AlfalfaGEDB | MsaG027011

M. sativa ssp. caerulea / MsaG027011

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027011	AES96536.1	94.720	322	8	1	1	322	12	324	0.0	617

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027011	sp\|Q02283\|HAT5_ARATH	44.444	216	85	6	40	246	30	219	1.99e-41	148

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027011	tr\|G7K9R5\|G7K9R5_MEDTR	94.720	322	8	1	1	322	12	324	0.0	617

TFs/TRs:

Gene ID	Type	Classification
MsaG027011	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000063	MsaG027011	0.809940	2.522364e-50	4.301220e-48
MsaG002718	MsaG027011	0.801983	1.168100e-48	1.651800e-46
MsaG003768	MsaG027011	0.811000	1.492600e-50	2.611860e-48
MsaG005329	MsaG027011	0.865911	8.393221e-65	8.223190e-62
MsaG011080	MsaG027011	0.833255	1.074079e-55	3.416217e-53
MsaG018438	MsaG027011	0.802311	1.000610e-48	1.425635e-46
MsaG018913	MsaG027011	0.832687	1.484775e-55	4.644085e-53
MsaG027011	MsaG033994	0.816553	9.047621e-52	1.819356e-49
MsaG027011	MsaG042458	0.816019	1.189554e-51	2.359668e-49
MsaG027011	MsaG044584	0.804612	3.354750e-49	5.040240e-47
MsaG027011	MsaG045549	0.803550	5.564497e-49	8.157473e-47
MsaG027011	MsaG046498	0.823089	2.949509e-53	7.043847e-51
MsaG027011	MsaG018378	0.836203	1.962204e-56	6.814159e-54
MsaG027011	MsaG034262	0.821318	7.560102e-53	1.721762e-50
MsaG027011	MsaG030550	0.807245	9.434590e-50	1.507759e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027011	MtrunA17_Chr5g0415941	94.720	322	8	1	1	322	12	324	0.0	617
MsaG027011	MtrunA17_Chr8g0362751	52.134	328	96	8	1	322	14	286	2.22e-95	284
MsaG027011	MtrunA17_Chr4g0060031	48.311	296	130	8	34	322	56	335	1.45e-75	235
MsaG027011	MtrunA17_Chr6g0450991	46.701	197	91	3	76	269	67	252	4.93e-42	147
MsaG027011	MtrunA17_Chr8g0381741	60.656	122	44	2	66	186	43	161	8.82e-40	142
MsaG027011	MtrunA17_Chr6g0453021	42.975	242	96	10	28	250	41	259	2.93e-39	139
MsaG027011	MtrunA17_Chr3g0123691	60.526	114	41	1	59	172	47	156	4.03e-38	137
MsaG027011	MtrunA17_Chr3g0119291	53.901	141	49	2	76	201	59	198	5.52e-38	135
MsaG027011	MtrunA17_Chr8g0362151	53.333	135	61	1	39	171	38	172	5.74e-37	134
MsaG027011	MtrunA17_Chr5g0416391	60.169	118	46	1	55	171	55	172	8.68e-37	133
MsaG027011	MtrunA17_Chr7g0217111	58.559	111	44	1	63	171	65	175	2.09e-32	121
MsaG027011	MtrunA17_Chr7g0265521	55.670	97	36	1	76	172	63	152	7.86e-27	105
MsaG027011	MtrunA17_Chr1g0179581	55.208	96	36	1	71	166	23	111	2.36e-26	100
MsaG027011	MtrunA17_Chr3g0127511	54.945	91	41	0	78	168	40	130	8.09e-26	103
MsaG027011	MtrunA17_Chr8g0346251	48.544	103	52	1	80	182	45	146	9.66e-26	103
MsaG027011	MtrunA17_Chr5g0403701	60.563	71	28	0	76	146	53	123	7.69e-20	86.3
MsaG027011	MtrunA17_Chr4g0055851	46.281	121	52	4	56	174	103	212	2.65e-19	86.3
MsaG027011	MtrunA17_Chr5g0399491	39.535	172	77	6	9	174	78	228	2.68e-19	86.7
MsaG027011	MtrunA17_Chr5g0403691	60.563	71	28	0	76	146	53	123	2.69e-19	85.1
MsaG027011	MtrunA17_Chr5g0400781	45.794	107	49	2	64	170	113	210	1.40e-17	81.3
MsaG027011	MtrunA17_Chr4g0071411	46.154	91	42	1	79	169	91	174	1.58e-17	80.1
MsaG027011	MtrunA17_Chr8g0335131	48.515	101	44	2	76	175	146	239	3.13e-17	80.9
MsaG027011	MtrunA17_Chr2g0308611	44.340	106	52	1	64	169	188	286	4.21e-17	80.9
