AlfalfaGEDB | MsaG027307

M. sativa ssp. caerulea / MsaG027307

KEGG: -
GO: -
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027307	XP_003614253.1	90.909	803	61	4	1	799	1	795	0.0	1446

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027307	sp\|Q9SCZ4\|FERON_ARATH	42.432	806	395	19	41	799	32	815	0.0	589

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027307	tr\|G7JY52\|G7JY52_MEDTR	90.909	803	61	4	1	799	1	795	0.0	1446

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG027307	0.839791	2.368594e-57	9.185902e-55
MsaG000070	MsaG027307	0.812953	5.629838e-51	1.033799e-48
MsaG000083	MsaG027307	0.810800	1.648415e-50	2.870511e-48
MsaG000110	MsaG027307	0.818783	2.858509e-52	6.088611e-50
MsaG000113	MsaG027307	0.832438	1.709642e-55	5.309078e-53
MsaG000128	MsaG027307	0.837492	9.236290e-57	3.335340e-54
MsaG000151	MsaG027307	0.848409	1.182504e-59	6.070421e-57
MsaG000153	MsaG027307	0.807835	7.078055e-50	1.147319e-47
MsaG000207	MsaG027307	0.815928	1.246809e-51	2.467507e-49
MsaG000236	MsaG027307	0.814950	2.052744e-51	3.963070e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027307	MtrunA17_Chr5g0420181	91.429	770	55	3	34	799	19	781	0.0	1434
MsaG027307	MtrunA17_Chr5g0420161	92.460	557	38	1	247	799	1	557	0.0	1059
MsaG027307	MtrunA17_Chr7g0245131	42.312	839	400	23	16	799	5	814	0.0	580
MsaG027307	MtrunA17_Chr5g0420151	41.262	824	422	23	13	801	9	805	0.0	554
MsaG027307	MtrunA17_Chr5g0420171	40.048	834	396	26	13	801	9	783	1.80e-176	528
MsaG027307	MtrunA17_Chr1g0190581	37.139	832	434	23	21	799	7	802	7.53e-159	484
MsaG027307	MtrunA17_Chr6g0455321	37.751	845	433	29	12	799	7	815	3.84e-157	481
MsaG027307	MtrunA17_Chr4g0025961	38.519	797	424	26	43	797	34	806	5.07e-156	477
MsaG027307	MtrunA17_Chr7g0274261	36.912	829	438	25	21	799	14	807	1.25e-151	465
MsaG027307	MtrunA17_Chr7g0219611	38.722	798	414	26	41	798	32	794	1.88e-150	462

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027307	AT3G51550.1	42.432	806	395	19	41	799	32	815	0.0	589
MsaG027307	AT5G39000.1	39.736	833	421	25	16	799	1	801	5.24e-180	539
MsaG027307	AT5G38990.1	38.922	835	432	26	16	799	1	808	1.09e-166	505
MsaG027307	AT3G04690.1	37.711	830	424	26	22	799	7	795	1.18e-164	499
MsaG027307	AT5G28680.1	37.831	830	431	28	19	799	6	799	4.32e-162	492
MsaG027307	AT5G28680.2	37.831	830	431	28	19	799	6	799	4.32e-162	492
MsaG027307	AT5G24010.1	37.195	820	427	29	15	801	5	769	5.02e-147	452
MsaG027307	AT5G59700.1	38.668	781	412	23	40	799	26	760	2.43e-145	448
MsaG027307	AT1G30570.1	35.910	841	444	26	10	799	2	798	1.84e-143	444
MsaG027307	AT3G46290.1	36.433	785	425	26	41	799	27	763	6.65e-142	439

