AlfalfaGEDB | MsaG027213

M. sativa ssp. caerulea / MsaG027213

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027213	XP_013442386.1	94.231	676	20	4	1	676	1	657	0.0	1235

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027213	sp\|Q9C660\|PEK10_ARATH	66.979	427	133	5	253	673	330	754	0.0	610

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027213	tr\|A0A072TGW2\|A0A072TGW2_MEDTR	94.231	676	20	4	1	676	1	657	0.0	1235

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027213	MtrunA17_Chr0c01g0489481	94.231	676	20	4	1	676	1	657	0.0	1235
MsaG027213	MtrunA17_Chr7g0221191	57.194	556	208	11	135	672	177	720	0.0	595
MsaG027213	MtrunA17_Chr5g0413511	65.782	339	108	3	338	668	47	385	1.19e-165	480
MsaG027213	MtrunA17_Chr6g0485761	60.452	354	128	4	327	668	272	625	2.86e-153	459
MsaG027213	MtrunA17_Chr3g0144481	59.714	350	129	3	331	668	70	419	3.26e-151	446
MsaG027213	MtrunA17_Chr8g0373501	58.112	339	130	3	338	664	325	663	2.48e-143	433
MsaG027213	MtrunA17_Chr5g0403891	57.558	344	137	3	338	672	244	587	5.28e-139	420
MsaG027213	MtrunA17_Chr6g0485721	58.385	322	126	3	335	650	83	402	1.52e-130	391
MsaG027213	MtrunA17_Chr8g0341881	51.525	295	137	3	337	629	392	682	1.26e-102	330
MsaG027213	MtrunA17_Chr7g0262521	52.681	317	140	6	338	649	334	645	4.92e-102	328

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027213	AT1G26150.1	66.979	427	133	5	253	673	330	754	0.0	610
MsaG027213	AT5G38560.1	56.844	526	206	8	160	672	148	665	0.0	573
MsaG027213	AT1G23540.1	47.690	606	262	13	109	673	111	702	1.10e-164	490
MsaG027213	AT3G24550.1	61.625	357	124	4	327	670	257	613	3.44e-159	474
MsaG027213	AT1G52290.1	58.601	343	131	3	335	666	128	470	4.76e-150	445
MsaG027213	AT4G34440.2	58.263	357	138	3	331	676	293	649	5.59e-150	451
MsaG027213	AT4G34440.1	58.263	357	138	3	331	676	293	649	5.59e-150	451
MsaG027213	AT1G26150.2	66.038	318	100	5	253	564	330	645	6.19e-148	444
MsaG027213	AT3G24540.1	50.897	446	157	7	203	644	92	479	9.45e-148	438
MsaG027213	AT2G18470.1	58.721	344	132	3	331	664	265	608	1.65e-144	435

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 222 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGATGGTGATGTTGC+TGG	0.440253	5:-37496214	None:intergenic
AAACGTGTTAAAATCGCAGC+TGG	0.552419	5:+37497823	MsaT027213.1:CDS
AAATTTACCTGATTCAGTTG+AGG	0.584200	5:-37497004	None:intergenic
AACCACCACAATCACCGCCT+AGG	0.645881	5:+37496545	MsaT027213.1:CDS
AACTAATTCCTCCGGATTGA+GGG	0.429052	5:-37496840	None:intergenic
AACTCGAGCCCTCAATCCGG+AGG	0.634910	5:+37496832	MsaT027213.1:CDS
AACTGGGGAATTTGAGAGTT+TGG	0.286206	5:+37499577	MsaT027213.1:CDS
AAGAAATAAGATTGTTTCGG+AGG	0.542523	5:+37499904	MsaT027213.1:CDS
AAGGTCAACCTGTACTCGAA+TGG	0.547474	5:+37497797	MsaT027213.1:CDS
AAGTCTGATGTATATTCTTT+TGG	0.285909	5:+37498490	MsaT027213.1:CDS

