AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027160 MtrunA17_Chr5g0418781 89.928 278 26 1 1 276 1 278 6.28e-177 488
MsaG027160 MtrunA17_Chr1g0194481 46.073 191 84 3 96 268 132 321 2.20e-45 155
MsaG027160 MtrunA17_Chr7g0270191 46.995 183 77 5 96 268 119 291 1.07e-41 145
MsaG027160 MtrunA17_Chr5g0443131 83.333 72 12 0 108 179 143 214 5.77e-40 140
MsaG027160 MtrunA17_Chr4g0051881 50.276 181 71 5 108 275 164 338 7.55e-40 141
MsaG027160 MtrunA17_Chr2g0294231 82.192 73 13 0 106 178 187 259 3.35e-38 138
MsaG027160 MtrunA17_Chr8g0335811 66.265 83 28 0 96 178 128 210 3.12e-33 121
MsaG027160 MtrunA17_Chr3g0129361 68.919 74 23 0 105 178 127 200 4.72e-32 117
MsaG027160 MtrunA17_Chr4g0068541 60.417 96 35 1 106 198 192 287 1.01e-31 121
MsaG027160 MtrunA17_Chr8g0383351 68.000 75 23 1 105 178 142 216 2.35e-30 114
MsaG027160 MtrunA17_Chr7g0224801 66.667 69 23 0 110 178 81 149 9.61e-29 107
MsaG027160 MtrunA17_Chr7g0218081 47.154 123 54 3 91 213 384 495 2.52e-27 110
MsaG027160 MtrunA17_Chr7g0218081 46.067 89 32 2 105 178 196 283 6.19e-17 80.5
MsaG027160 MtrunA17_Chr7g0248721 63.636 77 27 1 102 178 121 196 2.88e-27 105
MsaG027160 MtrunA17_Chr5g0445311 55.208 96 39 2 103 195 345 439 5.02e-27 109
MsaG027160 MtrunA17_Chr5g0445311 62.500 56 20 1 123 178 201 255 2.03e-15 75.9
MsaG027160 MtrunA17_Chr3g0101131 63.158 76 28 0 103 178 396 471 7.49e-27 109
MsaG027160 MtrunA17_Chr3g0101131 59.649 57 22 1 122 178 243 298 3.29e-15 75.5
MsaG027160 MtrunA17_Chr3g0079691 63.158 76 28 0 103 178 476 551 9.35e-27 109
MsaG027160 MtrunA17_Chr3g0079691 38.400 125 69 3 59 178 214 335 5.26e-18 83.6
MsaG027160 MtrunA17_Chr1g0150801 57.143 84 36 0 95 178 75 158 1.87e-26 101
MsaG027160 MtrunA17_Chr8g0386241 51.220 82 40 0 97 178 78 159 4.25e-26 101
MsaG027160 MtrunA17_Chr5g0418191 57.895 76 32 0 103 178 301 376 1.07e-25 105
MsaG027160 MtrunA17_Chr5g0418191 59.649 57 22 1 122 178 151 206 1.49e-15 76.3
MsaG027160 MtrunA17_Chr3g0106491 57.692 78 33 0 101 178 344 421 1.81e-25 105
MsaG027160 MtrunA17_Chr3g0106491 47.222 72 33 2 107 178 187 253 6.12e-13 68.6
MsaG027160 MtrunA17_Chr3g0129321 54.795 73 33 0 108 180 104 176 2.96e-25 99.8
MsaG027160 MtrunA17_Chr4g0042831 56.579 76 33 0 103 178 259 334 1.27e-24 101
MsaG027160 MtrunA17_Chr4g0042831 37.615 109 59 3 93 199 118 219 2.42e-16 78.2
MsaG027160 MtrunA17_Chr4g0004911 55.696 79 35 0 100 178 314 392 6.65e-24 100
MsaG027160 MtrunA17_Chr4g0004911 59.649 57 23 0 122 178 184 240 1.27e-16 79.3
MsaG027160 MtrunA17_Chr5g0432161 53.659 82 38 0 97 178 396 477 1.09e-23 100
MsaG027160 MtrunA17_Chr5g0432161 57.895 57 23 1 122 178 244 299 3.30e-13 69.3
MsaG027160 MtrunA17_Chr7g0249311 53.947 76 35 0 103 178 373 448 1.60e-23 99.8
MsaG027160 MtrunA17_Chr7g0249311 43.860 114 57 3 66 178 127 234 1.39e-18 85.5
MsaG027160 MtrunA17_Chr7g0238921 39.873 158 78 4 122 270 124 273 1.98e-23 97.4
MsaG027160 MtrunA17_Chr8g0383251 42.727 110 63 0 69 178 55 164 3.15e-23 93.6
MsaG027160 MtrunA17_Chr7g0249301 53.247 77 36 0 102 178 272 348 4.64e-23 97.1
MsaG027160 MtrunA17_Chr7g0249301 40.000 130 65 4 67 189 5 128 9.35e-17 79.3
MsaG027160 MtrunA17_Chr1g0188941 52.055 73 35 0 106 178 35 107 5.53e-22 88.2