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Find 139 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTAGAGATTTGTGT+TGG	0.554926	5:+41933428	MsaT027307.1:CDS
AAAAGTGATGTTTATTCATT+TGG	0.232022	5:+41933680	MsaT027307.1:CDS
AAAGGAAGAACAATATTAAG+AGG	0.469551	5:-41931642	None:intergenic
AAAGGAATGATCATGCTTGA+TGG	0.449141	5:+41933182	MsaT027307.1:CDS
AAAGGGAATGAGTAGGTCAA+TGG	0.421762	5:-41931910	None:intergenic
AAAGTCATCGAACATATTAT+TGG	0.272169	5:+41933514	MsaT027307.1:CDS
AAAGTGATGTTTATTCATTT+GGG	0.283274	5:+41933681	MsaT027307.1:CDS
AACAGAAGCAATCACTTTCA+TGG	0.373672	5:+41933402	MsaT027307.1:CDS
AACCCAAAATCTGCAACCTT+TGG	0.475197	5:-41933551	None:intergenic
AAGAAATCCTTAGTGATATA+AGG	0.335673	5:-41932093	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	41931586	41933997	41931586	ID=MsaG027307
Chr5	mRNA	41931586	41933997	41931586	ID=MsaT027307.1;Parent=MsaG027307
Chr5	exon	41931586	41933997	41931586	ID=MsaT027307.1.exon1;Parent=MsaT027307.1
Chr5	CDS	41931586	41933997	41931586	ID=cds.MsaT027307.1;Parent=MsaT027307.1

Gene Sequence

>MsaT027307.1

ATGAAGGAAACTCACATAATAGTGTCATCTAGATTTGTAACTATCTTTATACCACACCTCTTAATATTGTTCTTCCTTTTCTTCATTCATTTAACATCTTGTGATGATTCTACAAACATCCCTTCAGACAAAATCCTCCTTAACTGTGGTTCATCAGGATCATCAACATACAATGGTGTAAATTGGATAGGAGACATTGGAACACCTTTCTTACCTCAACCATATGACACAACTTCATCAACAACACTCTTAAACTCAAGCACACACAAATTTAAAGTAGCACCAAAAATCCCATATTCAACTGCAAGAATAATTCATCATTCTCCATTGACCTACTCATTCCCTTTCTCTTCCAAAGGCCTTAAATTCATTCGTTTATACTTTCTCTCAACTTCATTTTTACCAATAAAGTATTCAAATTCCAACTCCTATTTTTCAGTCAAATCCGGTCCTTACACTCTTGTTAACAACTTCAATCCATTACTTGCTTCACAAGAAATCAAATCACCTTATATCACTAAGGATTTCTTTGTTAACAACAATGAAAAGAAACTCAATATTACTTTCACTCCATCTCCTCAAATTCACAAAGCTTTTGCTTTTATAAATGGAATTGAAATATTCTCAGTACCTAACAAATTATTCTCTCATGCTTCAAATTCTGAGGTTCATGTTCCTTATCTTGGACAAAAAGAACCGTTTATTATCAGCAATGAACATGCTTTTGAGAAGCTTTACATGGTCAACATGGGTAATAGTGAACCAGATAATAAAAATGCATTTGGGTCATGGTTAGATGATATCAACTACATATCTGGTTCACAAGATGGAACTGTTCTTGTCTTGAAGGATGCTAGAGTTGATATGATTCGAAGTTTTCTCGATTCAAATGACTATAACTATTCAGCACCTGATGAGTTATATTGGTCTGCAAGAACAATGAGTAGTAGAAATGGTGATTCAAACATAAGGTATAATTTAACATGGTCATTTAGTGTTGATTCTGGATTCAAATATCTTGTTAGGCTTCATTTCTGTGAGATATCGATGTCGGTAACAGATATTAATCAGAGGGTGTTTGGTGTTTATATAAACAACCAGACAGCAGAGGAGAAATTGGATTTAGTTGCTTTGGCTGGTGAACCTTTTAGTCCTTTGTATAGGGACTATGTTGTAATGGTTCCTATAGAGACTATGTTGATCTCACTTCATCCGAATTTGGAGTCAAAACCAAAGTATGCTGATGCTATATTGAATGGTGTTGAGATTATCAAGTTAAGTGATAGCAATTATAATCTTGCTGCAAGTTTCCAATTATTACACAACAAGAAGAAATTTCCAATTTGTATTGTTGTTGTAGCTAGTACTTTAGGTTCCACTTTGGGACTTTTCATAACATTTTTCATTCTTAGAAGAAAAGGGTGGACAGTAATAAAAAAGGGAACTTTGAATTCTACTGCAAAAGGTGAAGAAAAGATTCAAGTAAAAGTGATATCAGGTAATTGTTATCAATTCACTTTAACAGAGATAATATCAGCAACAAATAACTTCAATGATGATCTTGTCATTGGTGAAGGTGGTTTTGGAAAGGTATACAAAGGAATGATCATGCTTGATGGAGTGACTAATGTGGCGATAAAGCGTGCTAAACTGAGTTCACGGCAAGGACTTAAGGAATTTCAAAATGAGATCAATTTTCATTCATTTTATCACATGAATTTAGTGTCATTGTTGGGCTATTGCCAAGAGAGCATTGAACTTATAATTGTGTATGAATACATGGATCAAGGTCCACTTTGTGATCATTTATACAAGAAACAGAAGCAATCACTTTCATGGAATAAAAGACTAGAGATTTGTGTTGGTGCAGCTAGAGGAATCCATTACCTTCATACAGGTAGAAAGAATCCGGTGATTCACCGCGATATAAAGTCATCGAACATATTATTGGATCAGAATTTGGTACCAAAGGTTGCAGATTTTGGGTTGTCTAGAATGGTTAATTCTATTTACCACACTCATGTTAGCACTGAGGTTAAAGGTACATTTGGATATTTAGACCCTGAGTACTATAAGAGAAGAAAAGTAAGTGAAAAAAGTGATGTTTATTCATTTGGGGTGGTTTTGTTTGAAGTGTTGAGTGGAAGACCAGCAGTGAATTGTATGGCAGTGGAAGAGGAAAATGAGAAAGTTGGTTTGGTAGAATGGGCCATGAGTTGTTACCAAAGTGGAACTATTGATAGATTGGTTGATTCTTGTTTAGAAGGAAAAATAGGGCAAGAATGCTTAATGGCCTTTGTGGAAATTGGTGTTAAGTGCTTGGCTAGCAAGAGTTCAGAAAGGCCAACTATGGGAGAGGTTGTAAGTAATTTGGAGAATATTCTTTCCTTGCAAGAGTTTGGAGGGACATGA