Showing 1 to 10 of 222 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	37496115	37499989	37496115	ID=MsaG027213
Chr5	mRNA	37496115	37499989	37496115	ID=MsaT027213.1;Parent=MsaG027213
Chr5	exon	37496115	37497018	37496115	ID=MsaT027213.1.exon1;Parent=MsaT027213.1
Chr5	CDS	37496115	37497018	37496115	ID=cds.MsaT027213.1;Parent=MsaT027213.1
Chr5	exon	37497285	37497689	37497285	ID=MsaT027213.1.exon2;Parent=MsaT027213.1
Chr5	CDS	37497285	37497689	37497285	ID=cds.MsaT027213.1;Parent=MsaT027213.1
Chr5	exon	37497794	37497880	37497794	ID=MsaT027213.1.exon3;Parent=MsaT027213.1
Chr5	CDS	37497794	37497880	37497794	ID=cds.MsaT027213.1;Parent=MsaT027213.1
Chr5	exon	37498112	37498182	37498112	ID=MsaT027213.1.exon4;Parent=MsaT027213.1
Chr5	CDS	37498112	37498182	37498112	ID=cds.MsaT027213.1;Parent=MsaT027213.1
Chr5	exon	37498271	37498347	37498271	ID=MsaT027213.1.exon5;Parent=MsaT027213.1
Chr5	CDS	37498271	37498347	37498271	ID=cds.MsaT027213.1;Parent=MsaT027213.1
Chr5	exon	37498447	37498591	37498447	ID=MsaT027213.1.exon6;Parent=MsaT027213.1
Chr5	CDS	37498447	37498591	37498447	ID=cds.MsaT027213.1;Parent=MsaT027213.1
Chr5	exon	37499548	37499709	37499548	ID=MsaT027213.1.exon7;Parent=MsaT027213.1
Chr5	CDS	37499548	37499709	37499548	ID=cds.MsaT027213.1;Parent=MsaT027213.1
Chr5	exon	37499810	37499989	37499810	ID=MsaT027213.1.exon8;Parent=MsaT027213.1
Chr5	CDS	37499810	37499989	37499810	ID=cds.MsaT027213.1;Parent=MsaT027213.1