MsaG027160 MtrunA17_Chr7g0243891 53.947 76 35 0 103 178 355 430 7.84e-22 94.7
MsaG027160 MtrunA17_Chr7g0243891 59.649 57 22 1 122 178 216 271 9.19e-15 73.9
MsaG027160 MtrunA17_Chr7g0263531 51.351 74 36 0 105 178 344 417 1.05e-20 90.9
MsaG027160 MtrunA17_Chr7g0263531 60.714 56 21 1 123 178 190 244 5.75e-15 74.3
MsaG027160 MtrunA17_Chr5g0447701 58.571 70 29 0 109 178 239 308 2.22e-20 89.7
MsaG027160 MtrunA17_Chr5g0447701 54.386 57 25 1 122 178 92 147 2.78e-12 66.2
MsaG027160 MtrunA17_Chr2g0322391 45.349 86 46 1 94 178 321 406 5.74e-20 89.4
MsaG027160 MtrunA17_Chr2g0288871 38.095 147 67 5 51 178 221 362 1.32e-19 88.2
MsaG027160 MtrunA17_Chr6g0485431 47.436 78 37 2 108 184 140 214 3.08e-19 86.3
MsaG027160 MtrunA17_Chr3g0099641 48.000 75 38 1 105 178 234 308 5.52e-19 86.3
MsaG027160 MtrunA17_Chr4g0075201 49.333 75 37 1 105 178 250 324 1.99e-18 84.7
MsaG027160 MtrunA17_Chr7g0270831 49.333 75 37 1 105 178 199 273 6.86e-18 82.8
MsaG027160 MtrunA17_Chr2g0333851 49.315 73 34 2 109 178 154 226 1.36e-17 81.3
MsaG027160 MtrunA17_Chr4g0074001 48.000 75 39 0 106 180 343 417 1.80e-17 82.0
MsaG027160 MtrunA17_Chr1g0150281 43.023 86 43 3 99 178 112 197 2.42e-17 80.1
MsaG027160 MtrunA17_Chr1g0147881 42.683 82 46 1 98 178 238 319 1.02e-16 79.0
MsaG027160 MtrunA17_Chr1g0189391 45.946 74 39 1 109 181 84 157 1.07e-16 78.6
MsaG027160 MtrunA17_Chr2g0284321 52.308 65 29 2 123 186 36 99 1.18e-16 76.6
MsaG027160 MtrunA17_Chr4g0071521 38.542 96 58 1 97 191 220 315 1.32e-16 78.2
MsaG027160 MtrunA17_Chr5g0401821 44.578 83 45 1 97 178 174 256 1.83e-16 77.4
MsaG027160 MtrunA17_Chr2g0302391 40.000 100 54 3 106 202 195 291 3.69e-16 77.8
MsaG027160 MtrunA17_Chr8g0387501 54.237 59 26 1 121 178 128 186 4.11e-16 76.3
MsaG027160 MtrunA17_Chr4g0060271 38.596 114 61 3 74 178 199 312 4.36e-16 77.8
MsaG027160 MtrunA17_Chr3g0136961 50.000 60 29 1 120 178 136 195 4.45e-16 76.6
MsaG027160 MtrunA17_Chr4g0025061 34.667 150 84 5 33 178 278 417 5.10e-16 77.8
MsaG027160 MtrunA17_Chr4g0051181 47.297 74 38 1 106 178 227 300 7.90e-16 77.0
MsaG027160 MtrunA17_Chr3g0139021 44.578 83 44 2 98 179 291 372 8.19e-16 76.6
MsaG027160 MtrunA17_Chr8g0387981 41.739 115 49 4 79 176 76 189 1.19e-15 75.9
MsaG027160 MtrunA17_Chr8g0347251 34.507 142 79 4 43 176 58 193 1.39e-15 75.9
MsaG027160 MtrunA17_Chr7g0216891 39.316 117 56 3 74 178 163 276 1.45e-15 76.3
MsaG027160 MtrunA17_Chr8g0379461 41.573 89 46 2 96 178 45 133 3.82e-15 73.2
MsaG027160 MtrunA17_Chr8g0348311 54.386 57 25 1 123 178 156 212 3.88e-15 74.3
MsaG027160 MtrunA17_Chr7g0228941 50.820 61 29 1 123 182 53 113 4.49e-15 70.1
MsaG027160 MtrunA17_Chr2g0319961 38.532 109 61 3 83 186 37 144 6.08e-15 72.8
MsaG027160 MtrunA17_Chr7g0275531 50.000 68 30 2 121 184 117 184 8.75e-15 73.2
MsaG027160 MtrunA17_Chr2g0293481 52.632 57 26 1 123 178 268 324 9.11e-15 73.9
MsaG027160 MtrunA17_Chr5g0447711 47.222 72 38 0 107 178 215 286 1.01e-14 72.8
MsaG027160 MtrunA17_Chr4g0025051 34.416 154 84 6 33 178 248 392 1.17e-14 73.6
MsaG027160 MtrunA17_Chr7g0248691 54.386 57 25 1 123 178 155 211 1.85e-14 72.4
MsaG027160 MtrunA17_Chr1g0150271 44.615 65 32 2 121 184 100 161 2.01e-14 71.2
