AlfalfaGEDB | MsaG026939

M. sativa ssp. caerulea / MsaG026939

KEGG: K13944 K21994
GO: GO:0001101 GO:0002831 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0032101 GO:0032870 GO:0042221 GO:0043900 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080134 GO:1900150 GO:1901700 GO:1901701
PFAM: PF03195.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	XP_013451538.1	86.792	212	18	2	1	202	1	212	6.94e-115	336

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	sp\|Q9SRV3\|LBD20_ARATH	70.139	144	39	1	38	177	50	193	2.75e-63	200

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	tr\|A0A072U858\|A0A072U858_MEDTR	86.792	212	18	2	1	202	1	212	3.32e-115	336

TFs/TRs:

Gene ID	Type	Classification
MsaG026939	TF	LOB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001027	MsaG026939	0.804954	2.847878e-49	4.312945e-47
MsaG001371	MsaG026939	0.826590	4.444142e-54	1.168277e-51
MsaG004656	MsaG026939	0.817347	6.014298e-52	1.234388e-49
MsaG005641	MsaG026939	0.810939	1.538431e-50	2.688070e-48
MsaG006240	MsaG026939	0.808493	5.134570e-50	8.455559e-48
MsaG011216	MsaG026939	0.800840	1.996979e-48	2.751720e-46
MsaG011508	MsaG026939	0.800286	2.586813e-48	3.520135e-46
MsaG015145	MsaG026939	0.800037	2.905831e-48	3.932127e-46
MsaG016550	MsaG026939	0.805321	2.387999e-49	3.647480e-47
MsaG017839	MsaG026939	0.801433	1.512780e-48	2.112661e-46
MsaG018897	MsaG026939	0.820780	1.004516e-52	2.255310e-50
MsaG019118	MsaG026939	0.803415	5.934247e-49	8.672006e-47
MsaG019122	MsaG026939	0.802943	7.423347e-49	1.073054e-46
MsaG019480	MsaG026939	0.800313	2.554491e-48	3.478319e-46
MsaG023689	MsaG026939	0.809872	2.608105e-50	4.440109e-48
MsaG026939	MsaG028600	0.809811	2.687602e-50	4.568881e-48
MsaG026939	MsaG041982	0.821059	8.671029e-53	1.961306e-50
MsaG026939	MsaG044303	0.814966	2.035854e-51	3.932169e-49
MsaG026939	MsaG044938	0.801556	1.427981e-48	1.999767e-46
MsaG026939	MsaG045535	0.831484	2.934268e-55	8.862379e-53
MsaG026939	MsaG011821	0.805673	2.016470e-49	3.105317e-47
MsaG026939	MsaG033077	0.820539	1.140140e-52	2.543659e-50
MsaG026939	MsaG040992	0.801987	1.165828e-48	1.648742e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	MtrunA17_Chr6g0460951	86.792	212	18	2	1	202	1	212	6.38e-119	336
MsaG026939	MtrunA17_Chr7g0260971	67.961	103	33	0	38	140	13	115	8.60e-47	153
MsaG026939	MtrunA17_Chr1g0184271	60.169	118	45	1	39	156	12	127	4.13e-46	152
MsaG026939	MtrunA17_Chr8g0351701	67.647	102	33	0	39	140	23	124	6.36e-46	151
MsaG026939	MtrunA17_Chr7g0261031	67.647	102	33	0	38	139	7	108	8.35e-46	150
MsaG026939	MtrunA17_Chr1g0184281	65.347	101	35	0	39	139	15	115	2.97e-45	149
MsaG026939	MtrunA17_Chr8g0351721	59.664	119	47	1	39	156	18	136	7.46e-44	145
MsaG026939	MtrunA17_Chr5g0435641	53.782	119	55	0	38	156	6	124	1.51e-43	144
MsaG026939	MtrunA17_Chr7g0245871	61.765	102	39	0	39	140	27	128	4.97e-43	144
MsaG026939	MtrunA17_Chr6g0460941	68.182	88	28	0	39	126	7	94	7.50e-41	134
