AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027311

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027311 MtrunA17_Chr5g0420081 94.043 235 13 1 1 234 1 235 5.42e-164 452
MsaG027311 MtrunA17_Chr8g0366231 78.205 234 49 2 1 233 1 233 8.19e-122 345
MsaG027311 MtrunA17_Chr4g0061691 71.006 169 49 0 1 169 1 169 3.65e-86 255
MsaG027311 MtrunA17_Chr7g0220121 61.878 181 66 2 1 181 1 178 2.02e-72 221
MsaG027311 MtrunA17_Chr4g0061671 49.711 173 85 2 1 173 1 171 5.21e-54 172
MsaG027311 MtrunA17_Chr3g0122251 49.162 179 82 2 1 173 1 176 4.21e-51 166
MsaG027311 MtrunA17_Chr6g0455511 49.425 174 87 1 1 174 1 173 4.62e-51 166
MsaG027311 MtrunA17_Chr5g0420091 48.000 175 89 2 1 174 1 174 6.38e-51 165
MsaG027311 MtrunA17_Chr7g0220111 43.891 221 115 3 1 213 1 220 9.27e-51 165
MsaG027311 MtrunA17_Chr8g0351051 46.569 204 105 4 1 203 1 201 1.00e-49 163
MsaG027311 MtrunA17_Chr2g0308271 49.367 158 77 1 55 212 26 180 1.64e-48 158
MsaG027311 MtrunA17_Chr6g0474371 49.425 174 85 2 1 172 1 173 2.84e-47 155
MsaG027311 MtrunA17_Chr2g0279821 45.349 172 92 2 1 172 1 170 3.50e-46 153
MsaG027311 MtrunA17_Chr7g0246431 49.412 170 85 1 1 170 1 169 8.29e-46 151
MsaG027311 MtrunA17_Chr2g0284911 43.889 180 94 2 1 177 16 191 7.97e-44 148
MsaG027311 MtrunA17_Chr3g0097101 42.703 185 99 2 1 182 16 196 4.18e-43 145
MsaG027311 MtrunA17_Chr8g0351031 40.183 219 109 4 1 203 1 213 5.36e-43 145
MsaG027311 MtrunA17_Chr8g0380021 41.111 180 99 2 1 177 17 192 1.56e-40 139
MsaG027311 MtrunA17_Chr5g0411691 43.023 172 95 2 1 172 1 169 4.23e-40 137
MsaG027311 MtrunA17_Chr3g0077501 38.764 178 108 1 1 178 1 177 8.86e-39 134
MsaG027311 MtrunA17_Chr4g0057151 45.198 177 84 3 1 171 1 170 1.38e-38 133
MsaG027311 MtrunA17_Chr1g0204111 45.143 175 90 3 1 172 17 188 1.50e-38 134
MsaG027311 MtrunA17_Chr8g0351041 44.910 167 80 3 1 161 1 161 5.10e-38 130
MsaG027311 MtrunA17_Chr4g0049541 41.711 187 100 3 1 180 1 185 5.10e-38 132
MsaG027311 MtrunA17_Chr5g0412461 47.429 175 85 5 1 172 1 171 7.58e-38 131
MsaG027311 MtrunA17_Chr4g0018421 36.232 207 111 3 1 200 1 193 1.40e-36 127
MsaG027311 MtrunA17_Chr1g0164791 37.727 220 122 7 1 210 1 215 8.74e-36 126
MsaG027311 MtrunA17_Chr5g0412271 41.860 172 99 1 1 172 1 171 1.16e-34 123
MsaG027311 MtrunA17_Chr3g0125241 44.218 147 76 3 1 146 26 167 5.43e-33 118
MsaG027311 MtrunA17_Chr4g0049901 38.743 191 107 3 1 189 27 209 1.18e-32 118
MsaG027311 MtrunA17_Chr4g0020221 40.761 184 79 4 1 171 1 167 5.73e-32 117
MsaG027311 MtrunA17_Chr3g0142191 33.193 238 124 6 1 233 1 208 8.38e-30 110
MsaG027311 MtrunA17_Chr1g0159661 38.462 169 96 4 1 169 1 161 5.12e-29 107
MsaG027311 MtrunA17_Chr2g0308251 65.789 76 26 0 1 76 1 76 6.15e-29 104
MsaG027311 MtrunA17_Chr5g0427401 37.079 178 97 5 1 172 1 169 4.24e-28 106
