AlfalfaGEDB | MsaG027315

M. sativa ssp. caerulea / MsaG027315

KEGG: -
GO: -
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	RHN55642.1	100.000	61	0	0	1	61	1	61	4.06e-35	127

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	sp\|Q8LLR2\|MADS2_VITVI	90.164	61	6	0	1	61	1	61	2.85e-34	119

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	tr\|A0A396HQM1\|A0A396HQM1_MEDTR	100.000	61	0	0	1	61	1	61	1.94e-35	127

TFs/TRs:

Gene ID	Type	Classification
MsaG027315	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003315	MsaG027315	0.819527	1.938332e-52	4.210059e-50
MsaG006014	MsaG027315	0.817374	5.932010e-52	1.218351e-49
MsaG006029	MsaG027315	0.849325	6.599834e-60	3.495667e-57
MsaG007400	MsaG027315	0.825435	8.337061e-54	2.122399e-51
MsaG013143	MsaG027315	0.826419	4.879285e-54	1.276623e-51
MsaG023971	MsaG027315	0.859198	9.566829e-63	7.214938e-60
MsaG027315	MsaG027568	0.843205	3.014395e-58	1.302880e-55
MsaG027315	MsaG044447	0.812110	8.588627e-51	1.544363e-48
MsaG027315	MsaG046807	0.804732	3.166490e-49	4.770859e-47
MsaG027315	MsaG046813	0.808131	6.127611e-50	1.000329e-47
MsaG027315	MsaG005825	0.816074	1.156913e-51	2.298100e-49
MsaG027315	MsaG033149	0.815546	1.515084e-51	2.969505e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	MtrunA17_Chr5g0420091	100.000	61	0	0	1	61	1	61	3.73e-39	127
MsaG027315	MtrunA17_Chr7g0220111	90.164	61	6	0	1	61	1	61	2.66e-35	119
MsaG027315	MtrunA17_Chr6g0455511	90.164	61	6	0	1	61	1	61	6.19e-35	118
MsaG027315	MtrunA17_Chr3g0122251	88.525	61	7	0	1	61	1	61	1.89e-34	116
MsaG027315	MtrunA17_Chr8g0377561	93.103	58	4	0	1	58	1	58	1.90e-34	112
MsaG027315	MtrunA17_Chr7g0246381	86.885	61	8	0	1	61	1	61	3.25e-34	110
MsaG027315	MtrunA17_Chr4g0061671	86.885	61	8	0	1	61	1	61	4.62e-34	114
MsaG027315	MtrunA17_Chr8g0351051	91.525	59	5	0	1	59	1	59	6.60e-33	112
MsaG027315	MtrunA17_Chr2g0308251	76.271	59	14	0	1	59	1	59	2.90e-30	101
MsaG027315	MtrunA17_Chr3g0077501	77.049	61	14	0	1	61	1	61	6.06e-30	104
MsaG027315	MtrunA17_Chr3g0097101	73.770	61	16	0	1	61	16	76	1.19e-29	104
MsaG027315	MtrunA17_Chr2g0284911	75.410	61	15	0	1	61	16	76	1.41e-29	104
MsaG027315	MtrunA17_Chr8g0380021	73.770	61	16	0	1	61	17	77	3.47e-29	103
MsaG027315	MtrunA17_Chr4g0061691	75.410	61	15	0	1	61	1	61	8.20e-29	102
MsaG027315	MtrunA17_Chr6g0474371	77.049	61	14	0	1	61	1	61	9.69e-29	100
MsaG027315	MtrunA17_Chr7g0246431	76.667	60	14	0	1	60	1	60	1.59e-28	100
MsaG027315	MtrunA17_Chr8g0351041	72.131	61	17	0	1	61	1	61	2.37e-28	99.0
MsaG027315	MtrunA17_Chr8g0351031	72.131	61	17	0	1	61	1	61	4.11e-28	99.8
MsaG027315	MtrunA17_Chr8g0366231	72.131	61	17	0	1	61	1	61	4.53e-28	100
MsaG027315	MtrunA17_Chr4g0057151	73.770	61	16	0	1	61	1	61	8.94e-28	98.6
MsaG027315	MtrunA17_Chr1g0173161	76.271	59	14	0	1	59	1	59	1.55e-27	94.4
MsaG027315	MtrunA17_Chr1g0204111	74.576	59	15	0	1	59	17	75	3.68e-26	95.5
