AlfalfaGEDB | MsaG026969

M. sativa ssp. caerulea / MsaG026969

KEGG: K09338
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043565 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026969	XP_003613642.1	98.305	236	4	0	1	236	48	283	3.87e-169	477

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026969	sp\|Q8LC03\|ATB13_ARATH	65.447	246	67	6	1	236	57	294	1.74e-100	296

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026969	tr\|G7KB59\|G7KB59_MEDTR	98.305	236	4	0	1	236	48	283	1.85e-169	477

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TFs/TRs:

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Gene ID	Type	Classification
MsaG026969	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000465	MsaG026969	0.821234	7.904609e-53	1.796224e-50
MsaG003729	MsaG026969	0.833007	1.237021e-55	3.905614e-53
MsaG007858	MsaG026969	0.802307	1.002421e-48	1.428087e-46
MsaG017972	MsaG026969	0.800966	1.883063e-48	2.602062e-46
MsaG018105	MsaG026969	0.814444	2.652905e-51	5.057075e-49
MsaG018554	MsaG026969	0.821774	5.938407e-53	1.368860e-50
MsaG023678	MsaG026969	0.836616	1.542620e-56	5.423880e-54
MsaG023816	MsaG026969	0.808873	4.262113e-50	7.083504e-48
MsaG026969	MsaG035287	0.800713	2.119649e-48	2.912463e-46
MsaG026969	MsaG039795	0.809582	3.008628e-50	5.086452e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026969	MtrunA17_Chr5g0416391	98.305	236	4	0	1	236	48	283	3.56e-173	477
MsaG026969	MtrunA17_Chr8g0362151	86.498	237	27	4	1	236	50	282	5.19e-134	378
MsaG026969	MtrunA17_Chr6g0453021	53.469	245	72	6	1	233	58	272	2.00e-73	224
MsaG026969	MtrunA17_Chr7g0217111	52.766	235	94	7	1	229	48	271	1.49e-68	212
MsaG026969	MtrunA17_Chr8g0381741	44.886	176	88	3	18	191	40	208	9.57e-39	136
MsaG026969	MtrunA17_Chr6g0450991	64.000	100	36	0	26	125	63	162	3.51e-38	134
MsaG026969	MtrunA17_Chr3g0123691	57.500	120	48	1	17	133	47	166	7.12e-38	134
MsaG026969	MtrunA17_Chr3g0119291	54.225	142	54	2	15	145	44	185	1.53e-37	132
MsaG026969	MtrunA17_Chr5g0415941	60.169	118	46	1	8	125	66	182	2.27e-37	133
MsaG026969	MtrunA17_Chr8g0362751	66.667	96	32	0	30	125	89	184	8.44e-37	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026969	AT1G69780.1	65.447	246	67	6	1	236	57	294	1.77e-101	296
MsaG026969	AT1G26960.1	61.712	222	59	6	17	236	58	255	2.63e-85	254
MsaG026969	AT3G01220.1	52.941	221	81	6	15	229	70	273	1.35e-67	210
MsaG026969	AT5G15150.1	47.137	227	80	7	17	229	100	300	1.72e-56	182
MsaG026969	AT5G65310.2	50.602	166	75	3	18	176	39	204	1.65e-41	143
MsaG026969	AT5G65310.1	50.602	166	75	3	18	176	57	222	2.70e-41	143
MsaG026969	AT4G40060.1	57.143	133	52	3	11	139	39	170	8.10e-38	134
MsaG026969	AT2G22430.1	67.010	97	32	0	29	125	61	157	1.55e-37	133
MsaG026969	AT3G01470.1	63.000	100	37	0	26	125	64	163	9.73e-37	130
MsaG026969	AT1G27045.1	44.737	152	77	2	4	148	41	192	4.56e-28	107

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Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTGTTGCTCCAACCA+TGG	0.592621	5:-32440997	None:intergenic
AACCATATAGCAACTTGTCT+AGG	0.569003	5:-32439663	None:intergenic
AACCTAGACAAGTTGCTATA+TGG	0.331625	5:+32439661	MsaT026969.1:CDS
AACCTGAACAAAGAAACAGA+AGG	0.692102	5:+32440709	MsaT026969.1:CDS
AAGCTGGAGAGAAGAAGAGG+AGG	0.613532	5:+32439538	MsaT026969.1:CDS
AGCTGAGCAATTCCACCTGA+AGG	0.558857	5:-32440862	None:intergenic
AGGGTCTGCTTGTTGTATGT+TGG	0.541270	5:-32440819	None:intergenic
ATCCTTCTGTTTCTTTGTTC+AGG	0.195256	5:-32440711	None:intergenic
ATGCCAAAAGATTGATCAAA+TGG	0.403921	5:+32440915	MsaT026969.1:CDS
CACAAGCTGGAGAGAAGAAG+AGG	0.557400	5:+32439535	MsaT026969.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	32439462	32441026	32439462	ID=MsaG026969
Chr5	mRNA	32439462	32441026	32439462	ID=MsaT026969.1;Parent=MsaG026969
Chr5	exon	32439462	32439815	32439462	ID=MsaT026969.1.exon1;Parent=MsaT026969.1
Chr5	CDS	32439462	32439815	32439462	ID=cds.MsaT026969.1;Parent=MsaT026969.1
Chr5	exon	32440670	32441026	32440670	ID=MsaT026969.1.exon2;Parent=MsaT026969.1
Chr5	CDS	32440670	32441026	32440670	ID=cds.MsaT026969.1;Parent=MsaT026969.1

Gene Sequence

>MsaT026969.1

ATGTCATTTTCATCAGGGATTGAACTTGGAGAAGAAGCAAATATACCTGAAGAAGATTTATCAGATGATGGATCACAAGCTGGAGAGAAGAAGAGGAGGCTTAATATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAACTTGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTAACTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGGGCTAGATGGAAGACAAAGCAGTTGGAAAAAGACTATGATGTTCTTAAAAGACAATATGATGCTATTAAGTTAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAAGCTGAGATATTGGCATTGAAAAATAGAGAACCAACAGAATCAATCAACCTGAACAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAGAACAGTTCAGATATCAAGTTGGATATGTCAAGAACACCAGCAAGTGATAGTCCTCTTTCTACACACCAACATACAACAAGCAGACCCTTCTTTCCACCATCTTCTAGGCCTTCAGGTGGAATTGCTCAGCTTTTCCAAACTTCTTCAAGGCCAGAAATTCAATGCCAAAAGATTGATCAAATGGTCAAAGAAGAAAGTTTAAGCAATATGTTTTGTGGCATGGATGATCAAGCTGGATTTTGGCCATGGTTGGAGCAACAACATTTCAATTGA

Protein sequence

>MsaT026969.1

MSFSSGIELGEEANIPEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDMSRTPASDSPLSTHQHTTSRPFFPPSSRPSGGIAQLFQTSSRPEIQCQKIDQMVKEESLSNMFCGMDDQAGFWPWLEQQHFN*