MsaG027311 MtrunA17_Chr5g0404951 33.690 187 98 4 1 174 1 174 3.03e-25 99.0
MsaG027311 MtrunA17_Chr8g0377561 75.862 58 14 0 1 58 1 58 4.73e-25 94.7
MsaG027311 MtrunA17_Chr7g0246381 72.131 61 17 0 1 61 1 61 1.44e-24 92.8
MsaG027311 MtrunA17_Chr1g0173161 62.319 69 26 0 1 69 1 69 1.84e-23 90.1
MsaG027311 MtrunA17_Chr5g0427921 64.407 59 21 0 1 59 1 59 4.23e-22 85.9
MsaG027311 MtrunA17_Chr3g0134451 55.128 78 35 0 1 78 1 78 6.32e-21 89.4
MsaG027311 MtrunA17_Chr4g0044071 58.621 58 24 0 1 58 1 58 2.19e-18 77.8
MsaG027311 MtrunA17_Chr5g0425191 60.345 58 23 0 1 58 1 58 4.17e-18 77.0
MsaG027311 MtrunA17_Chr8g0377551 43.519 108 58 2 63 168 1 107 7.41e-18 78.2
MsaG027311 MtrunA17_Chr3g0099421 44.578 83 43 1 2 81 34 116 2.92e-17 78.2
MsaG027311 MtrunA17_Chr8g0357771 46.479 71 35 1 1 68 1 71 1.28e-16 75.1
MsaG027311 MtrunA17_Chr1g0208561 44.928 69 37 1 2 70 9 76 1.89e-16 75.5
MsaG027311 MtrunA17_Chr2g0292791 47.887 71 34 1 2 69 9 79 2.44e-16 75.5
MsaG027311 MtrunA17_Chr3g0089141 44.928 69 37 1 2 70 9 76 2.67e-16 75.1
MsaG027311 MtrunA17_Chr1g0149391 49.296 71 33 1 2 69 9 79 2.90e-16 75.1
MsaG027311 MtrunA17_Chr3g0099411 46.479 71 35 1 2 69 9 79 3.66e-16 74.7
MsaG027311 MtrunA17_Chr1g0206701 46.479 71 35 1 2 69 9 79 4.96e-16 74.7
MsaG027311 MtrunA17_Chr1g0206721 46.479 71 35 1 2 69 9 79 5.06e-16 74.7
MsaG027311 MtrunA17_Chr8g0355091 46.479 71 35 1 2 69 9 79 6.86e-16 74.3
MsaG027311 MtrunA17_Chr1g0166611 51.562 64 29 1 16 79 20 81 8.21e-16 71.6
MsaG027311 MtrunA17_Chr5g0419601 48.571 70 35 1 1 70 8 76 1.32e-15 73.6
MsaG027311 MtrunA17_Chr4g0052061 34.711 121 75 3 1 118 1 120 1.33e-15 71.6
MsaG027311 MtrunA17_Chr2g0325971 43.478 69 38 1 2 70 9 76 1.62e-15 73.2
MsaG027311 MtrunA17_Chr5g0422421 40.860 93 44 2 2 87 9 97 2.26e-15 72.8
MsaG027311 MtrunA17_Chr1g0188671 47.826 69 35 1 2 70 47 114 2.84e-15 73.2
MsaG027311 MtrunA17_Chr1g0208581 46.377 69 34 1 2 67 9 77 2.85e-15 72.4
MsaG027311 MtrunA17_Chr2g0317451 47.826 69 35 1 2 70 9 76 3.36e-15 72.4
MsaG027311 MtrunA17_Chr2g0317481 47.826 69 35 1 2 70 9 76 3.39e-15 72.4
MsaG027311 MtrunA17_Chr8g0376821 50.877 57 28 0 1 57 1 57 3.61e-15 71.2
MsaG027311 MtrunA17_Chr3g0119901 32.258 124 75 3 1 120 8 126 3.97e-15 71.6
MsaG027311 MtrunA17_Chr1g0175611 50.877 57 28 0 1 57 1 57 7.39e-15 70.1
MsaG027311 MtrunA17_Chr5g0422941 48.529 68 34 1 2 69 9 75 7.52e-15 71.2
MsaG027311 MtrunA17_Chr1g0187361 53.571 56 26 0 2 57 9 64 8.84e-15 71.2
MsaG027311 MtrunA17_Chr2g0300421 53.571 56 26 0 2 57 9 64 1.18e-14 69.7
MsaG027311 MtrunA17_Chr1g0169761 50.877 57 28 0 1 57 1 57 1.21e-14 69.7
MsaG027311 MtrunA17_Chr1g0175601 39.623 106 60 3 1 103 1 105 1.55e-14 69.3
MsaG027311 MtrunA17_Chr1g0180591 49.123 57 29 0 1 57 1 57 1.58e-14 69.3
