	78.6
MsaG026853	AT1G32240.2	44.872	78	43	0	16	93	214	291	7.78e-16	78.2
MsaG026853	AT2G38300.1	56.604	53	23	0	16	68	55	107	1.21e-15	77.4
MsaG026853	AT4G04605.1	52.830	53	25	0	16	68	15	67	1.64e-15	75.1
MsaG026853	AT2G42660.1	50.000	64	29	1	16	79	51	111	4.83e-15	74.7
MsaG026853	AT2G40260.1	50.847	59	29	0	16	74	83	141	7.66e-15	75.5
MsaG026853	AT4G17695.1	40.698	86	51	0	16	101	165	250	1.17e-14	74.3
MsaG026853	AT5G59570.2	53.448	58	26	1	12	69	138	194	2.47e-14	73.2
MsaG026853	AT5G59570.1	53.448	58	26	1	12	69	138	194	2.47e-14	73.2
MsaG026853	AT5G16560.1	52.632	57	27	0	16	72	220	276	2.54e-14	73.9
MsaG026853	AT5G05090.1	56.364	55	23	1	15	69	81	134	4.48e-14	72.0
MsaG026853	AT2G40970.1	55.172	58	25	1	12	69	102	158	4.77e-14	71.6
MsaG026853	AT3G10760.1	56.364	55	23	1	15	69	105	158	5.65e-14	72.4
MsaG026853	AT3G46640.2	54.545	55	24	1	15	69	144	197	7.64e-14	72.0
MsaG026853	AT3G46640.1	54.545	55	24	1	15	69	144	197	7.64e-14	72.0
MsaG026853	AT3G16857.3	56.364	55	23	1	15	69	167	220	8.05e-14	73.2
MsaG026853	AT5G42630.2	51.786	56	27	0	16	71	106	161	8.08e-14	70.5
MsaG026853	AT3G16857.2	56.364	55	23	1	15	69	237	290	9.34e-14	72.8
MsaG026853	AT3G16857.1	56.364	55	23	1	15	69	237	290	9.36e-14	72.8
MsaG026853	AT3G46640.3	54.545	55	24	1	15	69	144	197	9.37e-14	71.6
MsaG026853	AT5G42630.1	51.786	56	27	0	16	71	106	161	1.06e-13	70.9
MsaG026853	AT1G25550.1	55.172	58	26	0	12	69	206	263	3.26e-13	70.1
MsaG026853	AT1G49560.1	60.000	55	22	0	15	69	192	246	3.90e-13	70.1
MsaG026853	AT3G25790.1	49.206	63	32	0	20	82	201	263	6.06e-13	69.7
MsaG026853	AT1G68670.1	56.897	58	25	0	12	69	212	269	6.98e-13	69.3
MsaG026853	AT4G04580.1	45.588	68	36	1	1	68	1	67	1.10e-12	65.9
MsaG026853	AT2G03500.1	51.724	58	28	0	12	69	230	287	2.34e-12	68.2
MsaG026853	AT4G37180.1	52.830	53	25	0	17	69	212	264	2.75e-12	67.4
MsaG026853	AT4G37180.2	52.830	53	25	0	17	69	219	271	3.01e-12	67.4
MsaG026853	AT5G58080.1	54.237	59	26	1	11	69	190	247	6.56e-12	67.0
MsaG026853	AT2G01760.3	50.909	55	26	1	15	69	135	188	8.18e-12	65.9
MsaG026853	AT2G01760.1	50.909	55	26	1	15	69	200	253	1.33e-11	65.5
MsaG026853	AT2G01760.2	50.909	55	26	1	15	69	228	281	1.71e-11	65.5
MsaG026853	AT1G67710.3	45.588	68	32	1	17	79	121	188	2.01e-11	65.5
MsaG026853	AT1G13300.1	46.269	67	36	0	15	81	181	247	2.38e-11	64.7
MsaG026853	AT1G67710.2	45.588	68	32	1	17	79	130	197	2.59e-11	65.1
MsaG026853	AT1G67710.1	45.588	68	32	1	17	79	195	262	2.63e-11	65.1
MsaG026853	AT5G44190.1	50.000	54	26	1	15	68	147	199	4.31e-11	63.9
MsaG026853	AT3G62670.1	46.774	62	29	1	11	68	207	268	5.19e-11	63.9
MsaG026853	AT5G44190.2	50.000	54	26	1	15	68	147	199	5.49e-11	63.5
MsaG026853	AT5G45580.3	33.636	110	67	2	63	166	16	125	8.47e-11	61.6
MsaG026853	AT1G49560.2	50.000	64	30	1	15	78	192	253	9.45e-11	62.0
MsaG026853	AT1G25550.2	51.852	54	26	0	12	65	206	259	9.81e-11	62.4

Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTACTCAGTGATTTGATTC+TGG	0.263617	5:-30335557	None:intergenic
TGCATTGTTCATCACAGCTC+TGG	0.288853	5:-30335512	None:intergenic
ATCACTCTCATAATACTCTT+TGG	0.312893	5:-30335029	None:intergenic
TGGAACTTCTTTGTGTTCAT+TGG	0.313469	5:+30336239	MsaT026853.1:CDS
TTCACTTGAATTGCCACTAA+TGG	0.314380	5:+30336353	MsaT026853.1:CDS
CAGAGTAGGTTTCTAGTTGT+TGG	0.316123	5:-30335210	None:intergenic
AAAATGGGAATACCTGTAAA+TGG	0.318364	5:-30335088	None:intergenic
AGTCCATGTCATTCTGATAT+TGG	0.338286	5:-30336581	None:intergenic
AAACATTCATTAGAAGAAAT+AGG	0.341588	5:+30336306	MsaT026853.1:CDS
ATGAATCTTTGATGAAGTTC+AGG	0.350611	5:-30334850	None:intergenic
CCATCTCAAGAGCCATTTAC+AGG	0.357774	5:+30335076	MsaT026853.1:CDS
AATGAAGAAACTAAATTTGA+TGG	0.358160	5:+30336471	MsaT026853.1:CDS
AAGGCGCAGGAAGCCCTCTC+TGG	0.407977	5:+30336063	MsaT026853.1:CDS
GGATACAATTCTTCACCAAT+TGG	0.409885	5:+30336084	MsaT026853.1:CDS
TTGTTCTTTGTTGTCAGAGT+AGG	0.427163	5:-30335224	None:intergenic
AAAAGATGAACTATCTCAAT+TGG	0.428317	5:+30336119	MsaT026853.1:CDS
TTCTGAAAGCTCAGAGAGAA+AGG	0.437681	5:+30336278	MsaT026853.1:CDS
GCATTGTTCATCACAGCTCT+GGG	0.440802	5:-30335511	None:intergenic
GCAGCAGAGAATTCAGTCTT+GGG	0.443647	5:+30335532	MsaT026853.1:CDS
TCAGGAGTCCATTTGAGTCT+TGG	0.444862	5:-30334832	None:intergenic
GATTCTGTTAGATCTGAGAT+TGG	0.449789	5:-30336174	None:intergenic
ATGCAAAACCAAGACTCAAA+TGG	0.458131	5:+30334824	MsaT026853.1:CDS
TCTGAGTGCATGGCCATTAG+TGG	0.458598	5:-30336366	None:intergenic
TCATGCTCTAGAAATGCAAA+TGG	0.465824	5:+30335701	MsaT026853.1:CDS
TGCAGCAGAGAATTCAGTCT+TGG	0.471008	5:+30335531	MsaT026853.1:CDS
ATTGATGCAATTAATCAACT+TGG	0.481050	5:+30334871	MsaT026853.1:CDS
ATGAGAGTGATGGAAATTCC+AGG	0.483319	5:+30335041	MsaT026853.1:CDS
AATTCAAGTAATGAAGTCAA+TGG	0.496765	5:+30336438	MsaT026853.1:CDS
TTTACAATCGGTACTAATGA+AGG	0.497419	5:+30336044	MsaT026853.1:CDS
ATTCAAGTAATGAAGTCAAT+GGG	0.502262	5:+30336439	MsaT026853.1:CDS
AGATCTGAGATTGGAGAGCT+TGG	0.504006	5:-30336165	None:intergenic
TCAAGGAAAATATTTACAAT+CGG	0.522599	5:+30336032	MsaT026853.1:CDS
AGATGGTACAAAGTAAGTCC+TGG	0.523577	5:-30335059	None:intergenic
GAAACTTAATGAACAAATTG+AGG	0.524227	5:+30335734	MsaT026853.1:CDS
GATGCAATTAATCAACTTGG+AGG	0.524466	5:+30334874	MsaT026853.1:CDS
TGATTTCTCTTCTGAGTGCA+TGG	0.534501	5:-30336376	None:intergenic