MsaG026939	MtrunA17_Chr4g0058651	55.046	109	48	1	38	146	10	117	5.31e-38	129
MsaG026939	MtrunA17_Chr6g0449641	51.724	116	53	2	38	153	8	120	1.18e-36	125
MsaG026939	MtrunA17_Chr3g0117121	54.545	110	47	2	38	147	9	115	1.76e-36	126
MsaG026939	MtrunA17_Chr7g0227511	54.808	104	46	1	38	141	10	112	1.20e-35	123
MsaG026939	MtrunA17_Chr4g0043421	41.447	152	79	3	38	183	14	161	1.21e-35	123
MsaG026939	MtrunA17_Chr2g0311601	45.378	119	64	1	27	145	1	118	1.10e-34	120
MsaG026939	MtrunA17_Chr3g0114061	43.262	141	71	2	38	170	7	146	1.11e-34	120
MsaG026939	MtrunA17_Chr3g0129071	51.786	112	53	1	37	148	45	155	1.16e-34	122
MsaG026939	MtrunA17_Chr3g0106101	50.962	104	50	1	38	141	6	108	4.41e-34	119
MsaG026939	MtrunA17_Chr7g0245861	64.444	90	30	2	39	126	12	101	7.08e-34	117
MsaG026939	MtrunA17_Chr5g0438091	41.611	149	86	1	1	149	1	148	7.23e-34	119
MsaG026939	MtrunA17_Chr6g0449651	49.138	116	56	2	38	153	66	178	7.92e-34	119
MsaG026939	MtrunA17_Chr5g0402611	54.369	103	46	1	38	140	7	108	4.28e-33	120
MsaG026939	MtrunA17_Chr5g0437401	51.456	103	49	1	38	140	10	111	4.93e-33	116
MsaG026939	MtrunA17_Chr4g0030001	38.650	163	91	4	36	191	21	181	1.16e-32	116
MsaG026939	MtrunA17_Chr5g0437571	46.218	119	61	2	38	156	5	120	2.44e-32	114
MsaG026939	MtrunA17_Chr3g0115431	52.427	103	48	1	38	140	8	109	6.50e-32	115
MsaG026939	MtrunA17_Chr3g0097221	47.009	117	58	2	38	154	6	118	1.43e-30	113
MsaG026939	MtrunA17_Chr3g0113891	48.980	98	49	1	38	135	13	109	4.10e-30	109
MsaG026939	MtrunA17_Chr5g0432451	52.778	108	50	1	37	144	41	147	8.79e-29	107
MsaG026939	MtrunA17_Chr8g0353981	58.537	82	33	1	38	119	6	86	4.19e-28	105
MsaG026939	MtrunA17_Chr1g0200201	44.348	115	61	2	40	153	73	185	1.08e-27	104
MsaG026939	MtrunA17_Chr5g0444351	44.545	110	60	1	36	145	2	110	3.29e-27	100
MsaG026939	MtrunA17_Chr7g0225111	42.727	110	62	1	36	145	2	110	3.50e-27	100
MsaG026939	MtrunA17_Chr8g0374601	45.714	105	56	1	36	140	23	126	4.24e-26	101
MsaG026939	MtrunA17_Chr8g0374591	39.815	108	64	1	33	140	2	108	1.94e-23	90.9
MsaG026939	MtrunA17_Chr8g0374581	36.641	131	77	3	34	163	3	128	7.36e-21	86.7
MsaG026939	MtrunA17_Chr4g0059901	41.584	101	58	1	40	140	11	110	3.04e-20	85.5
MsaG026939	MtrunA17_Chr8g0342351	38.614	101	61	1	40	140	13	112	4.58e-19	82.4
MsaG026939	MtrunA17_Chr2g0330201	37.624	101	62	1	40	140	20	119	1.28e-18	81.6
MsaG026939	MtrunA17_Chr6g0452691	45.679	81	42	2	40	119	10	89	4.04e-18	78.2
MsaG026939	MtrunA17_Chr6g0452671	36.634	101	63	1	40	140	12	111	9.08e-18	77.8
MsaG026939	MtrunA17_Chr4g0040831	36.190	105	63	2	40	141	16	119	1.88e-17	77.0
MsaG026939	MtrunA17_Chr6g0452661	33.945	109	67	3	36	140	3	110	4.31e-16	74.3
MsaG026939	MtrunA17_Chr4g0055441	41.975	81	45	2	40	119	3	82	5.22e-15	69.3
MsaG026939	MtrunA17_Chr2g0326041	51.852	54	25	1	36	89	30	82	5.65e-15	67.4
MsaG026939	MtrunA17_Chr5g0439111	30.247	162	92	7	36	180	3	160	8.25e-14	67.8
MsaG026939	MtrunA17_Chr2g0326051	35.714	98	52	3	85	171	5	102	8.28e-11	57.4