Gene Sequence

>MsaT027213.1

ATGTCAGCGGCGTCGCCGTCTCCGGCATCCTCTAATACCACCCAACCACCTTCCTCAGCCACTGCTCCGCCACCGCAACAACCATCAGCTGCACTTCCTCCAGCAACATCACCATCTCTTTTAGCTCCTCCTCCAGCCGTGCCGTCTCCTACTCCGACTTCACCAGCGCCTCGTGCTTCAACTCCGTCGCCGCCTCCTGTAGCTCCTACTCTAACCCCGCCAACACGCCCTCTGCCACCGCCACCACAGTCACCTGTTCCGCCAAGAACCTCGCCTCCACCGGATAATTCACCCCCTCCTCCCACTGTTACACCACCCAGACGTTCACCTCCACCACCCCCTAAAAACTCGTCTCAAACTCCACCTCCTAGGCCACAACCACCATCATCACCACCATTACAACCACCATCATCATCGCCACCACCATTACAACCACCACAATCACCGCCTAGGCCATCCCCGGCACCACCAGTACAACCACCATCATCATTCCCATCACCACCACCATTACAACCTGTACCGCCAAGGTCATCACCACCACCATCATCATTACTATCACCACCACCAACATCATCAACCCCTCCTCCTGCCACGTCTATTACACAACCACCTCCACCTCCACCATCAAATTCAACAACACCGAGGCTATCTCCTCCAACACCCTCCTCAATCATTCAACTGTCGCCACCTCCTCCACCGCTGCAGAACGGATCAGAAAACTCGAGCCCTCAATCCGGAGGAATTAGTTCTGGTGCGATATTGGCTATTGCTGTGTGTGGTGGAATTATATTTCTTGGCTTCATTGGAGTTGCTATCTGGTGCTTCAGAAGACAAAGCAAAAAGGATTCTTCTAATCATGGTTATGTCATGCCTTCCACTCTTCCCTCCTCCTCAACTGAATCAGATTCATCATTTTTTAAGATACATGCTGCCTCTACTCCTCTTGTAAGCAGTGATGTTGTGCATTCACCATCTGATCCTGGTGGTGGAATGGGCCACTCGAGGAACTGGTTTTCATATGAAGAGCTAATCAAGGCCACAAATGGTTTCTCGACTCTGAATCTTTTGGGAGAAGGTGGATTTGGCTCTGTGTATAAAGGAATTTTACCTGATGGGAGAGAGATAGCAGTGAAGCAACTCAAAATTGGTGGAAGTCAAGGGGAGAGAGAATTCAAAGCTGAAGTCGACATTATTAGTCGCATACATCATCGTCATTTGGTTTCTTTAGTTGGATATTGCATTCAAGATAACAGAAAAATACTTGTCTATGACTACGTCCCTAACAATACCCTTTATTTTCATCTACACGAAGAAGGTCAACCTGTACTCGAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTTCATGAAGACTGCAATCCTCGGATTATTCATAGAGATATCAAGCCATCAAACATTCTTTTGGATGACAACTATGAAGCTCGTGTTGCAGATTTCGGCCTAGCCAAATTAGCTCAGGATGCAAATACACATGTATCGACGCGTGTCATGGGAACTTTTGGGTATGTTGCTCCTGAATATGCGTCAAGTGGAAAATTGACCGACAAGTCTGATGTATATTCTTTTGGAGTTGTACTTTTGGAACTCATTACCGGACGGATGCCCGTAGATCCATCACAAATGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCATTGCTTAGTGATGCACTTGAAACTGGGGAATTTGAGAGTTTGGTAGATCCAAAGCTACGGAAGAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGACATTCAGCTTCTAAGAGACCTCGCATGGGACAGGTTGTTAGAACTTTCGAAAGCTTAGCAACTTCAGATCTAACAAACGGAATGCGAGTTGGTGAAAGCCAGGCATTTGACTCTGCACAACAATCTGAAGAAATAAGATTGTTTCGGAGGATGGCATTTGGTAGTCAAAATTATAGCTCCGAATATTTTAATCACTCTAGCTTGCGTCTGTAA

Protein sequence

>MsaT027213.1

MSAASPSPASSNTTQPPSSATAPPPQQPSAALPPATSPSLLAPPPAVPSPTPTSPAPRASTPSPPPVAPTLTPPTRPLPPPPQSPVPPRTSPPPDNSPPPPTVTPPRRSPPPPPKNSSQTPPPRPQPPSSPPLQPPSSSPPPLQPPQSPPRPSPAPPVQPPSSFPSPPPLQPVPPRSSPPPSSLLSPPPTSSTPPPATSITQPPPPPPSNSTTPRLSPPTPSSIIQLSPPPPPLQNGSENSSPQSGGISSGAILAIAVCGGIIFLGFIGVAIWCFRRQSKKDSSNHGYVMPSTLPSSSTESDSSFFKIHAASTPLVSSDVVHSPSDPGGGMGHSRNWFSYEELIKATNGFSTLNLLGEGGFGSVYKGILPDGREIAVKQLKIGGSQGEREFKAEVDIISRIHHRHLVSLVGYCIQDNRKILVYDYVPNNTLYFHLHEEGQPVLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDDNYEARVADFGLAKLAQDANTHVSTRVMGTFGYVAPEYASSGKLTDKSDVYSFGVVLLELITGRMPVDPSQMGDESLVEWARPLLSDALETGEFESLVDPKLRKNYIDSEMFCMIEVAAACVRHSASKRPRMGQVVRTFESLATSDLTNGMRVGESQAFDSAQQSEEIRLFRRMAFGSQNYSSEYFNHSSLRL*