CCTGTAAATGGCTCTTGAGA+TGG	0.548306	5:-30335076	None:intergenic
AGGGTTAAGTTTAAACTATG+AGG	0.556660	5:+30336200	MsaT026853.1:CDS
ATGTTGAGAATTATTCATCA+AGG	0.558934	5:+30336499	MsaT026853.1:CDS
AAAGAGTATTATGAGAGTGA+TGG	0.559147	5:+30335031	MsaT026853.1:CDS
CAGCTTCGAATCGAAGCTCA+AGG	0.569311	5:+30336015	MsaT026853.1:CDS
TGAAACACAGACACAGACAT+TGG	0.582394	5:-30336408	None:intergenic
ATCGGTACTAATGAAGGCGC+AGG	0.585210	5:+30336050	MsaT026853.1:CDS
TGAAGAATTGTATCCAGAGA+GGG	0.597554	5:-30336076	None:intergenic
GGTTGTAGAAATATAGACTT+GGG	0.601442	5:+30335182	MsaT026853.1:intron
GTGAAGAATTGTATCCAGAG+AGG	0.605279	5:-30336077	None:intergenic
CAGCAGAGAATTCAGTCTTG+GGG	0.619399	5:+30335533	MsaT026853.1:CDS
TGGTTGTAGAAATATAGACT+TGG	0.620704	5:+30335181	MsaT026853.1:intron
TCAGATCTAACAGAATCAAG+AGG	0.622910	5:+30336180	MsaT026853.1:CDS
TACTCTGACAACAAAGAACA+AGG	0.633344	5:+30335226	MsaT026853.1:CDS
AAATGCAAATGGAAGTAGAG+AGG	0.633743	5:+30335712	MsaT026853.1:CDS
CAGATCTAACAGAATCAAGA+GGG	0.636389	5:+30336181	MsaT026853.1:CDS
TATTCATCAAGGAAAAGATG+CGG	0.666950	5:+30336510	MsaT026853.1:CDS
TAGCCAATATCAGAATGACA+TGG	0.678287	5:+30336578	MsaT026853.1:CDS
AGCAGAGAATTCAGTCTTGG+GGG	0.712643	5:+30335534	MsaT026853.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	30334787	30336662	30334787	ID=MsaG026853
Chr5	mRNA	30334787	30336662	30334787	ID=MsaT026853.1;Parent=MsaG026853
Chr5	exon	30334787	30334904	30334787	ID=MsaT026853.1.exon1;Parent=MsaT026853.1
Chr5	CDS	30334787	30334904	30334787	ID=cds.MsaT026853.1;Parent=MsaT026853.1
Chr5	exon	30335021	30335097	30335021	ID=MsaT026853.1.exon2;Parent=MsaT026853.1
Chr5	CDS	30335021	30335097	30335021	ID=cds.MsaT026853.1;Parent=MsaT026853.1
Chr5	exon	30335190	30335247	30335190	ID=MsaT026853.1.exon3;Parent=MsaT026853.1
Chr5	CDS	30335190	30335247	30335190	ID=cds.MsaT026853.1;Parent=MsaT026853.1
Chr5	exon	30335499	30335574	30335499	ID=MsaT026853.1.exon4;Parent=MsaT026853.1
Chr5	CDS	30335499	30335574	30335499	ID=cds.MsaT026853.1;Parent=MsaT026853.1
Chr5	exon	30335686	30335755	30335686	ID=MsaT026853.1.exon5;Parent=MsaT026853.1
Chr5	CDS	30335686	30335755	30335686	ID=cds.MsaT026853.1;Parent=MsaT026853.1
Chr5	exon	30336000	30336662	30336000	ID=MsaT026853.1.exon6;Parent=MsaT026853.1
Chr5	CDS	30336000	30336662	30336000	ID=cds.MsaT026853.1;Parent=MsaT026853.1

