AlfalfaGEDB | MsaG027206

M. sativa ssp. caerulea / MsaG027206

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027206	XP_039687084.1	84.706	85	13	0	6	90	38	122	1.24e-46	155

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027206	tr\|G7INX6\|G7INX6_MEDTR	84.706	85	13	0	6	90	38	122	5.91e-47	155

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TFs/TRs:

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Gene ID	Type	Classification
MsaG027206	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027206	MtrunA17_Chr2g0281511	84.706	85	13	0	6	90	38	122	1.14e-50	155
MsaG027206	MtrunA17_Chr2g0309121	83.529	85	13	1	6	90	38	121	1.21e-47	147
MsaG027206	MtrunA17_Chr3g0081891	85.714	42	6	0	6	47	38	79	9.17e-21	78.6
MsaG027206	MtrunA17_Chr7g0276661	42.500	80	44	2	9	87	88	166	1.25e-17	72.8
MsaG027206	MtrunA17_Chr7g0228081	30.588	85	59	0	4	88	8	92	4.95e-13	59.3
MsaG027206	MtrunA17_Chr8g0372431	31.250	80	55	0	9	88	23	102	2.28e-12	57.8
MsaG027206	MtrunA17_Chr5g0430431	46.429	56	30	0	29	84	199	254	2.98e-12	60.1
MsaG027206	MtrunA17_Chr0c01g0489371	41.333	75	42	1	6	78	240	314	5.12e-12	59.7
MsaG027206	MtrunA17_Chr8g0356961	40.000	75	43	1	6	78	91	165	1.51e-11	57.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGGTAGCATACATCCTATT+AGG	0.440754	5:-37406999	None:intergenic
AGAAATACATAGGGAGAGGA+TGG	0.573439	5:+37406910	MsaT027206.1:CDS
AGCATGGATCAGAAATACAT+AGG	0.564126	5:+37406900	MsaT027206.1:CDS
ATTGGTATACAAACCATTCT+CGG	0.470714	5:-37406805	None:intergenic
CCATTCTCGGCAACACGTCG+AGG	0.599354	5:-37406792	None:intergenic
CCTCGACGTGTTGCCGAGAA+TGG	0.307864	5:+37406792	MsaT027206.1:CDS
CGGTCAATAATCCTCCTAAT+AGG	0.355854	5:+37406985	MsaT027206.1:CDS
CTTGAAAAGTGCCTAAAAGT+TGG	0.570138	5:+37406945	MsaT027206.1:CDS
GATCAGAAATACATAGGGAG+AGG	0.587262	5:+37406906	MsaT027206.1:CDS
GCATGGATCAGAAATACATA+GGG	0.559318	5:+37406901	MsaT027206.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	37406571	37407037	37406571	ID=MsaG027206
Chr5	mRNA	37406571	37407037	37406571	ID=MsaT027206.1;Parent=MsaG027206
Chr5	exon	37406571	37406591	37406571	ID=MsaT027206.1.exon1;Parent=MsaT027206.1
Chr5	CDS	37406571	37406591	37406571	ID=cds.MsaT027206.1;Parent=MsaT027206.1
Chr5	exon	37406786	37407037	37406786	ID=MsaT027206.1.exon2;Parent=MsaT027206.1
Chr5	CDS	37406786	37407037	37406786	ID=cds.MsaT027206.1;Parent=MsaT027206.1

Gene Sequence	>MsaT027206.1 ATGAATGAGATTGGAGTTGAAAATTTTCCTCGACGTGTTGCCGAGAATGGTTTGTATACCAATCAATCTAAAATTCTCCTTTTTGATGAAGAAACTGGTAAATCTTATGACTGTGATGTTCACACTGCGTCAAGAAGCATGGATCAGAAATACATAGGGAGAGGATGGTACAACTTTGTTCTTGAAAAGTGCCTAAAAGTTGGTGACGTTGTTTTGTTCACGGTCAATAATCCTCCTAATAGGATGTATGCTACCGTCGTTAACTGGGACTGA
Protein sequence	>MsaT027206.1 MNEIGVENFPRRVAENGLYTNQSKILLFDEETGKSYDCDVHTASRSMDQKYIGRGWYNFVLEKCLKVGDVVLFTVNNPPNRMYATVVNWD*