MsaG026939	MtrunA17_Chr4g0046201	30.682	88	60	1	40	127	7	93	9.18e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	AT3G03760.1	70.139	144	39	1	38	177	50	193	2.79e-64	200
MsaG026939	AT2G42430.1	54.605	152	50	2	38	170	14	165	1.37e-48	159
MsaG026939	AT3G58190.1	61.017	118	45	1	39	156	11	127	9.98e-47	153
MsaG026939	AT5G06080.1	48.611	144	65	1	38	181	6	140	7.01e-44	145
MsaG026939	AT2G42440.1	52.672	131	59	1	38	168	6	133	7.32e-43	144
MsaG026939	AT4G00220.1	63.462	104	38	0	42	145	20	123	8.66e-43	143
MsaG026939	AT2G45420.1	64.423	104	37	0	42	145	40	143	9.60e-43	144
MsaG026939	AT2G31310.1	58.824	102	42	0	38	139	6	107	4.22e-42	140
MsaG026939	AT4G00210.1	61.765	102	39	0	39	140	11	112	4.50e-41	139
MsaG026939	AT2G45410.1	49.286	140	62	3	42	179	19	151	5.12e-38	130
MsaG026939	AT3G27650.1	55.769	104	45	1	38	141	38	140	1.83e-36	125
MsaG026939	AT5G63090.4	53.211	109	50	1	38	146	10	117	1.49e-35	124
MsaG026939	AT5G63090.3	53.211	109	50	1	38	146	10	117	1.49e-35	124
MsaG026939	AT5G63090.2	53.211	109	50	1	38	146	10	117	1.49e-35	124
MsaG026939	AT5G63090.1	53.211	109	50	1	38	146	10	117	1.49e-35	124
MsaG026939	AT1G16530.1	49.541	109	53	2	37	144	12	119	1.64e-33	118
MsaG026939	AT2G30130.1	47.934	121	60	2	38	158	7	124	2.62e-33	118
MsaG026939	AT2G30340.1	47.863	117	58	2	37	153	50	163	3.46e-33	120
MsaG026939	AT2G30340.2	47.863	117	58	2	37	153	51	164	3.90e-33	120
MsaG026939	AT5G66870.1	45.070	142	73	2	38	179	6	142	4.02e-33	120
MsaG026939	AT1G07900.1	44.538	119	63	2	36	153	30	146	3.37e-32	115
MsaG026939	AT3G11090.1	48.077	104	53	1	38	141	10	112	3.57e-31	112
MsaG026939	AT2G28500.1	46.847	111	56	2	36	145	52	160	5.29e-31	113
MsaG026939	AT1G31320.1	45.378	119	64	1	27	145	1	118	1.54e-30	110
MsaG026939	AT1G65620.1	54.369	103	46	1	38	140	8	109	1.97e-29	108
MsaG026939	AT1G65620.4	54.369	103	46	1	38	140	8	109	1.97e-29	108
MsaG026939	AT1G65620.3	54.369	103	46	1	38	140	8	109	1.97e-29	108
MsaG026939	AT1G65620.5	54.369	103	46	1	38	140	8	109	1.97e-29	108
MsaG026939	AT1G65620.2	54.369	103	46	1	38	140	8	109	1.97e-29	108
MsaG026939	AT2G23660.2	45.192	104	56	1	38	141	4	106	3.51e-28	108
MsaG026939	AT2G23660.3	45.192	104	56	1	38	141	4	106	3.51e-28	108
MsaG026939	AT2G23660.1	45.192	104	56	1	38	141	4	106	3.51e-28	108
MsaG026939	AT3G26660.1	44.444	108	52	2	40	140	6	112	8.66e-28	102
MsaG026939	AT3G26620.1	44.444	108	52	2	40	140	6	112	1.41e-27	101
MsaG026939	AT2G40470.2	51.667	120	56	2	37	156	18	135	1.65e-27	103
MsaG026939	AT2G40470.1	51.667	120	56	2	37	156	43	160	1.99e-27	103
MsaG026939	AT3G50510.1	39.450	109	65	1	32	140	5	112	1.09e-23	93.6
MsaG026939	AT3G50510.2	39.450	109	65	1	32	140	5	112	1.09e-23	93.6
MsaG026939	AT3G13850.1	32.298	161	103	2	40	200	37	191	3.31e-20	85.9
MsaG026939	AT1G72980.1	38.835	103	62	1	38	140	12	113	2.75e-19	82.4
MsaG026939	AT5G35900.1	33.663	101	66	1	40	140	6	105	6.83e-16	73.2
MsaG026939	AT3G47870.1	32.673	101	67	1	40	140	37	136	1.01e-14	71.6
MsaG026939	AT1G06280.1	42.667	75	42	1	40	114	25	98	1.62e-14	69.7
MsaG026939	AT4G22700.1	32.292	96	62	2	40	134	6	99	8.87e-13	64.7