MsaG027311 MtrunA17_Chr1g0206991 36.082 97 44 2 2 95 9 90 1.74e-14 69.3
MsaG027311 MtrunA17_Chr4g0060841 43.038 79 44 1 1 78 1 79 2.33e-14 71.2
MsaG027311 MtrunA17_Chr3g0085241 30.303 165 99 4 1 149 40 204 2.58e-14 70.1
MsaG027311 MtrunA17_Chr8g0379021 52.830 53 25 0 2 54 12 64 5.64e-14 67.8
MsaG027311 MtrunA17_Chr4g0074101 47.368 57 30 0 1 57 1 57 9.24e-14 67.8
MsaG027311 MtrunA17_Chr2g0333981 49.123 57 29 0 1 57 11 67 1.35e-13 66.6
MsaG027311 MtrunA17_Chr4g0018951 33.571 140 77 5 16 147 26 157 1.36e-13 66.6
MsaG027311 MtrunA17_Chr3g0089151 42.029 69 39 1 2 70 9 76 2.47e-13 65.1
MsaG027311 MtrunA17_Chr5g0417661 49.057 53 27 0 1 53 56 108 4.37e-13 64.3
MsaG027311 MtrunA17_Chr4g0052081 42.373 59 34 0 1 59 1 59 7.87e-13 64.7
MsaG027311 MtrunA17_Chr5g0427961 32.456 114 76 1 59 172 2 114 1.80e-12 63.5
MsaG027311 MtrunA17_Chr2g0300441 37.234 94 47 3 2 95 9 90 2.80e-12 64.3
MsaG027311 MtrunA17_Chr3g0111841 51.852 54 26 0 8 61 2 55 6.36e-12 59.7
MsaG027311 MtrunA17_Chr8g0356071 37.500 72 42 1 1 69 1 72 7.85e-12 61.6
MsaG027311 MtrunA17_Chr1g0206691 43.333 60 33 1 11 70 1 59 5.05e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027311 AT1G69120.1 63.563 247 76 3 1 233 1 247 2.49e-104 302
MsaG027311 AT1G26310.1 61.694 248 79 5 1 233 1 247 1.25e-100 293
MsaG027311 AT1G69120.2 75.978 179 43 0 1 179 1 179 1.07e-98 287
MsaG027311 AT5G60910.1 66.484 182 61 0 1 182 1 182 9.19e-88 259
MsaG027311 AT1G69120.3 56.757 185 66 3 63 233 1 185 8.77e-62 192
MsaG027311 AT3G30260.1 55.921 152 67 0 1 152 1 152 8.40e-55 176
MsaG027311 AT1G24260.1 51.765 170 80 1 1 168 1 170 2.28e-52 170
MsaG027311 AT1G24260.2 52.047 171 79 2 1 168 1 171 3.18e-51 167
MsaG027311 AT5G15800.1 49.425 174 88 0 1 174 1 174 2.48e-50 165
MsaG027311 AT3G02310.1 46.809 188 100 0 1 188 1 188 3.63e-50 164
MsaG027311 AT5G15800.2 49.425 174 88 0 1 174 1 174 5.04e-50 164
MsaG027311 AT3G02310.2 50.296 169 84 0 1 169 1 169 2.64e-49 160
MsaG027311 AT1G24260.3 53.125 160 72 2 1 157 1 160 3.86e-49 161
MsaG027311 AT3G61120.1 51.685 178 79 3 1 176 1 173 4.36e-48 159
MsaG027311 AT2G45650.1 51.786 168 79 2 1 168 1 166 5.29e-48 159
MsaG027311 AT2G03710.1 43.407 182 101 2 1 181 1 181 5.31e-48 159
MsaG027311 AT2G03710.2 43.407 182 101 2 1 181 1 181 5.34e-48 159
MsaG027311 AT2G03710.3 45.087 173 93 2 1 172 1 172 1.71e-47 155
MsaG027311 AT5G60910.2 56.667 120 52 0 63 182 1 120 3.27e-45 149
MsaG027311 AT4G37940.1 43.353 173 96 2 1 173 1 171 4.75e-44 148
MsaG027311 AT2G14210.1 46.196 184 96 2 1 182 1 183 8.74e-44 147
MsaG027311 AT2G14210.2 46.196 184 96 2 1 182 1 183 1.20e-43 147
MsaG027311 AT4G37940.4 42.105 171 97 2 1 171 1 169 3.26e-41 140
MsaG027311 AT2G42830.1 41.489 188 103 2 1 185 16 199 8.11e-41 140
MsaG027311 AT3G58780.1 42.373 177 95 2 1 174 16 188 3.07e-40 139