Protein sequence

>MsaT027307.1

MKETHIIVSSRFVTIFIPHLLILFFLFFIHLTSCDDSTNIPSDKILLNCGSSGSSTYNGVNWIGDIGTPFLPQPYDTTSSTTLLNSSTHKFKVAPKIPYSTARIIHHSPLTYSFPFSSKGLKFIRLYFLSTSFLPIKYSNSNSYFSVKSGPYTLVNNFNPLLASQEIKSPYITKDFFVNNNEKKLNITFTPSPQIHKAFAFINGIEIFSVPNKLFSHASNSEVHVPYLGQKEPFIISNEHAFEKLYMVNMGNSEPDNKNAFGSWLDDINYISGSQDGTVLVLKDARVDMIRSFLDSNDYNYSAPDELYWSARTMSSRNGDSNIRYNLTWSFSVDSGFKYLVRLHFCEISMSVTDINQRVFGVYINNQTAEEKLDLVALAGEPFSPLYRDYVVMVPIETMLISLHPNLESKPKYADAILNGVEIIKLSDSNYNLAASFQLLHNKKKFPICIVVVASTLGSTLGLFITFFILRRKGWTVIKKGTLNSTAKGEEKIQVKVISGNCYQFTLTEIISATNNFNDDLVIGEGGFGKVYKGMIMLDGVTNVAIKRAKLSSRQGLKEFQNEINFHSFYHMNLVSLLGYCQESIELIIVYEYMDQGPLCDHLYKKQKQSLSWNKRLEICVGAARGIHYLHTGRKNPVIHRDIKSSNILLDQNLVPKVADFGLSRMVNSIYHTHVSTEVKGTFGYLDPEYYKRRKVSEKSDVYSFGVVLFEVLSGRPAVNCMAVEEENEKVGLVEWAMSCYQSGTIDRLVDSCLEGKIGQECLMAFVEIGVKCLASKSSERPTMGEVVSNLENILSLQEFGGT*