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTGAAACGGCGGCTGATA+TGG	0.240934	5:+31658646	None:intergenic
AGGCTAGCTGATCCGGTTTA+TGG	0.264632	5:-31658906	MsaT026939.1:CDS
AACAACTTCAACCCTGGTTT+TGG	0.284974	5:-31658565	MsaT026939.1:CDS
CATTCTTGCTTTGCAGCAAC+AGG	0.339538	5:-31658871	MsaT026939.1:intron
GGTGGTGATGGTAGTAGTTC+GGG	0.392136	5:-31659209	MsaT026939.1:CDS
TGCATCTTTGCACCCTACTT+TGG	0.399115	5:-31659065	MsaT026939.1:CDS
TAGCCTAGCTTGAGCCTCAT+AGG	0.409914	5:+31658923	None:intergenic
ATGGTAGTAGTTCGGGAAAC+AGG	0.414773	5:-31659202	MsaT026939.1:CDS
ATTGAAACGGCGGCTGATAT+GGG	0.422968	5:+31658647	None:intergenic
GCGGCTGTGCACAAGGTGTT+TGG	0.424834	5:-31659017	MsaT026939.1:CDS
AAATAGTCGCCGCAGCTTCA+TGG	0.427210	5:+31658946	None:intergenic
TGAAGTTGTTCATATTCATA+AGG	0.429426	5:+31658578	None:intergenic
AAACTCAATTGATGAATAAG+AGG	0.436075	5:-31658702	MsaT026939.1:CDS
AGGTGGTGATGGTAGTAGTT+CGG	0.439949	5:-31659210	MsaT026939.1:CDS
TCAAGCTAGGCTAGCTGATC+CGG	0.442761	5:-31658913	MsaT026939.1:CDS
GTTGTTCATATTCATAAGGT+TGG	0.472998	5:+31658582	None:intergenic
TTGAGGAGGAAGTGTAGTAG+TGG	0.488789	5:-31659089	MsaT026939.1:CDS
GGCTACAAGCTCTGTGATGA+AGG	0.492816	5:+31658523	None:intergenic
GCACCACACGGAGATATAAT+CGG	0.498285	5:+31659122	None:intergenic
GTGGACACACAACCATAAAC+CGG	0.504022	5:+31658894	None:intergenic
TCCATTGTGAGGCCAAAACC+AGG	0.513069	5:+31658553	None:intergenic
GGTGGAAGCAGATGAGTTGT+TGG	0.513070	5:+31658606	None:intergenic
GTTCATATTCATAAGGTTGG+TGG	0.513150	5:+31658585	None:intergenic
CCAAGGTGCTGCTAAGTTTG+CGG	0.527615	5:-31659036	MsaT026939.1:CDS
CATATTCATAAGGTTGGTGG+TGG	0.528819	5:+31658588	None:intergenic
CTGTTGCTGCAAAGCAAGAA+TGG	0.532688	5:+31658872	None:intergenic
AAATGCTGCAAAGCGTGCAA+TGG	0.533586	5:-31659165	MsaT026939.1:CDS
AATATGAACAACTTCAACCC+TGG	0.543651	5:-31658571	MsaT026939.1:CDS
ACCTTGGTCAGTACCAAAGT+AGG	0.553693	5:+31659052	None:intergenic
TCGCCGCAGCTTCATGGCGA+TGG	0.568449	5:+31658952	None:intergenic
GCTGGCTGCACAAATTGAAA+CGG	0.572987	5:+31658634	None:intergenic
GCTGAGTCACAAGGTGGTGA+TGG	0.582631	5:-31659221	MsaT026939.1:CDS
TTTCCTATGAGGCTCAAGCT+AGG	0.592261	5:-31658926	MsaT026939.1:CDS
TAAGTTTGCGGCTGTGCACA+AGG	0.594059	5:-31659024	MsaT026939.1:CDS
TGCGGCGACTATTTCCTATG+AGG	0.598387	5:-31658937	MsaT026939.1:CDS
CCTTGGTCAGTACCAAAGTA+GGG	0.599955	5:+31659053	None:intergenic
CCGCAAACTTAGCAGCACCT+TGG	0.604003	5:+31659036	None:intergenic
TTGAAACGGCGGCTGATATG+GGG	0.604833	5:+31658648	None:intergenic
GATGAGTTGTTGGAATATGC+TGG	0.605347	5:+31658616	None:intergenic
CCCTACTTTGGTACTGACCA+AGG	0.613176	5:-31659053	MsaT026939.1:CDS
TAACCATCGCCATGAAGCTG+CGG	0.616919	5:-31658955	MsaT026939.1:CDS
GTGGTGCTTGCAAGTTCTTG+AGG	0.646814	5:-31659106	MsaT026939.1:CDS
GGCTGCACAAATTGAAACGG+CGG	0.671846	5:+31658637	None:intergenic
GGTGGCAGCTATGCAAGCAG+AGG	0.672106	5:-31658737	MsaT026939.1:CDS
TCTGTGATGGCTGAGTCACA+AGG	0.673947	5:-31659230	None:intergenic
GTGCTTGCAAGTTCTTGAGG+AGG	0.680170	5:-31659103	MsaT026939.1:CDS
AAGAACTTGCAAGCACCACA+CGG	0.685626	5:+31659110	None:intergenic
GCGATGGTTAGCGAGAACGT+TGG	0.688497	5:+31658968	None:intergenic
CCATTGTGAGGCCAAAACCA+GGG	0.697828	5:+31658554	None:intergenic
AAGGTGTTGTCTCCATTGTG+AGG	0.699953	5:+31658542	None:intergenic
TTGCTGCAAAGCAAGAATGG+TGG	0.702855	5:+31658875	None:intergenic
GAACCGATTATATCTCCGTG+TGG	0.743633	5:-31659125	MsaT026939.1:CDS
GTGATGGCTGAGTCACAAGG+TGG	0.752882	5:-31659227	MsaT026939.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	31658525	31659246	31658525	ID=MsaG026939
Chr5	mRNA	31658525	31659246	31658525	ID=MsaT026939.1;Parent=MsaG026939
Chr5	exon	31658525	31658758	31658525	ID=MsaT026939.1.exon2;Parent=MsaT026939.1
Chr5	CDS	31658525	31658758	31658525	ID=cds.MsaT026939.1;Parent=MsaT026939.1
Chr5	exon	31658872	31659246	31658872	ID=MsaT026939.1.exon1;Parent=MsaT026939.1
Chr5	CDS	31658872	31659246	31658872	ID=cds.MsaT026939.1;Parent=MsaT026939.1