MsaG027315	MtrunA17_Chr5g0427921	66.102	59	20	0	1	59	1	59	5.81e-26	89.7
MsaG027315	MtrunA17_Chr5g0420081	70.492	61	18	0	1	61	1	61	8.25e-26	94.4
MsaG027315	MtrunA17_Chr4g0020221	71.667	60	17	0	1	60	1	60	1.10e-25	94.4
MsaG027315	MtrunA17_Chr4g0018421	67.797	59	19	0	1	59	1	59	1.61e-24	90.1
MsaG027315	MtrunA17_Chr3g0125241	62.295	61	23	0	1	61	26	86	3.50e-24	89.4
MsaG027315	MtrunA17_Chr4g0044071	64.516	62	21	1	1	62	1	61	6.30e-24	86.3
MsaG027315	MtrunA17_Chr3g0142191	62.295	61	23	0	1	61	1	61	7.54e-24	89.0
MsaG027315	MtrunA17_Chr5g0425191	66.129	62	20	1	1	62	1	61	2.54e-23	84.3
MsaG027315	MtrunA17_Chr1g0164791	63.934	61	22	0	1	61	1	61	2.67e-23	87.8
MsaG027315	MtrunA17_Chr7g0220121	68.333	60	19	0	1	60	1	60	3.42e-23	87.8
MsaG027315	MtrunA17_Chr2g0279821	69.492	59	18	0	1	59	1	59	6.62e-23	86.7
MsaG027315	MtrunA17_Chr5g0404951	62.712	59	22	0	1	59	1	59	8.22e-23	86.3
MsaG027315	MtrunA17_Chr1g0159661	57.377	61	26	0	1	61	1	61	5.81e-22	83.2
MsaG027315	MtrunA17_Chr5g0412461	64.407	59	21	0	1	59	1	59	5.92e-22	84.0
MsaG027315	MtrunA17_Chr5g0412271	64.407	59	21	0	1	59	1	59	6.49e-22	84.0
MsaG027315	MtrunA17_Chr5g0411691	60.656	61	24	0	1	61	1	61	7.02e-22	84.0
MsaG027315	MtrunA17_Chr5g0427401	60.656	61	24	0	1	61	1	61	1.54e-21	82.8
MsaG027315	MtrunA17_Chr3g0134451	62.903	62	22	1	1	62	1	61	1.43e-20	82.0
MsaG027315	MtrunA17_Chr4g0049541	62.295	61	23	0	1	61	1	61	3.22e-20	79.3
MsaG027315	MtrunA17_Chr4g0049901	54.098	61	28	0	1	61	27	87	1.95e-19	77.8
MsaG027315	MtrunA17_Chr1g0166611	75.000	44	11	0	16	59	20	63	4.75e-19	74.3
MsaG027315	MtrunA17_Chr2g0292791	57.143	56	24	0	2	57	9	64	1.04e-17	73.2
MsaG027315	MtrunA17_Chr5g0417661	53.226	62	28	1	1	62	56	116	2.88e-17	69.7
MsaG027315	MtrunA17_Chr1g0208581	55.357	56	25	0	2	57	9	64	4.39e-17	71.2
MsaG027315	MtrunA17_Chr1g0208561	53.571	56	26	0	2	57	9	64	5.20e-17	71.2
MsaG027315	MtrunA17_Chr3g0089141	53.571	56	26	0	2	57	9	64	5.48e-17	71.2
MsaG027315	MtrunA17_Chr3g0099421	57.143	56	24	0	2	57	34	89	1.26e-16	70.5
MsaG027315	MtrunA17_Chr2g0325971	51.786	56	27	0	2	57	9	64	1.51e-16	70.1
MsaG027315	MtrunA17_Chr8g0376821	52.632	57	27	0	1	57	1	57	2.24e-16	68.6
MsaG027315	MtrunA17_Chr8g0379021	53.571	56	26	0	2	57	12	67	3.37e-16	68.2
MsaG027315	MtrunA17_Chr1g0206721	53.571	56	26	0	2	57	9	64	4.23e-16	68.9
MsaG027315	MtrunA17_Chr3g0099411	53.571	56	26	0	2	57	9	64	4.43e-16	68.6
MsaG027315	MtrunA17_Chr5g0419601	56.140	57	25	0	1	57	8	64	4.55e-16	68.9
MsaG027315	MtrunA17_Chr8g0357771	50.877	57	28	0	1	57	1	57	5.05e-16	67.8
MsaG027315	MtrunA17_Chr1g0169761	52.632	57	27	0	1	57	1	57	5.96e-16	67.4
MsaG027315	MtrunA17_Chr1g0149391	57.143	56	24	0	2	57	9	64	5.97e-16	68.6
MsaG027315	MtrunA17_Chr1g0188671	53.571	56	26	0	2	57	47	102	8.61e-16	68.6
MsaG027315	MtrunA17_Chr2g0333981	52.632	57	27	0	1	57	11	67	9.33e-16	67.0