MsaG027160 MtrunA17_Chr3g0126391 54.237 59 24 1 121 176 132 190 2.19e-14 72.0
MsaG027160 MtrunA17_Chr4g0053281 38.947 95 55 2 96 189 242 334 2.79e-14 72.0
MsaG027160 MtrunA17_Chr4g0001361 47.458 59 30 1 121 178 161 219 2.98e-14 71.6
MsaG027160 MtrunA17_Chr1g0184691 50.000 60 29 1 123 181 294 353 6.56e-14 70.9
MsaG027160 MtrunA17_Chr7g0270051 52.632 57 26 1 123 178 54 110 8.84e-14 69.7
MsaG027160 MtrunA17_Chr7g0244981 51.724 58 25 1 122 176 122 179 1.76e-13 68.9
MsaG027160 MtrunA17_Chr7g0244971 30.769 182 109 6 16 193 26 194 3.03e-13 68.6
MsaG027160 MtrunA17_Chr1g0202461 52.632 57 26 1 123 178 262 318 4.38e-13 68.6
MsaG027160 MtrunA17_Chr2g0315381 38.043 92 48 3 121 204 143 233 2.00e-12 66.2
MsaG027160 MtrunA17_Chr5g0428351 31.690 142 72 7 95 219 154 287 2.04e-12 66.2
MsaG027160 MtrunA17_Chr2g0315361 40.506 79 41 2 121 196 147 222 1.22e-11 63.9
MsaG027160 MtrunA17_Chr2g0289181 48.276 58 29 1 122 178 14 71 2.18e-11 62.4
MsaG027160 MtrunA17_Chr8g0334541 46.552 58 28 1 122 176 103 160 2.58e-11 62.8
MsaG027160 MtrunA17_Chr3g0128671 37.209 86 50 2 123 204 128 213 2.91e-11 62.8
MsaG027160 MtrunA17_Chr4g0024391 40.000 70 41 1 105 173 212 281 3.75e-11 63.2
MsaG027160 MtrunA17_Chr8g0350621 40.299 67 36 2 122 184 111 177 3.81e-11 62.0
MsaG027160 MtrunA17_Chr5g0432071 49.123 57 28 1 122 178 104 159 4.66e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027160 AT1G69310.4 57.692 208 75 4 66 270 89 286 8.63e-69 215
MsaG027160 AT1G69310.2 57.692 208 75 4 66 270 89 286 8.63e-69 215
MsaG027160 AT1G69310.1 57.692 208 75 4 66 270 89 286 8.63e-69 215
MsaG027160 AT1G69310.3 55.769 208 75 5 66 270 89 282 4.62e-63 200
MsaG027160 AT4G18170.1 78.313 83 18 0 96 178 146 228 5.03e-41 144
MsaG027160 AT2G47260.1 78.313 83 18 0 96 178 148 230 7.04e-41 144
MsaG027160 AT1G29860.1 80.822 73 14 0 106 178 120 192 1.24e-37 134
MsaG027160 AT5G46350.1 81.690 71 13 0 108 178 169 239 3.01e-37 134
MsaG027160 AT5G49520.1 43.094 181 86 4 106 269 205 385 2.31e-35 131
MsaG027160 AT4G39410.1 54.054 111 46 1 98 208 199 304 3.56e-34 125
MsaG027160 AT2G44745.1 66.265 83 28 0 96 178 119 201 1.54e-33 122
MsaG027160 AT3G62340.1 64.634 82 27 1 97 178 95 174 2.29e-31 117
MsaG027160 AT2G46130.1 63.158 76 28 0 103 178 11 86 1.47e-29 108
MsaG027160 AT1G64000.1 58.537 82 34 0 97 178 89 170 4.72e-29 109
MsaG027160 AT5G41570.1 58.065 93 35 2 90 178 62 154 8.33e-29 108
MsaG027160 AT5G13080.1 67.143 70 23 0 109 178 54 123 9.44e-29 107
MsaG027160 AT3G01970.1 64.286 70 25 0 109 178 52 121 3.96e-27 103
MsaG027160 AT5G26170.1 60.274 73 29 0 109 181 100 172 1.85e-26 102
MsaG027160 AT5G07100.2 45.600 125 63 3 69 189 84 207 2.81e-26 102
MsaG027160 AT5G07100.2 42.500 80 42 1 122 197 24 103 3.04e-12 65.1
MsaG027160 AT5G07100.4 45.600 125 63 3 69 189 84 207 2.81e-26 102
MsaG027160 AT5G07100.4 42.500 80 42 1 122 197 24 103 3.04e-12 65.1
MsaG027160 AT5G07100.5 45.600 125 63 3 69 189 84 207 2.81e-26 102
MsaG027160 AT5G07100.5 42.500 80 42 1 122 197 24 103 3.04e-12 65.1
MsaG027160 AT5G07100.3 45.600 125 63 3 69 189 84 207 2.81e-26 102
MsaG027160 AT5G07100.3 42.500 80 42 1 122 197 24 103 3.04e-12 65.1