MsaG027311 AT3G58780.5 42.373 177 95 2 1 174 22 194 3.12e-40 139
MsaG027311 AT3G57230.1 43.678 174 92 4 1 172 1 170 3.78e-40 138
MsaG027311 AT3G57230.4 43.678 174 92 4 1 172 1 170 3.78e-40 138
MsaG027311 AT2G42830.2 42.632 190 100 4 1 185 16 201 5.41e-40 138
MsaG027311 AT2G45660.1 45.977 174 83 4 1 169 1 168 7.81e-40 137
MsaG027311 AT4G18960.1 40.984 183 93 3 2 177 18 192 1.13e-39 137
MsaG027311 AT4G37940.3 46.154 143 75 2 1 143 1 141 1.21e-39 135
MsaG027311 AT2G22630.1 41.714 175 96 2 1 173 1 171 3.30e-39 135
MsaG027311 AT2G22630.2 41.714 175 96 2 1 173 1 171 3.30e-39 135
MsaG027311 AT3G57230.2 46.309 149 74 4 1 147 1 145 3.34e-38 130
MsaG027311 AT5G13790.2 44.253 174 92 3 1 174 1 169 3.76e-38 134
MsaG027311 AT3G58780.2 40.678 177 91 2 1 174 16 181 4.59e-38 133
MsaG027311 AT3G58780.3 38.384 198 98 2 1 174 16 213 6.52e-38 133
MsaG027311 AT3G57390.3 41.758 182 92 3 1 172 1 178 1.34e-37 131
MsaG027311 AT4G22950.2 44.382 178 87 4 1 175 1 169 1.80e-37 129
MsaG027311 AT2G45660.2 46.296 162 80 3 1 159 1 158 1.99e-37 129
MsaG027311 AT3G57390.1 41.758 182 92 3 1 172 1 178 3.45e-37 131
MsaG027311 AT4G22950.3 44.382 178 87 4 1 175 1 169 4.05e-37 130
MsaG027311 AT4G22950.1 44.382 178 87 4 1 175 1 169 4.05e-37 130
MsaG027311 AT4G09960.5 40.000 180 101 2 1 177 11 186 4.52e-37 130
MsaG027311 AT4G09960.1 40.000 180 101 2 1 177 1 176 4.76e-37 130
MsaG027311 AT4G09960.6 40.000 180 101 2 1 177 2 177 4.89e-37 130
MsaG027311 AT4G09960.3 40.000 180 101 2 1 177 27 202 1.05e-36 130
MsaG027311 AT4G11880.2 47.826 161 75 4 1 157 1 156 1.50e-36 127
MsaG027311 AT4G11880.3 47.826 161 75 4 1 157 1 156 1.50e-36 127
MsaG027311 AT5G13790.1 43.103 174 91 3 1 174 1 166 1.63e-36 129
MsaG027311 AT5G51870.1 36.493 211 126 4 1 207 1 207 1.84e-36 128
MsaG027311 AT5G51870.4 41.111 180 97 5 1 175 1 176 5.92e-36 127
MsaG027311 AT5G51870.3 41.111 180 97 5 1 175 11 186 6.27e-36 127
MsaG027311 AT4G11880.4 47.093 172 82 4 1 168 1 167 1.14e-35 126
MsaG027311 AT4G11880.1 47.093 172 82 4 1 168 1 167 1.14e-35 126
MsaG027311 AT3G58780.4 44.595 148 75 2 1 145 16 159 2.53e-35 127
MsaG027311 AT5G51870.2 45.695 151 74 4 1 147 1 147 3.35e-35 123
MsaG027311 AT5G62165.3 41.566 166 94 3 1 165 1 164 8.80e-35 123
MsaG027311 AT5G62165.1 41.566 166 94 3 1 165 1 164 8.80e-35 123
MsaG027311 AT5G62165.2 41.566 166 94 3 1 165 1 164 8.80e-35 123
MsaG027311 AT2G22540.3 44.379 169 91 3 1 168 1 167 8.90e-35 124
MsaG027311 AT2G22540.1 44.379 169 91 3 1 168 1 167 8.90e-35 124
MsaG027311 AT5G51870.5 45.695 151 74 4 1 147 24 170 1.12e-34 123
MsaG027311 AT4G09960.2 43.836 146 75 2 1 143 1 142 5.36e-34 122
MsaG027311 AT4G09960.4 41.875 160 86 2 1 157 96 251 1.13e-33 124
MsaG027311 AT5G20240.1 39.785 186 98 5 1 183 1 175 1.24e-33 120
