AlfalfaGEDB | MsaG026939

M. sativa ssp. caerulea / MsaG026939

KEGG: K13944 K21994
GO: GO:0001101 GO:0002831 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0032101 GO:0032870 GO:0042221 GO:0043900 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080134 GO:1900150 GO:1901700 GO:1901701
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	XP_013451538.1	86.792	212	18	2	1	202	1	212	6.94e-115	336

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	sp\|Q9SRV3\|LBD20_ARATH	70.139	144	39	1	38	177	50	193	2.75e-63	200

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	tr\|A0A072U858\|A0A072U858_MEDTR	86.792	212	18	2	1	202	1	212	3.32e-115	336

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TFs/TRs:

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Gene ID	Type	Classification
MsaG026939	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001027	MsaG026939	0.804954	2.847878e-49	4.312945e-47
MsaG001371	MsaG026939	0.826590	4.444142e-54	1.168277e-51
MsaG004656	MsaG026939	0.817347	6.014298e-52	1.234388e-49
MsaG005641	MsaG026939	0.810939	1.538431e-50	2.688070e-48
MsaG006240	MsaG026939	0.808493	5.134570e-50	8.455559e-48
MsaG011216	MsaG026939	0.800840	1.996979e-48	2.751720e-46
MsaG011508	MsaG026939	0.800286	2.586813e-48	3.520135e-46
MsaG015145	MsaG026939	0.800037	2.905831e-48	3.932127e-46
MsaG016550	MsaG026939	0.805321	2.387999e-49	3.647480e-47
MsaG017839	MsaG026939	0.801433	1.512780e-48	2.112661e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	MtrunA17_Chr6g0460951	86.792	212	18	2	1	202	1	212	6.38e-119	336
MsaG026939	MtrunA17_Chr7g0260971	67.961	103	33	0	38	140	13	115	8.60e-47	153
MsaG026939	MtrunA17_Chr1g0184271	60.169	118	45	1	39	156	12	127	4.13e-46	152
MsaG026939	MtrunA17_Chr8g0351701	67.647	102	33	0	39	140	23	124	6.36e-46	151
MsaG026939	MtrunA17_Chr7g0261031	67.647	102	33	0	38	139	7	108	8.35e-46	150
MsaG026939	MtrunA17_Chr1g0184281	65.347	101	35	0	39	139	15	115	2.97e-45	149
MsaG026939	MtrunA17_Chr8g0351721	59.664	119	47	1	39	156	18	136	7.46e-44	145
MsaG026939	MtrunA17_Chr5g0435641	53.782	119	55	0	38	156	6	124	1.51e-43	144
MsaG026939	MtrunA17_Chr7g0245871	61.765	102	39	0	39	140	27	128	4.97e-43	144
MsaG026939	MtrunA17_Chr6g0460941	68.182	88	28	0	39	126	7	94	7.50e-41	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026939	AT3G03760.1	70.139	144	39	1	38	177	50	193	2.79e-64	200
MsaG026939	AT2G42430.1	54.605	152	50	2	38	170	14	165	1.37e-48	159
MsaG026939	AT3G58190.1	61.017	118	45	1	39	156	11	127	9.98e-47	153
MsaG026939	AT5G06080.1	48.611	144	65	1	38	181	6	140	7.01e-44	145
MsaG026939	AT2G42440.1	52.672	131	59	1	38	168	6	133	7.32e-43	144
MsaG026939	AT4G00220.1	63.462	104	38	0	42	145	20	123	8.66e-43	143
MsaG026939	AT2G45420.1	64.423	104	37	0	42	145	40	143	9.60e-43	144
MsaG026939	AT2G31310.1	58.824	102	42	0	38	139	6	107	4.22e-42	140
MsaG026939	AT4G00210.1	61.765	102	39	0	39	140	11	112	4.50e-41	139
MsaG026939	AT2G45410.1	49.286	140	62	3	42	179	19	151	5.12e-38	130

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Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAATTGATGAATAAG+AGG	0.436075	5:-31658702	MsaT026939.1:CDS
AAATAGTCGCCGCAGCTTCA+TGG	0.427210	5:+31658946	None:intergenic
AAATGCTGCAAAGCGTGCAA+TGG	0.533586	5:-31659165	MsaT026939.1:CDS
AACAACTTCAACCCTGGTTT+TGG	0.284974	5:-31658565	MsaT026939.1:CDS
AAGAACTTGCAAGCACCACA+CGG	0.685626	5:+31659110	None:intergenic
AAGGTGTTGTCTCCATTGTG+AGG	0.699953	5:+31658542	None:intergenic
AATATGAACAACTTCAACCC+TGG	0.543651	5:-31658571	MsaT026939.1:CDS
AATTGAAACGGCGGCTGATA+TGG	0.240934	5:+31658646	None:intergenic
ACCTTGGTCAGTACCAAAGT+AGG	0.553693	5:+31659052	None:intergenic
AGGCTAGCTGATCCGGTTTA+TGG	0.264632	5:-31658906	MsaT026939.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	31658525	31659246	31658525	ID=MsaG026939
Chr5	mRNA	31658525	31659246	31658525	ID=MsaT026939.1;Parent=MsaG026939
Chr5	exon	31658525	31658758	31658525	ID=MsaT026939.1.exon2;Parent=MsaT026939.1
Chr5	CDS	31658525	31658758	31658525	ID=cds.MsaT026939.1;Parent=MsaT026939.1
Chr5	exon	31658872	31659246	31658872	ID=MsaT026939.1.exon1;Parent=MsaT026939.1
Chr5	CDS	31658872	31659246	31658872	ID=cds.MsaT026939.1;Parent=MsaT026939.1

Gene Sequence

>MsaT026939.1

ATGGCTGAGTCACAAGGTGGTGATGGTAGTAGTTCGGGAAACAGGCGCAATAAAAGCGCAAATGCTGCAAAGCGTGCAATGGCAAGAGCAACACAAGATGAACCGATTATATCTCCGTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTAGTGGATGCATCTTTGCACCCTACTTTGGTACTGACCAAGGTGCTGCTAAGTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCGAAGCACTTGTCCAACGTTCTCGCTAACCATCGCCATGAAGCTGCGGCGACTATTTCCTATGAGGCTCAAGCTAGGCTAGCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCAGCTATGCAAGCAGAGGTCTCAATGATGCAAACTCAATTGATGAATAAGAGGCTTGCATATGCAAATGCAAGTACTCTTCAAACCCCATATCAGCCGCCGTTTCAATTTGTGCAGCCAGCATATTCCAACAACTCATCTGCTTCCACCACCAACCTTATGAATATGAACAACTTCAACCCTGGTTTTGGCCTCACAATGGAGACAACACCTTCATCACAGAGCTTGTAG

Protein sequence

>MsaT026939.1

MAESQGGDGSSSGNRRNKSANAAKRAMARATQDEPIISPCGACKFLRRKCSSGCIFAPYFGTDQGAAKFAAVHKVFGASNVSKHLSNVLANHRHEAAATISYEAQARLADPVYGCVSTILALQQQVAAMQAEVSMMQTQLMNKRLAYANASTLQTPYQPPFQFVQPAYSNNSSASTTNLMNMNNFNPGFGLTMETTPSSQSL*