MsaG027160 AT5G07100.1 52.222 90 42 1 100 189 212 300 7.03e-26 103
MsaG027160 AT5G07100.1 50.877 57 28 0 122 178 117 173 2.29e-12 66.6
MsaG027160 AT1G13960.2 59.459 74 30 0 105 178 239 312 1.51e-25 103
MsaG027160 AT1G13960.2 63.158 57 20 1 122 178 76 131 1.13e-16 79.3
MsaG027160 AT1G13960.1 57.895 76 32 0 103 178 390 465 1.76e-25 105
MsaG027160 AT1G13960.1 63.158 57 20 1 122 178 229 284 5.98e-17 80.9
MsaG027160 AT4G26640.5 61.842 76 29 0 103 178 186 261 1.88e-25 104
MsaG027160 AT4G26640.5 61.404 57 21 1 122 178 35 90 2.40e-15 75.5
MsaG027160 AT4G26640.6 61.842 76 29 0 103 178 186 261 1.88e-25 104
MsaG027160 AT4G26640.6 61.404 57 21 1 122 178 35 90 2.40e-15 75.5
MsaG027160 AT4G26640.4 61.842 76 29 0 103 178 186 261 1.88e-25 104
MsaG027160 AT4G26640.4 61.404 57 21 1 122 178 35 90 2.40e-15 75.5
MsaG027160 AT4G26640.3 61.842 76 29 0 103 178 186 261 1.88e-25 104
MsaG027160 AT4G26640.3 61.404 57 21 1 122 178 35 90 2.40e-15 75.5
MsaG027160 AT4G26640.7 61.842 76 29 0 103 178 322 397 3.50e-25 104
MsaG027160 AT4G26640.7 61.404 57 21 1 122 178 171 226 2.50e-15 75.9
MsaG027160 AT4G26640.1 61.842 76 29 0 103 178 290 365 3.82e-25 104
MsaG027160 AT4G26640.1 61.404 57 21 1 122 178 139 194 2.75e-15 75.9
MsaG027160 AT4G26640.2 61.842 76 29 0 103 178 362 437 3.98e-25 104
MsaG027160 AT4G26640.2 61.404 57 21 1 122 178 211 266 2.42e-15 76.3
MsaG027160 AT2G03340.1 57.895 76 32 0 103 178 396 471 5.01e-25 104
MsaG027160 AT2G03340.1 61.404 57 21 1 122 178 250 305 5.88e-16 77.8
MsaG027160 AT3G01080.2 58.442 77 32 0 102 178 324 400 9.95e-25 103
MsaG027160 AT3G01080.2 57.895 57 23 1 122 178 205 260 4.75e-15 75.1
MsaG027160 AT3G01080.1 58.442 77 32 0 102 178 286 362 1.37e-24 102
MsaG027160 AT3G01080.1 57.895 57 23 1 122 178 167 222 6.20e-15 74.7
MsaG027160 AT5G64810.1 39.706 136 70 2 50 181 42 169 1.53e-24 97.8
MsaG027160 AT5G56270.1 60.526 76 30 0 103 178 468 543 2.14e-24 102
MsaG027160 AT5G56270.1 63.158 57 20 1 122 178 273 328 1.72e-16 79.7
MsaG027160 AT2G46130.2 57.895 76 28 1 103 178 11 82 4.09e-24 94.0
MsaG027160 AT2G38470.1 57.895 76 32 0 103 178 343 418 1.18e-23 100
MsaG027160 AT2G38470.1 59.649 57 22 1 122 178 184 239 1.62e-13 70.5
MsaG027160 AT2G37260.3 48.421 95 47 1 92 184 237 331 2.32e-23 97.8
MsaG027160 AT2G37260.3 53.333 75 32 2 123 195 86 159 6.39e-15 74.3
MsaG027160 AT2G37260.2 48.421 95 47 1 92 184 235 329 2.56e-23 97.8
MsaG027160 AT2G37260.2 53.333 75 32 2 123 195 84 157 7.29e-15 73.9
MsaG027160 AT2G37260.1 48.421 95 47 1 92 184 317 411 4.04e-23 98.2
MsaG027160 AT2G37260.1 53.333 75 32 2 123 195 166 239 6.99e-15 74.3
MsaG027160 AT2G30250.1 56.579 76 33 0 103 178 309 384 1.21e-22 96.7
MsaG027160 AT4G26440.1 57.534 73 31 0 106 178 356 428 2.31e-22 96.7
MsaG027160 AT4G26440.1 41.176 136 57 6 122 242 178 305 7.68e-16 77.8
MsaG027160 AT2G04880.2 47.253 91 45 1 109 199 270 357 7.28e-22 95.1
MsaG027160 AT2G04880.2 56.897 58 24 1 121 178 110 166 3.56e-14 72.4
MsaG027160 AT2G04880.1 47.253 91 45 1 109 199 294 381 1.03e-21 94.7
MsaG027160 AT2G04880.1 56.897 58 24 1 121 178 110 166 4.09e-14 72.4
MsaG027160 AT5G43290.1 31.818 176 94 4 109 270 100 263 1.07e-20 89.4