MsaG027311 AT2G22540.2 44.379 169 86 3 1 168 1 162 1.77e-33 121
MsaG027311 AT4G24540.1 36.893 206 126 3 1 204 1 204 3.35e-33 120
MsaG027311 AT5G62165.17 41.139 158 90 3 1 157 1 156 6.41e-33 117
MsaG027311 AT5G62165.12 41.139 158 90 3 1 157 1 156 6.41e-33 117
MsaG027311 AT5G62165.11 41.139 158 90 3 1 157 1 156 6.41e-33 117
MsaG027311 AT5G51860.2 36.313 179 106 2 1 175 1 175 7.12e-33 118
MsaG027311 AT5G51860.1 36.994 173 101 2 1 169 1 169 3.11e-32 117
MsaG027311 AT5G65050.3 34.921 189 114 3 1 188 1 181 9.62e-32 115
MsaG027311 AT5G20240.2 43.046 151 76 3 1 148 1 144 1.10e-31 114
MsaG027311 AT5G62165.6 40.940 149 85 3 1 148 1 147 1.55e-31 113
MsaG027311 AT5G62165.9 40.940 149 85 3 1 148 1 147 1.55e-31 113
MsaG027311 AT5G62165.7 40.940 149 85 3 1 148 1 147 1.55e-31 113
MsaG027311 AT5G62165.8 40.940 149 85 3 1 148 1 147 1.55e-31 113
MsaG027311 AT5G62165.13 40.940 149 85 3 1 148 1 147 1.55e-31 113
MsaG027311 AT5G65070.1 38.624 189 100 4 1 183 1 179 3.35e-31 114
MsaG027311 AT1G71692.1 40.331 181 101 1 1 174 1 181 6.73e-31 113
MsaG027311 AT5G65060.1 34.807 181 110 2 1 181 1 173 1.08e-30 112
MsaG027311 AT5G65050.2 36.047 172 102 2 1 172 1 164 1.18e-30 112
MsaG027311 AT5G62165.10 40.506 158 91 3 1 157 1 156 1.53e-30 112
MsaG027311 AT5G62165.4 40.506 158 91 3 1 157 1 156 1.53e-30 112
MsaG027311 AT5G65060.3 35.465 172 103 2 1 172 1 164 3.26e-30 111
MsaG027311 AT5G23260.2 36.000 175 108 2 1 174 1 172 3.53e-30 112
MsaG027311 AT5G23260.4 36.000 175 108 2 1 174 17 188 5.88e-30 112
MsaG027311 AT5G65050.5 34.392 189 104 3 1 188 1 170 6.42e-30 110
MsaG027311 AT5G65080.3 38.854 157 88 2 1 157 8 156 3.68e-29 108
MsaG027311 AT5G65060.2 34.254 181 100 2 1 181 1 162 8.68e-29 107
MsaG027311 AT5G65070.2 35.238 210 109 5 1 183 1 210 1.00e-28 108
MsaG027311 AT5G10140.4 37.736 159 87 3 1 157 1 149 3.73e-28 105
MsaG027311 AT5G65050.1 37.179 156 90 2 1 156 1 148 5.78e-28 105
MsaG027311 AT5G10140.2 37.931 174 96 3 1 172 1 164 1.43e-27 103
MsaG027311 AT5G10140.1 36.612 183 104 3 1 181 1 173 1.46e-27 104
MsaG027311 AT5G23260.1 34.737 190 109 4 1 189 17 192 2.72e-27 105
MsaG027311 AT5G10140.3 37.356 174 97 3 1 172 1 164 6.37e-27 102
MsaG027311 AT1G77080.5 38.286 175 100 3 1 175 1 167 1.82e-26 101
MsaG027311 AT5G23260.3 38.000 150 89 2 1 149 1 147 5.29e-26 101
MsaG027311 AT5G65070.3 33.937 221 98 6 1 183 1 211 6.78e-26 101
MsaG027311 AT1G77080.11 37.791 172 99 3 1 172 1 164 7.68e-26 99.8
MsaG027311 AT3G54340.1 35.593 177 93 6 1 168 1 165 1.33e-25 100
MsaG027311 AT1G77080.4 37.791 172 99 3 1 172 1 164 1.64e-25 99.4
MsaG027311 AT5G65070.5 35.556 180 93 4 1 157 1 180 6.03e-25 98.2
MsaG027311 AT5G65080.2 36.313 179 105 3 1 179 8 177 6.62e-25 97.8
MsaG027311 AT5G65070.4 38.926 149 79 3 1 147 1 139 1.96e-24 95.1