Gene Sequence

>MsaT026939.1

ATGGCTGAGTCACAAGGTGGTGATGGTAGTAGTTCGGGAAACAGGCGCAATAAAAGCGCAAATGCTGCAAAGCGTGCAATGGCAAGAGCAACACAAGATGAACCGATTATATCTCCGTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTAGTGGATGCATCTTTGCACCCTACTTTGGTACTGACCAAGGTGCTGCTAAGTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCGAAGCACTTGTCCAACGTTCTCGCTAACCATCGCCATGAAGCTGCGGCGACTATTTCCTATGAGGCTCAAGCTAGGCTAGCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCAGCTATGCAAGCAGAGGTCTCAATGATGCAAACTCAATTGATGAATAAGAGGCTTGCATATGCAAATGCAAGTACTCTTCAAACCCCATATCAGCCGCCGTTTCAATTTGTGCAGCCAGCATATTCCAACAACTCATCTGCTTCCACCACCAACCTTATGAATATGAACAACTTCAACCCTGGTTTTGGCCTCACAATGGAGACAACACCTTCATCACAGAGCTTGTAG

Protein sequence

>MsaT026939.1

MAESQGGDGSSSGNRRNKSANAAKRAMARATQDEPIISPCGACKFLRRKCSSGCIFAPYFGTDQGAAKFAAVHKVFGASNVSKHLSNVLANHRHEAAATISYEAQARLADPVYGCVSTILALQQQVAAMQAEVSMMQTQLMNKRLAYANASTLQTPYQPPFQFVQPAYSNNSSASTTNLMNMNNFNPGFGLTMETTPSSQSL*