MsaG027160 AT2G21900.1 44.565 92 46 2 92 178 74 165 2.46e-20 86.7
MsaG027160 AT1G55600.1 52.857 70 33 0 109 178 294 363 1.87e-19 88.2
MsaG027160 AT4G04450.2 52.000 75 35 1 105 178 181 255 5.64e-19 86.7
MsaG027160 AT4G04450.1 52.000 75 35 1 105 178 275 349 1.32e-18 85.9
MsaG027160 AT1G62300.1 39.344 122 69 3 59 178 251 369 3.64e-18 84.3
MsaG027160 AT4G22070.4 49.333 75 37 1 105 178 280 354 5.89e-18 84.0
MsaG027160 AT4G22070.3 49.333 75 37 1 105 178 280 354 5.89e-18 84.0
MsaG027160 AT4G22070.2 49.333 75 37 1 105 178 280 354 5.89e-18 84.0
MsaG027160 AT4G22070.1 49.333 75 37 1 105 178 280 354 5.89e-18 84.0
MsaG027160 AT2G25000.2 54.237 59 26 1 121 178 102 160 3.67e-17 79.0
MsaG027160 AT2G25000.4 54.237 59 26 1 121 178 102 160 3.67e-17 79.0
MsaG027160 AT2G25000.3 54.237 59 26 1 121 178 124 182 5.30e-17 79.0
MsaG027160 AT2G25000.1 54.237 59 26 1 121 178 145 203 7.16e-17 79.0
MsaG027160 AT4G31800.2 50.847 59 28 1 121 178 110 168 1.88e-16 77.0
MsaG027160 AT1G18860.1 44.872 78 42 1 102 178 219 296 2.40e-16 79.0
MsaG027160 AT5G15130.2 43.590 78 43 1 102 178 165 242 2.89e-16 79.0
MsaG027160 AT5G15130.1 43.590 78 43 1 102 178 207 284 2.90e-16 79.0
MsaG027160 AT1G68150.1 48.649 74 37 1 106 178 219 292 2.93e-16 78.2
MsaG027160 AT4G31800.1 50.847 59 28 1 121 178 175 233 3.00e-16 77.8
MsaG027160 AT4G01720.1 48.649 74 37 1 106 178 223 296 3.29e-16 78.6
MsaG027160 AT4G30935.1 40.206 97 57 1 106 202 315 410 3.60e-16 78.6
MsaG027160 AT5G52830.1 45.000 80 43 1 100 178 143 222 3.83e-16 77.8
MsaG027160 AT1G29280.1 40.000 90 49 2 94 178 42 131 7.76e-16 75.9
MsaG027160 AT1G80840.1 49.153 59 29 1 121 178 145 203 1.35e-15 75.5
MsaG027160 AT3G01080.3 57.895 57 23 1 122 178 205 260 1.69e-15 75.5
MsaG027160 AT2G30590.1 42.169 83 47 1 97 178 288 370 3.14e-15 75.5
MsaG027160 AT1G30650.1 41.860 86 47 2 96 178 189 274 3.40e-15 75.5
MsaG027160 AT4G31550.2 42.169 83 47 1 98 179 221 303 4.34e-15 74.3
MsaG027160 AT3G58710.1 41.837 98 49 3 94 186 39 133 7.43e-15 73.2
MsaG027160 AT2G24570.1 44.828 87 43 3 95 179 218 301 7.72e-15 73.6
MsaG027160 AT2G46400.1 31.933 119 78 1 71 186 53 171 1.02e-14 73.2
MsaG027160 AT4G31550.1 44.186 86 43 3 96 179 222 304 1.05e-14 73.2
MsaG027160 AT2G34830.1 52.632 57 26 1 123 178 216 272 1.21e-14 73.9
MsaG027160 AT2G34830.2 52.632 57 26 1 123 178 225 281 1.44e-14 73.6
MsaG027160 AT4G01250.1 39.326 89 50 3 91 178 100 185 1.44e-14 72.8
MsaG027160 AT2G23320.1 43.373 83 46 1 97 178 215 297 2.29e-14 72.4
MsaG027160 AT4G24240.1 40.698 86 50 1 97 181 256 341 4.95e-14 71.6
MsaG027160 AT1G69810.2 29.518 166 91 5 19 178 58 203 6.71e-14 71.2
MsaG027160 AT4G23550.1 48.438 64 32 1 117 179 135 198 7.88e-14 70.9
MsaG027160 AT5G45050.4 54.386 57 25 1 123 178 1042 1098 8.79e-14 71.6
MsaG027160 AT5G45050.1 54.386 57 25 1 123 178 1181 1237 9.37e-14 71.6
MsaG027160 AT5G45050.2 54.386 57 25 1 123 178 1153 1209 1.01e-13 71.6
MsaG027160 AT1G69810.1 29.518 166 91 5 19 178 116 261 1.16e-13 70.9
MsaG027160 AT3G58710.2 38.596 114 61 4 79 186 22 132 1.31e-13 69.7
MsaG027160 AT5G28650.1 38.614 101 54 2 97 196 237 330 2.08e-13 69.7
MsaG027160 AT1G66600.1 36.842 133 68 4 53 182 47 166 3.11e-13 68.2