MsaG027311 AT1G77080.2 37.209 172 96 3 1 172 1 160 2.08e-23 93.6
MsaG027311 AT1G77080.8 33.673 196 101 3 1 172 1 191 8.52e-23 92.8
MsaG027311 AT5G62165.14 56.164 73 31 1 1 73 1 72 2.38e-22 88.6
MsaG027311 AT1G31140.1 34.302 172 94 5 1 160 1 165 1.54e-21 89.4
MsaG027311 AT1G31140.2 33.143 175 94 5 1 160 1 167 3.24e-21 88.6
MsaG027311 AT1G77080.12 37.736 159 87 3 1 159 1 147 6.22e-20 83.2
MsaG027311 AT1G22130.1 30.526 190 94 3 1 152 1 190 1.18e-19 86.3
MsaG027311 AT1G77980.1 30.804 224 130 9 1 214 1 209 6.08e-19 84.3
MsaG027311 AT1G77950.3 46.835 79 42 0 1 79 1 79 6.91e-17 77.4
MsaG027311 AT1G77950.2 46.835 79 42 0 1 79 1 79 6.91e-17 77.4
MsaG027311 AT1G77950.1 46.835 79 42 0 1 79 1 79 6.91e-17 77.4
MsaG027311 AT1G77950.4 46.835 79 42 0 1 79 1 79 6.91e-17 77.4
MsaG027311 AT2G34440.1 36.111 108 59 2 1 105 1 101 8.83e-17 75.5
MsaG027311 AT1G65360.1 39.316 117 55 4 1 108 6 115 1.31e-16 76.3
MsaG027311 AT1G18750.4 41.772 79 45 1 1 78 1 79 3.26e-16 77.0
MsaG027311 AT4G37435.1 43.182 88 48 1 1 88 1 86 3.49e-16 74.3
MsaG027311 AT1G18750.1 41.772 79 45 1 1 78 1 79 3.68e-16 77.0
MsaG027311 AT1G18750.3 41.772 79 45 1 1 78 1 79 4.40e-16 77.0
MsaG027311 AT1G01530.1 36.441 118 57 3 1 115 6 108 5.79e-16 75.1
MsaG027311 AT4G36590.1 50.769 65 32 0 2 66 7 71 7.99e-15 72.0
MsaG027311 AT2G24840.1 35.849 106 64 2 1 103 62 166 1.51e-14 71.2
MsaG027311 AT5G60440.1 44.928 69 35 1 2 67 7 75 4.31e-14 70.5
MsaG027311 AT2G03060.3 41.772 79 45 1 1 78 1 79 8.19e-14 70.1
MsaG027311 AT2G03060.7 41.772 79 45 1 1 78 1 79 8.19e-14 70.1
MsaG027311 AT2G03060.1 41.772 79 45 1 1 78 1 79 8.19e-14 70.1
MsaG027311 AT2G03060.2 41.772 79 45 1 1 78 1 79 9.61e-14 70.1
MsaG027311 AT3G66656.1 45.614 57 31 0 1 57 1 57 7.61e-13 65.1
MsaG027311 AT4G37940.2 32.432 111 74 1 63 173 1 110 2.33e-12 63.5
MsaG027311 AT1G69540.1 52.830 53 25 0 1 53 1 53 2.79e-12 65.5
MsaG027311 AT1G72350.1 43.478 69 38 1 2 69 43 111 2.81e-12 64.3
MsaG027311 AT1G69540.2 52.830 53 25 0 1 53 1 53 3.18e-12 65.5
MsaG027311 AT3G04100.1 39.706 68 40 1 2 69 14 80 3.78e-12 63.9
MsaG027311 AT2G26320.1 41.463 82 38 1 1 72 17 98 4.21e-12 61.2
MsaG027311 AT1G47760.1 39.130 69 41 1 1 69 1 68 5.33e-12 62.8

Find 54 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGACATTGAAGCTCTTTA+AGG 0.118825 5:+41998278 None:intergenic
TTGATTATCTTCTCTGATAA+TGG 0.219392 5:-42001268 MsaT027311.1:CDS
CATTTCTGAACTTCAGAAAA+AGG 0.294721 5:-41995863 MsaT027311.1:intron
TTGATTATTCAACTGATTCA+TGG 0.302916 5:-42001237 MsaT027311.1:intron
GACAGGTTACTTTCTCAAAA+AGG 0.314822 5:-42001351 MsaT027311.1:CDS
TTTGTAATTCAGGCACTATA+TGG 0.332000 5:-41998323 MsaT027311.1:intron
CCGCATAGCCATACCTTTCA+TGG 0.344722 5:+41999279 None:intergenic
TATTTATTCAGTGGCAATTA+CGG 0.363630 5:-41994299 MsaT027311.1:intron