MsaG027011	MtrunA17_Chr7g0258831	47.872	94	42	1	76	169	160	246	4.45e-17	80.1
MsaG027011	MtrunA17_Chr1g0175651	46.809	94	43	1	76	169	154	240	3.02e-16	77.8
MsaG027011	MtrunA17_Chr4g0054421	43.925	107	52	2	63	169	115	213	8.35e-16	76.3
MsaG027011	MtrunA17_Chr1g0151971	46.316	95	44	1	76	170	130	217	1.48e-15	75.9
MsaG027011	MtrunA17_Chr4g0044091	37.879	132	61	3	76	206	65	176	1.79e-15	73.9
MsaG027011	MtrunA17_Chr3g0135331	48.611	72	37	0	76	147	145	216	3.65e-13	68.9
MsaG027011	MtrunA17_Chr2g0299031	41.489	94	48	1	76	169	82	168	2.21e-12	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027011	AT3G01470.1	44.444	216	85	6	40	246	30	219	2.03e-42	148
MsaG027011	AT4G40060.1	54.615	130	53	2	65	191	45	171	3.68e-41	145
MsaG027011	AT2G22430.1	68.041	97	31	0	76	172	62	158	5.04e-39	140
MsaG027011	AT1G69780.1	64.545	110	38	1	63	171	71	180	1.65e-38	138
MsaG027011	AT5G65310.2	68.041	97	31	0	76	172	54	150	1.99e-38	138
MsaG027011	AT5G65310.1	68.041	97	31	0	76	172	72	168	2.18e-38	138
MsaG027011	AT3G01220.1	49.068	161	68	3	39	187	46	204	2.39e-37	135
MsaG027011	AT5G15150.1	60.000	115	44	1	55	169	96	208	1.63e-36	134
MsaG027011	AT1G26960.1	59.091	110	44	1	63	171	57	166	7.71e-34	125
MsaG027011	AT1G27045.1	46.939	147	60	3	26	172	36	164	1.08e-32	121
MsaG027011	AT1G27045.5	60.825	97	38	0	76	172	25	121	1.07e-31	117
MsaG027011	AT1G27045.3	60.825	97	38	0	76	172	25	121	1.07e-31	117
MsaG027011	AT1G27045.2	60.825	97	38	0	76	172	17	113	1.41e-31	117
MsaG027011	AT1G27045.4	46.259	147	60	4	26	172	36	163	2.22e-30	115
MsaG027011	AT2G46680.1	49.541	109	55	0	72	180	28	136	3.30e-28	110
MsaG027011	AT3G61890.1	53.191	94	44	0	79	172	33	126	4.91e-27	106
MsaG027011	AT2G46680.2	44.800	125	68	1	72	196	28	151	8.03e-27	106
MsaG027011	AT5G03790.1	53.608	97	38	1	76	172	77	166	1.81e-25	102
MsaG027011	AT5G03790.2	54.839	93	35	1	76	168	77	162	2.38e-24	98.2
MsaG027011	AT2G36610.1	47.222	108	42	2	73	172	68	168	7.29e-24	96.7
MsaG027011	AT4G36740.1	51.429	105	42	2	76	180	55	150	3.47e-22	93.2
MsaG027011	AT4G36740.2	51.429	105	42	2	76	180	56	151	3.51e-22	93.2
MsaG027011	AT2G18550.1	45.378	119	58	1	76	194	61	172	1.80e-21	91.3
MsaG027011	AT5G53980.1	46.392	97	52	0	76	172	11	107	7.38e-21	87.8
MsaG027011	AT5G66700.1	58.333	72	30	0	76	147	71	142	3.82e-20	87.8
MsaG027011	AT5G06710.1	48.421	95	42	1	76	170	190	277	4.53e-17	81.3
MsaG027011	AT4G17460.1	45.217	115	49	4	64	175	125	228	1.16e-16	79.3
MsaG027011	AT2G01430.1	39.706	136	64	4	39	169	103	225	1.81e-16	78.6
MsaG027011	AT5G47370.1	39.695	131	64	3	46	175	107	223	2.40e-16	78.2
MsaG027011	AT2G44910.1	47.000	100	45	2	76	174	163	255	4.71e-16	77.8
MsaG027011	AT3G60390.1	47.000	100	45	2	76	174	162	254	7.19e-16	77.4
MsaG027011	AT2G22800.1	45.263	95	45	1	76	170	113	200	1.25e-15	76.3
MsaG027011	AT4G37790.1	44.681	94	45	1	76	169	126	212	2.37e-15	75.5
MsaG027011	AT4G16780.1	46.000	100	46	2	76	174	129	221	2.40e-15	75.5
MsaG027011	AT5G06710.4	58.491	53	22	0	76	128	190	242	1.56e-12	67.0
MsaG027011	AT1G70920.1	43.299	97	48	1	73	169	66	155	2.10e-12	65.9
MsaG027011	AT1G70920.2	43.299	97	48	1	73	169	36	125	2.48e-12	65.1
MsaG027011	AT2G01430.2	41.053	95	45	3	39	128	103	191	4.11e-12	65.1

Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATGAAAATTCTTGTAATTT+TGG	0.015177	5:+33273893	MsaT027011.1:CDS
TCAATTGCAAATTCAGAAAA+TGG	0.146571	5:+33273602	MsaT027011.1:CDS
CTGAAGCCCTTGAATCTCTT+TGG	0.177337	5:+33272218	MsaT027011.1:CDS
TGAACCTTGCCCTTCTGTTT+TGG	0.204900	5:-33272942	None:intergenic
GCAAGTTGAACTTTCCTATC+AGG	0.270065	5:-33272877	None:intergenic
TAGCAAACATCTTCAACTTT+TGG	0.273698	5:-33273860	None:intergenic
TTCTCTTTCTCTATATCTCT+TGG	0.295443	5:-33273509	None:intergenic
TGAAGCCCTTGAATCTCTTT+GGG	0.300479	5:+33272219	MsaT027011.1:CDS
TGAGGTGAATTGATTGCTTC+TGG	0.314138	5:-33273551	None:intergenic
CAAAGTGTCACTCCATAATA+TGG	0.334237	5:+33273628	MsaT027011.1:CDS
AACCAAGGCAAGTTGCTATA+TGG	0.341312	5:+33272917	MsaT027011.1:CDS
GTGGAAATTTAAATTCAATA+AGG	0.341810	5:-33273950	None:intergenic
CAAAAGGTTTGATCTTCAAC+AGG	0.362492	5:-33273920	None:intergenic
TTTCTCAAGTTGTTGAAAGA+AGG	0.381022	5:-33272731	None:intergenic
TCTCTTTCTCTATATCTCTT+GGG	0.387856	5:-33273508	None:intergenic
GATAGCCCACATTGCAATGA+TGG	0.423802	5:+33273707	MsaT027011.1:CDS
ATTGGATCTTTGTTGTTATG+AGG	0.430991	5:-33273569	None:intergenic
TTCTCAAGTTGTTGAAAGAA+GGG	0.453337	5:-33272730	None:intergenic
GCAATTGAGATTATATCCAT+TGG	0.455432	5:-33273587	None:intergenic
CATATTATGGAGTGACACTT+TGG	0.455719	5:-33273627	None:intergenic
GTTCAACTTGCAAAAGAGCT+TGG	0.481261	5:+33272889	MsaT027011.1:CDS
AACCATATAGCAACTTGCCT+TGG	0.481745	5:-33272919	None:intergenic
TGTGAGAAATCTGAATGATC+AGG	0.485138	5:-33273782	None:intergenic
CAATTGCAAATTCAGAAAAT+GGG	0.487982	5:+33273603	MsaT027011.1:CDS
GAATGACAAGTTAAAAGAAG+AGG	0.495747	5:+33273050	MsaT027011.1:CDS
TCAATAAGGCCAGAAACAAA+AGG	0.504416	5:-33273936	None:intergenic
AAAACAAGCTTGAACCTGAT+AGG	0.509669	5:+33272863	MsaT027011.1:CDS
AAGAGCTTGGTTTGCAACCA+AGG	0.513381	5:+33272902	MsaT027011.1:CDS
AGATCACCTTGAAAAGAAGC+AGG	0.525676	5:-33272250	None:intergenic
TGTGAACCCAAAGAGATTCA+AGG	0.525903	5:-33272225	None:intergenic
ACCATCAACAAGGAAAGAAA+AGG	0.538035	5:+33272791	MsaT027011.1:CDS
TGTTCCCATCATTGCAATGT+GGG	0.548653	5:-33273712	None:intergenic
TCATAACAACAAAGATCCAA+TGG	0.563990	5:+33273571	MsaT027011.1:CDS
GGATTCAGGTTCAAATTCAG+TGG	0.566281	5:+33272660	MsaT027011.1:intron
TCAAGGGCTTCAGAAGTACA+AGG	0.569376	5:-33272208	None:intergenic
CTATATGGTTCCAAAACAGA+AGG	0.583686	5:+33272932	MsaT027011.1:CDS
ATAGCCCACATTGCAATGAT+GGG	0.583931	5:+33273708	MsaT027011.1:CDS
GTGAACCCAAAGAGATTCAA+GGG	0.591669	5:-33272224	None:intergenic
CTTGAGAAAGAAGAGAATTG+TGG	0.599550	5:+33272745	MsaT027011.1:CDS
GATCACCTTGAAAAGAAGCA+GGG	0.602083	5:-33272249	None:intergenic
AAAGCATGTGAAGAATCTGT+AGG	0.619583	5:-33273755	None:intergenic
ATCAACAAGGAAAGAAAAGG+AGG	0.621166	5:+33272794	MsaT027011.1:CDS
TTGTTCCCATCATTGCAATG+TGG	0.645404	5:-33273713	None:intergenic
ATCACCTTGAAAAGAAGCAG+GGG	0.648333	5:-33272248	None:intergenic
GGTTCCAAAACAGAAGGGCA+AGG	0.651221	5:+33272938	MsaT027011.1:CDS
TATATGGTTCCAAAACAGAA+GGG	0.680215	5:+33272933	MsaT027011.1:CDS
AAAAGGTTTGATCTTCAACA+GGG	0.685076	5:-33273919	None:intergenic
GAAGCATGCTACCATCAACA+AGG	0.695864	5:+33272781	MsaT027011.1:CDS
CAAGGGCTTCAGAAGTACAA+GGG	0.720149	5:-33272207	None:intergenic
TGGTGGTGGAAGCAACAGAG+TGG	0.722441	5:+33272696	MsaT027011.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	33272178	33273958	33272178	ID=MsaG027011
Chr5	mRNA	33272178	33273958	33272178	ID=MsaT027011.1;Parent=MsaG027011
Chr5	exon	33272178	33272265	33272178	ID=MsaT027011.1.exon1;Parent=MsaT027011.1
Chr5	CDS	33272178	33272265	33272178	ID=cds.MsaT027011.1;Parent=MsaT027011.1
Chr5	exon	33272668	33273071	33272668	ID=MsaT027011.1.exon2;Parent=MsaT027011.1
Chr5	CDS	33272668	33273071	33272668	ID=cds.MsaT027011.1;Parent=MsaT027011.1
Chr5	exon	33273482	33273958	33273482	ID=MsaT027011.1.exon3;Parent=MsaT027011.1
Chr5	CDS	33273482	33273958	33273482	ID=cds.MsaT027011.1;Parent=MsaT027011.1