Gene Sequence

>MsaT026853.1

ATGCAGAATCAAAGTATGCATTTTGTTCTATCCACTGATGCAAAACCAAGACTCAAATGGACTCCTGAACTTCATCAAAGATTCATTGATGCAATTAATCAACTTGGAGGTGCAGCTAAAGCAACACCAAAGAGTATTATGAGAGTGATGGAAATTCCAGGACTTACTTTGTACCATCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGAAACCTACTCTGACAACAAAGAACAAGTGTACACAGAAACCCAGAGCTGTGATGAACAATGCAGCAGAGAATTCAGTCTTGGGGGCCAGAATCAAATCACTGAAAACATGGAGATATCTCATGCTCTAGAAATGCAAATGGAAGTAGAGAGGAAACTTAATGAACAAATTGAGGTGCAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGAAAATATTTACAATCGGTACTAATGAAGGCGCAGGAAGCCCTCTCTGGATACAATTCTTCACCAATTGGAATAAAACTGACAAAAGATGAACTATCTCAATTGGTTACTATGATCAACAATGCTTGTCCAAGCTCTCCAATCTCAGATCTAACAGAATCAAGAGGGTTAAGTTTAAACTATGAGGAGAAAAAACAAGACAATGGAACTTCTTTGTGTTCATTGGATAGTTCTTTGACATCTTCTGAAAGCTCAGAGAGAAAGGAAGAGAAACATTCATTAGAAGAAATAGGAGACTTCAAAAATTCTAGTGCTATTTCACTTGAATTGCCACTAATGGCCATGCACTCAGAAGAGAAATCATTGTCGTGTCCAATGTCTGTGTCTGTGTTTCATAGCGATAATTCAAGTAATGAAGTCAATGGGAGAAAGAGAAATGAAGAAACTAAATTTGATGGTAGCTATGTTGAGAATTATTCATCAAGGAAAAGATGCGGCAACAAGTTGAAGAAAGCTAAGTTGTCAGAAAAGTTTGACTTGAATAGCCAATATCAGAATGACATGGACTCAACAAGTTCAAAAACGTTATTAGACTTAAATTGCAGTTTAAACTTTTGTGAACCATGA

Protein sequence

>MsaT026853.1

MQNQSMHFVLSTDAKPRLKWTPELHQRFIDAINQLGGAAKATPKSIMRVMEIPGLTLYHLKSHLQKYRLGKSQQLETYSDNKEQVYTETQSCDEQCSREFSLGGQNQITENMEISHALEMQMEVERKLNEQIEVQKHLQLRIEAQGKYLQSVLMKAQEALSGYNSSPIGIKLTKDELSQLVTMINNACPSSPISDLTESRGLSLNYEEKKQDNGTSLCSLDSSLTSSESSERKEEKHSLEEIGDFKNSSAISLELPLMAMHSEEKSLSCPMSVSVFHSDNSSNEVNGRKRNEETKFDGSYVENYSSRKRCGNKLKKAKLSEKFDLNSQYQNDMDSTSSKTLLDLNCSLNFCEP*