MsaG027160 AT1G66560.1 45.312 64 32 1 122 182 103 166 7.01e-13 67.4
MsaG027160 AT2G40740.1 47.619 63 29 2 122 180 173 235 9.31e-13 67.4
MsaG027160 AT3G04670.1 37.624 101 55 2 97 196 237 330 1.02e-12 67.8
MsaG027160 AT2G40740.3 47.619 63 29 2 122 180 182 244 1.21e-12 67.0
MsaG027160 AT4G11070.2 47.761 67 31 2 122 184 109 175 1.85e-12 66.6
MsaG027160 AT4G12020.11 42.353 85 44 2 59 142 581 661 1.99e-12 67.8
MsaG027160 AT4G12020.10 42.353 85 44 2 59 142 581 661 2.20e-12 67.8
MsaG027160 AT4G12020.10 49.153 59 29 1 120 178 466 523 6.44e-11 63.2
MsaG027160 AT4G12020.3 42.353 85 44 2 59 142 581 661 2.20e-12 67.8
MsaG027160 AT4G12020.3 49.153 59 29 1 120 178 466 523 6.62e-11 63.2
MsaG027160 AT4G12020.6 42.353 85 44 2 59 142 581 661 2.27e-12 67.8
MsaG027160 AT4G12020.6 49.153 59 29 1 120 178 466 523 7.14e-11 63.2
MsaG027160 AT4G12020.8 42.353 85 44 2 59 142 581 661 2.27e-12 67.8
MsaG027160 AT4G12020.8 49.153 59 29 1 120 178 466 523 7.14e-11 63.2
MsaG027160 AT3G56400.1 41.333 75 40 2 121 191 119 193 2.28e-12 66.2
MsaG027160 AT4G12020.5 42.353 85 44 2 59 142 514 594 2.32e-12 67.8
MsaG027160 AT4G12020.5 49.153 59 29 1 120 178 399 456 7.10e-11 63.2
MsaG027160 AT4G12020.2 42.353 85 44 2 59 142 581 661 2.39e-12 67.4
MsaG027160 AT4G12020.2 49.153 59 29 1 120 178 466 523 6.94e-11 63.2
MsaG027160 AT4G11070.1 47.761 67 31 2 122 184 141 207 2.40e-12 66.2
MsaG027160 AT4G12020.7 42.353 85 44 2 59 142 581 661 2.40e-12 67.4
MsaG027160 AT4G12020.7 49.153 59 29 1 120 178 466 523 6.83e-11 63.2
MsaG027160 AT4G12020.4 42.353 85 44 2 59 142 581 661 2.48e-12 67.4
MsaG027160 AT4G12020.4 49.153 59 29 1 120 178 466 523 6.68e-11 63.2
MsaG027160 AT4G12020.1 42.353 85 44 2 59 142 581 661 2.56e-12 67.4
MsaG027160 AT4G12020.1 49.153 59 29 1 120 178 466 523 7.16e-11 63.2
MsaG027160 AT4G12020.9 42.353 85 44 2 59 142 581 661 2.56e-12 67.4
MsaG027160 AT4G12020.9 49.153 59 29 1 120 178 466 523 7.16e-11 63.2
MsaG027160 AT5G01900.1 49.123 57 26 1 123 176 111 167 3.97e-12 65.5
MsaG027160 AT5G24110.1 41.414 99 51 4 82 176 75 170 6.44e-12 65.1
MsaG027160 AT1G66550.2 49.123 57 26 1 123 176 104 160 8.19e-12 64.3
MsaG027160 AT1G66550.1 49.123 57 26 1 123 176 109 165 9.15e-12 64.3
MsaG027160 AT4G23810.1 45.312 64 31 2 122 181 158 221 4.63e-11 62.8
MsaG027160 AT2G40750.1 46.552 58 28 1 122 176 152 209 8.19e-11 62.0

Find 83 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTAACTCACGGTATTTC+CGG 0.250309 5:+36144242 None:intergenic
TGGCGTCAGCGTCGTCTTAC+AGG 0.280133 5:-36144340 MsaT027160.1:CDS
AGTTTGTCGTGGGTGGTTTC+CGG 0.328363 5:+36144401 None:intergenic
TACCCCGTGGAATGCGCAAC+AGG 0.355074 5:-36134127 MsaT027160.1:CDS
TATGTAGTTATAACAATTGT+TGG 0.364884 5:+36134425 None:intergenic
AACTCTGCAGGTAATTGAAC+AGG 0.390496 5:+36134293 None:intergenic
CATCCCTGTTGCGCATTCCA+CGG 0.391032 5:+36134123 None:intergenic
GGCTACAGATGGAGGAAGTA+TGG 0.393103 5:-36135292 MsaT027160.1:CDS
AGTTCGTCGGCAGCTCAAAC+TGG 0.401902 5:-36144481 MsaT027160.1:CDS
ATCCCTGTTGCGCATTCCAC+GGG 0.402445 5:+36134124 None:intergenic
TTGCACCACCACTGTTTCTC+AGG 0.407420 5:-36134264 MsaT027160.1:CDS
TCAATTGAACCTGTTTGAAC+AGG 0.413664 5:+36144371 None:intergenic
CTAGCCGATGAAGGACTACT+TGG 0.427250 5:-36134158 MsaT027160.1:CDS