Gene Sequence

>MsaT027011.1

ATGTCACTTTTGCTTCAAAATGAAAGACTCCCTTGTACTTCTGAAGCCCTTGAATCTCTTTGGGTTCACACCCCTGCTTCTTTTCAAGGTTCAAATTCAGTGGTTAATTTTGAGAATGGTGGTGGAAGCAACAGAGTGGTAACAGATAGACCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGAAGATTATGAAGCATGCTACCATCAACAAGGAAAGAAAAGGAGGCTTTCAAGTGAACAAGTTCAATTTCTTGAAAAGAGTTTTGAGGTAGAAAACAAGCTTGAACCTGATAGGAAAGTTCAACTTGCAAAAGAGCTTGGTTTGCAACCAAGGCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTTCAAAACTAAACAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGCTTTGATAGTCTCAAAGATGATTATGATAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAAATTGATCCCAAGAGATATAGAGAAAGAGAATTCAGATGACAAATCATCACCAGAAGCAATCAATTCACCTCATAACAACAAAGATCCAATGGATATAATCTCAATTGCAAATTCAGAAAATGGGTCCAAAGTGTCACTCCATAATATGGTACTAAAATGTAAGCAAGAAGATGCCAACTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGGGAACAATCTTTCTTCTTTCATAGAGCCTACAGATTCTTCACATGCTTTTGAACCTGATCATTCAGATTTCTCACAAGATGAAGAAGATAATGATAACTTGAGTCATAATCTTTTGACTCTTCCTTGCTTACCAAAAGTTGAAGATGTTTGCTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCTGTTGAAGATCAAACCTTTTGTTTCTGGCCTTATTGA

Protein sequence

>MsaT027011.1

MSLLLQNERLPCTSEALESLWVHTPASFQGSNSVVNFENGGGSNRVVTDRPFFQQLEKEENCGDEDYEACYHQQGKKRRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDSLKDDYDNLLQENDKLKEEVNSLKNKLIPRDIEKENSDDKSSPEAINSPHNNKDPMDIISIANSENGSKVSLHNMVLKCKQEDANSAKSDVLDSDSPHCNDGNNLSSFIEPTDSSHAFEPDHSDFSQDEEDNDNLSHNLLTLPCLPKVEDVCYDDPHENSCNFGFPVEDQTFCFWPY*