CACAAGAATTGGGGAGGAAC+GGG 0.388252 5:-41994268 MsaT027311.1:CDS
ATTAATAATATAGTGGTTCC+AGG 0.389303 5:+41994234 None:intergenic
TGTACGTTATTCAGGAAAAC+TGG 0.392322 5:-41998595 MsaT027311.1:intron
TTACTACAAAATCCACTTCC+CGG 0.394416 5:-41994492 MsaT027311.1:CDS
GATGTATCAACCCTGTAGTT+TGG 0.401883 5:+41994519 None:intergenic
TATTCAGGAAAACTGGACTA+TGG 0.406161 5:-41998588 MsaT027311.1:intron
GGTGAGGGAGCACAAGAATT+GGG 0.408222 5:-41994278 MsaT027311.1:CDS
AAACAGCATGGAGCAGATAC+TGG 0.413144 5:-41999306 MsaT027311.1:intron
TTCAAGAATTAATAATATAG+TGG 0.414683 5:+41994227 None:intergenic
CGGTGAGGGAGCACAAGAAT+TGG 0.414947 5:-41994279 MsaT027311.1:CDS
ACCCTACCCCATGTTCAAAC+CGG 0.420746 5:+41994473 None:intergenic
CACAAGAGGCTGCTTGTCAA+TGG 0.422774 5:-41994548 MsaT027311.1:CDS
AACTATTATGGGAAGGAGTA+AGG 0.437650 5:-42001407 None:intergenic
TTGTAATTCAGGCACTATAT+GGG 0.444407 5:-41998322 MsaT027311.1:intron
AATATAGTGGTTCCAGGGTC+AGG 0.449271 5:+41994240 None:intergenic
TCCACTTCCCGGTTTGAACA+TGG 0.470827 5:-41994481 MsaT027311.1:CDS
CTAGAGCAGCAGTTAGATAC+TGG 0.477948 5:-41998259 MsaT027311.1:CDS
AATGGGAGCAGCCAAACTAC+AGG 0.479756 5:-41994530 MsaT027311.1:CDS
GGAGTAAGGTGCAGCTAAAA+CGG 0.485976 5:-42001393 MsaT027311.1:CDS
AGGAAATGATACTAATACTC+AGG 0.501066 5:-41999243 MsaT027311.1:intron
GGAGAAGGTTGTTGCACAAG+AGG 0.506368 5:-41994562 MsaT027311.1:CDS
AGAATTGGGGAGGAACGGGC+TGG 0.508159 5:-41994264 MsaT027311.1:CDS
TTCAGTGGCAATTACGGTGA+GGG 0.511387 5:-41994293 MsaT027311.1:intron
GAACGGGCTGGACCTGACCC+TGG 0.516728 5:-41994252 MsaT027311.1:CDS
ACAAGAGGCTGCTTGTCAAT+GGG 0.517963 5:-41994547 MsaT027311.1:CDS
CCCATGTTCAAACCGGGAAG+TGG 0.518713 5:+41994480 None:intergenic
GCACAAGAATTGGGGAGGAA+CGG 0.522070 5:-41994269 MsaT027311.1:CDS
TATGCGGAGAGACAACTTGT+AGG 0.528916 5:-41999263 MsaT027311.1:CDS
ATTAAGAATGTGTACTCTGC+GGG 0.530211 5:+41998219 None:intergenic
CCACTTCCCGGTTTGAACAT+GGG 0.530849 5:-41994480 MsaT027311.1:CDS
CACTTCCCGGTTTGAACATG+GGG 0.536584 5:-41994479 MsaT027311.1:intron
ATGAAATTAGATAAAGGAGA+AGG 0.537915 5:-41994583 MsaT027311.1:intron
CCCTACCCCATGTTCAAACC+GGG 0.556961 5:+41994474 None:intergenic
CTGGAACGCCATGAAAGGTA+TGG 0.567577 5:-41999287 MsaT027311.1:CDS
GCAGAATAACATGCTCTCAA+AGG 0.574546 5:-41995724 MsaT027311.1:CDS
TTAGATAAAGGAGAAGGAGA+AGG 0.578474 5:-41994577 MsaT027311.1:intron
AGATACTGGAACGCCATGAA+AGG 0.582088 5:-41999292 MsaT027311.1:CDS
CGACAACAAGATCAATCGAC+AGG 0.587118 5:-42001368 MsaT027311.1:CDS
GTGAGGGAGCACAAGAATTG+GGG 0.596580 5:-41994277 MsaT027311.1:CDS
TTAATAATATAGTGGTTCCA+GGG 0.614066 5:+41994235 None:intergenic
GAATAACATGCTCTCAAAGG+AGG 0.623531 5:-41995721 MsaT027311.1:intron
TATGGAATACACAAGACTCA+AGG 0.635093 5:-41998570 MsaT027311.1:CDS
ATGGGAGCAGCCAAACTACA+GGG 0.654027 5:-41994529 MsaT027311.1:CDS