GTAAATGCACGGTGAAGAAA+AGG 0.427885 5:-36134469 MsaT027160.1:CDS
CTTGTTGCAGGAGCTACTAT+AGG 0.437423 5:-36134502 MsaT027160.1:intron
ATCGAGCAGCGCTACAATGC+CGG 0.445819 5:-36134204 MsaT027160.1:CDS
CTGTTACAACCTGTTCAAAC+AGG 0.446008 5:-36144380 MsaT027160.1:CDS
GGCTGATGCATCACCGCCGC+TGG 0.448875 5:-36134183 MsaT027160.1:CDS
TAATAGAATTGAGGCATTGT+AGG 0.457087 5:+36134317 None:intergenic
AGAAGGGGCAAAAGCGAATA+CGG 0.458868 5:-36135366 MsaT027160.1:CDS
CGGCGGTTTCCCATCGGAGA+CGG 0.460716 5:+36144262 None:intergenic
TGAGCTGCCGACGAACTCTT+CGG 0.462792 5:+36144487 None:intergenic
TAGGAACAAAAGTAAGAAGA+AGG 0.476897 5:-36135383 MsaT027160.1:CDS
GAGGCATTGTAGGAGCAAAC+TGG 0.488963 5:+36134327 None:intergenic
ATGTAGTTATAACAATTGTT+GGG 0.492053 5:+36134426 None:intergenic
GTGCAAGTGTTTAACTCTGC+AGG 0.495119 5:+36134281 None:intergenic
GGGATGAGAGAAATATTTGA+TGG 0.502837 5:-36134106 None:intergenic
AAGCTCTAGCGAGGATCTGC+CGG 0.506191 5:-36144294 MsaT027160.1:CDS
ATAGGTTCGACCACATCGGC+TGG 0.509291 5:-36144433 MsaT027160.1:CDS
TGACTAATGATTCCACTTCG+AGG 0.515148 5:+36134368 None:intergenic
AAGATGATCAACTTCACTCT+TGG 0.519601 5:+36135321 None:intergenic
ATTGTTATAACTACATATGA+AGG 0.523487 5:-36134419 MsaT027160.1:CDS
CCGCTGGATCTAGCCGATGA+AGG 0.527848 5:-36134167 MsaT027160.1:CDS
TCGGAGACGGTGGATTTCTC+CGG 0.531591 5:+36144275 None:intergenic
GAGAAATCCACCGTCTCCGA+TGG 0.531779 5:-36144272 MsaT027160.1:CDS
TTGTAACAGTTTGTCGTGGG+TGG 0.543814 5:+36144394 None:intergenic
ATGGAGGAAGTATGGTCAGA+AGG 0.553401 5:-36135284 MsaT027160.1:CDS
AATCATCCTCATGAGGCCGC+TGG 0.553836 5:-36134230 MsaT027160.1:CDS
GATCCTCCAGCGGCCTCATG+AGG 0.556070 5:+36134224 None:intergenic
ATCTCCAAGTAGTCCTTCAT+CGG 0.564084 5:+36134154 None:intergenic
TGAACAGGATAATAGAATTG+AGG 0.567757 5:+36134308 None:intergenic
CAACATTGTCATCACACAGT+TGG 0.575164 5:-36134395 MsaT027160.1:CDS
AGGAACAAAAGTAAGAAGAA+GGG 0.576712 5:-36135382 MsaT027160.1:CDS
GATGTGGTCGAACCTATCGC+TGG 0.578566 5:+36144439 None:intergenic
ACAGTTGGATTTCCTCGAAG+TGG 0.579381 5:-36134380 MsaT027160.1:CDS
AGCGGCGGTGATGCATCAGC+CGG 0.584373 5:+36134185 None:intergenic
TATTTCCGGCGGTTTCCCAT+CGG 0.584868 5:+36144256 None:intergenic
TAAATGCACGGTGAAGAAAA+GGG 0.590194 5:-36134468 MsaT027160.1:CDS
GGAACAAAAGTAAGAAGAAG+GGG 0.592127 5:-36135381 MsaT027160.1:CDS
CATCGGCTGGAATCTTGTAC+CGG 0.594865 5:-36144420 MsaT027160.1:CDS
ATCTTGAGGATGGCTACAGA+TGG 0.596823 5:-36135303 MsaT027160.1:CDS
CGGTTTCCCATCGGAGACGG+TGG 0.599523 5:+36144265 None:intergenic
GAAGTTGATCATCTTGAGGA+TGG 0.599686 5:-36135313 MsaT027160.1:CDS
TTGAGGATGGCTACAGATGG+AGG 0.606728 5:-36135300 MsaT027160.1:CDS
CGTCTCCGATGGGAAACCGC+CGG 0.609437 5:-36144261 MsaT027160.1:CDS
AGAAATCCACCGTCTCCGAT+GGG 0.611798 5:-36144271 MsaT027160.1:CDS
CTGCCGACGAACTCTTCGGT+AGG 0.613223 5:+36144491 None:intergenic
ACGTTGATGATTCCAGCGAT+AGG 0.613832 5:-36144451 MsaT027160.1:CDS
ACTTTCTTCAAGCTCTAGCG+AGG 0.615256 5:-36144303 MsaT027160.1:CDS
CAGGTTGTAACAGTTTGTCG+TGG 0.615573 5:+36144390 None:intergenic
GAGTGAAGTTGATCATCTTG+AGG 0.617670 5:-36135317 MsaT027160.1:CDS
AGGTTGTAACAGTTTGTCGT+GGG 0.617894 5:+36144391 None:intergenic
CATCCTCATGAGGCCGCTGG+AGG 0.629985 5:-36134227 MsaT027160.1:CDS
ACCCCGTGGAATGCGCAACA+GGG 0.634896 5:-36134126 MsaT027160.1:CDS
AGGTTCAATTGAAACCGCGT+TGG 0.644816 5:-36144360 MsaT027160.1:CDS
GTACAAGATTCCAGCCGATG+TGG 0.646288 5:+36144423 None:intergenic
AAGGGTTGAACGTTCTCATG+AGG 0.649580 5:-36134450 MsaT027160.1:CDS
GTGCACAAATAGTAAATGCA+CGG 0.652957 5:-36134480 MsaT027160.1:CDS
TCAAACAAATCATCCTCATG+AGG 0.654573 5:-36134237 MsaT027160.1:CDS
CCTTCATCGGCTAGATCCAG+CGG 0.667147 5:+36134167 None:intergenic
AAAAGCGAATACGGCAACCA+CGG 0.672921 5:-36135357 MsaT027160.1:CDS
AGCGATAGGTTCGACCACAT+CGG 0.679999 5:-36144437 MsaT027160.1:CDS
TTAACTCACGGTATTTCCGG+CGG 0.681679 5:+36144245 None:intergenic
AGCGCTGCTCGATCCTCCAG+CGG 0.686245 5:+36134214 None:intergenic
GCACCTACCGAAGAGTTCGT+CGG 0.692153 5:-36144494 MsaT027160.1:CDS
CTTGGAGATATTGTACCCCG+TGG 0.693708 5:-36134140 MsaT027160.1:CDS
TCCCTGTTGCGCATTCCACG+GGG 0.706727 5:+36134125 None:intergenic
TCATCGGCTAGATCCAGCGG+CGG 0.712483 5:+36134170 None:intergenic
CAACTGTGTGATGACAATGT+TGG 0.715256 5:+36134396 None:intergenic
TTGACATGCCTGAGAAACAG+TGG 0.730165 5:+36134256 None:intergenic
TTGGTCATAAATGCAAACCG+TGG 0.747348 5:+36135340 None:intergenic
AGACGACGCTGACGCCAACG+CGG 0.758116 5:+36144346 None:intergenic
ACATGCCTGAGAAACAGTGG+TGG 0.787622 5:+36134259 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 36134109 36144534 36134109 ID=MsaG027160
Chr5 mRNA 36134109 36144534 36134109 ID=MsaT027160.1;Parent=MsaG027160
Chr5 exon 36134109 36134514 36134109 ID=MsaT027160.1.exon3;Parent=MsaT027160.1
Chr5 CDS 36134109 36134514 36134109 ID=cds.MsaT027160.1;Parent=MsaT027160.1
Chr5 exon 36135259 36135402 36135259 ID=MsaT027160.1.exon2;Parent=MsaT027160.1
Chr5 CDS 36135259 36135402 36135259 ID=cds.MsaT027160.1;Parent=MsaT027160.1
Chr5 exon 36144254 36144534 36144254 ID=MsaT027160.1.exon1;Parent=MsaT027160.1
Chr5 CDS 36144254 36144534 36144254 ID=cds.MsaT027160.1;Parent=MsaT027160.1
Gene Sequence

>MsaT027160.1

ATGGAAGACAAAGACAGAGCACCTACCGAAGAGTTCGTCGGCAGCTCAAACTGGACTCTCAACGTTGATGATTCCAGCGATAGGTTCGACCACATCGGCTGGAATCTTGTACCGGAAACCACCCACGACAAACTGTTACAACCTGTTCAAACAGGTTCAATTGAAACCGCGTTGGCGTCAGCGTCGTCTTACAGGTCAAATAATCAATCACTTTCTTCAAGCTCTAGCGAGGATCTGCCGGAGAAATCCACCGTCTCCGATGGGAAACCGCCGGAAATACCGAACAAAAGTAAGAAGAAGGGGCAAAAGCGAATACGGCAACCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGAGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTTCATTCCCTAGGAGCTACTATAGGTGCACAAATAGTAAATGCACGGTGAAGAAAAGGGTTGAACGTTCTCATGAGGACCCAACAATTGTTATAACTACATATGAAGGCCAACATTGTCATCACACAGTTGGATTTCCTCGAAGTGGAATCATTAGTCATGAATCTTCTTTTACTGGCCAGTTTGCTCCTACAATGCCTCAATTCTATTATCCTGTTCAATTACCTGCAGAGTTAAACACTTGCACCACCACTGTTTCTCAGGCATGTCAAACAAATCATCCTCATGAGGCCGCTGGAGGATCGAGCAGCGCTACAATGCCGGCTGATGCATCACCGCCGCTGGATCTAGCCGATGAAGGACTACTTGGAGATATTGTACCCCGTGGAATGCGCAACAGGGATGAGAGAAATATTTGA
Protein sequence

>MsaT027160.1

MEDKDRAPTEEFVGSSNWTLNVDDSSDRFDHIGWNLVPETTHDKLLQPVQTGSIETALASASSYRSNNQSLSSSSSEDLPEKSTVSDGKPPEIPNKSKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSSFPRSYYRCTNSKCTVKKRVERSHEDPTIVITTYEGQHCHHTVGFPRSGIISHESSFTGQFAPTMPQFYYPVQLPAELNTCTTTVSQACQTNHPHEAAGGSSSATMPADASPPLDLADEGLLGDIVPRGMRNRDERNI*