ATTCAGTGGCAATTACGGTG+AGG 0.654082 5:-41994294 MsaT027311.1:intron
CCATGAAAGGTATGGCTATG+CGG 0.669287 5:-41999279 MsaT027311.1:CDS
AGGGAGCACAAGAATTGGGG+AGG 0.679020 5:-41994274 MsaT027311.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 41994235 42001422 41994235 ID=MsaG027311
Chr5 mRNA 41994235 42001422 41994235 ID=MsaT027311.1;Parent=MsaG027311
Chr5 exon 41994235 41994310 41994235 ID=MsaT027311.1.exon8;Parent=MsaT027311.1
Chr5 CDS 41994235 41994310 41994235 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Chr5 exon 41994480 41994595 41994480 ID=MsaT027311.1.exon7;Parent=MsaT027311.1
Chr5 CDS 41994480 41994595 41994480 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Chr5 exon 41995722 41995763 41995722 ID=MsaT027311.1.exon6;Parent=MsaT027311.1
Chr5 CDS 41995722 41995763 41995722 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Chr5 exon 41995864 41995905 41995864 ID=MsaT027311.1.exon5;Parent=MsaT027311.1
Chr5 CDS 41995864 41995905 41995864 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Chr5 exon 41998234 41998333 41998234 ID=MsaT027311.1.exon4;Parent=MsaT027311.1
Chr5 CDS 41998234 41998333 41998234 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Chr5 exon 41998539 41998603 41998539 ID=MsaT027311.1.exon3;Parent=MsaT027311.1
Chr5 CDS 41998539 41998603 41998539 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Chr5 exon 41999244 41999322 41999244 ID=MsaT027311.1.exon2;Parent=MsaT027311.1
Chr5 CDS 41999244 41999322 41999244 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Chr5 exon 42001238 42001422 42001238 ID=MsaT027311.1.exon1;Parent=MsaT027311.1
Chr5 CDS 42001238 42001422 42001238 ID=cds.MsaT027311.1;Parent=MsaT027311.1
Gene Sequence

>MsaT027311.1

ATGGGAAGGAGTAAGGTGCAGCTAAAACGGATCGACAACAAGATCAATCGACAGGTTACTTTCTCAAAAAGGAGAACCGGTTTGCTCAAAAAAGCTAAAGAAATATCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTATCTTCTCTGATAATGGAAAGCTCTTTGATTATTCAACTGATTCATGCATGGAGCAGATACTGGAACGCCATGAAAGGTATGGCTATGCGGAGAGACAACTTGTAGGAAATGATACTAATACTCAGGAAAACTGGACTATGGAATACACAAGACTCAAGGCAAAGATTGAGCTTTTGCAGAGAAACCACAGGCACTATATGGGAGAAGATTTAGATTCAATGAGCCTTAAAGAGCTTCAATGTCTAGAGCAGCAGTTAGATACTGGTCTCAAGCACATACGTACCCGCAGAACTCAAGTCATGTATGAAGCCATTTCTGAACTTCAGAAAAAGGAGAAAGGGATTCAAGAGCAGAATAACATGCTCTCAAAGGAGATAAAGGAGAAGGAGAAGGTTGTTGCACAAGAGGCTGCTTGTCAATGGGAGCAGCCAAACTACAGGGTTGATACATCTTTCTTACTACAAAATCCACTTCCCGGTTTGAACATGGGTGGCAATTACGGTGAGGGAGCACAAGAATTGGGGAGGAACGGGCTGGACCTGACCCTGGAACCACTATATTATTAA
Protein sequence

>MsaT027311.1

MGRSKVQLKRIDNKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFDYSTDSCMEQILERHERYGYAERQLVGNDTNTQENWTMEYTRLKAKIELLQRNHRHYMGEDLDSMSLKELQCLEQQLDTGLKHIRTRRTQVMYEAISELQKKEKGIQEQNNMLSKEIKEKEKVVAQEAACQWEQPNYRVDTSFLLQNPLPGLNMGGNYGEGAQELGRNGLDLTLEPLYY*