MsaG027315	MtrunA17_Chr4g0052061	49.180	61	31	0	1	61	1	61	9.62e-16	66.6
MsaG027315	MtrunA17_Chr8g0355091	53.571	56	26	0	2	57	9	64	9.97e-16	67.8
MsaG027315	MtrunA17_Chr2g0317451	55.357	56	25	0	2	57	9	64	1.35e-15	67.4
MsaG027315	MtrunA17_Chr2g0317481	55.357	56	25	0	2	57	9	64	1.36e-15	67.4
MsaG027315	MtrunA17_Chr1g0206701	53.571	56	26	0	2	57	9	64	1.41e-15	67.4
MsaG027315	MtrunA17_Chr1g0187361	53.571	56	26	0	2	57	9	64	1.41e-15	67.4
MsaG027315	MtrunA17_Chr1g0175611	50.877	57	28	0	1	57	1	57	1.63e-15	66.2
MsaG027315	MtrunA17_Chr1g0180591	49.123	57	29	0	1	57	1	57	2.20e-15	65.9
MsaG027315	MtrunA17_Chr5g0422421	55.357	56	25	0	2	57	9	64	3.35e-15	66.6
MsaG027315	MtrunA17_Chr1g0175601	50.877	57	28	0	1	57	1	57	4.37e-15	65.1
MsaG027315	MtrunA17_Chr4g0074101	49.123	57	29	0	1	57	1	57	5.18e-15	65.5
MsaG027315	MtrunA17_Chr5g0422941	55.357	56	25	0	2	57	9	64	5.69e-15	65.9
MsaG027315	MtrunA17_Chr4g0060841	52.830	53	25	0	1	53	1	53	1.51e-14	65.5
MsaG027315	MtrunA17_Chr1g0206991	50.000	56	28	0	2	57	9	64	1.94e-14	63.5
MsaG027315	MtrunA17_Chr2g0300421	50.000	56	28	0	2	57	9	64	2.54e-14	63.2
MsaG027315	MtrunA17_Chr4g0052081	47.458	59	31	0	1	59	1	59	4.00e-14	62.8
MsaG027315	MtrunA17_Chr2g0300441	50.000	58	27	1	2	57	7	64	1.50e-13	62.0
MsaG027315	MtrunA17_Chr4g0018951	62.222	45	15	1	16	60	26	68	2.34e-13	60.5
MsaG027315	MtrunA17_Chr3g0089151	46.429	56	30	0	2	57	9	64	4.62e-13	58.9
MsaG027315	MtrunA17_Chr3g0111841	52.000	50	24	0	8	57	2	51	7.82e-13	57.0
MsaG027315	MtrunA17_Chr8g0356071	45.614	57	31	0	1	57	1	57	1.05e-12	58.9
MsaG027315	MtrunA17_Chr3g0085241	45.614	57	31	0	1	57	40	96	1.34e-12	59.7
MsaG027315	MtrunA17_Chr3g0119901	45.614	57	31	0	1	57	8	64	1.63e-12	58.9
MsaG027315	MtrunA17_Chr6g0457851	42.857	49	28	0	1	49	11	59	2.66e-11	56.6
MsaG027315	MtrunA17_Chr1g0206691	51.064	47	23	0	11	57	1	47	3.84e-11	55.5
MsaG027315	MtrunA17_Chr1g0187351	51.064	47	23	0	11	57	1	47	4.01e-11	52.8
MsaG027315	MtrunA17_Chr6g0449851	42.857	49	28	0	1	49	1	49	6.99e-11	55.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	AT2G03710.3	88.525	61	7	0	1	61	1	61	2.34e-35	117
MsaG027315	AT1G24260.3	90.164	61	6	0	1	61	1	61	7.46e-35	117
MsaG027315	AT1G24260.1	90.164	61	6	0	1	61	1	61	9.32e-35	117
MsaG027315	AT1G24260.2	90.164	61	6	0	1	61	1	61	9.96e-35	117
MsaG027315	AT5G15800.1	90.164	61	6	0	1	61	1	61	1.47e-34	117
MsaG027315	AT5G15800.2	90.164	61	6	0	1	61	1	61	3.34e-34	116
MsaG027315	AT3G02310.2	86.885	61	8	0	1	61	1	61	8.61e-34	114
MsaG027315	AT2G03710.2	91.525	59	5	0	1	59	1	59	9.05e-33	113
MsaG027315	AT2G03710.1	91.525	59	5	0	1	59	1	59	9.25e-33	113
MsaG027315	AT2G45650.1	89.831	59	6	0	1	59	1	59	2.16e-32	112
MsaG027315	AT3G02310.1	89.831	59	6	0	1	59	1	59	4.88e-32	110
MsaG027315	AT4G09960.2	76.667	60	14	0	1	60	1	60	3.97e-30	105
MsaG027315	AT4G09960.1	75.410	61	15	0	1	61	1	61	5.31e-30	105
MsaG027315	AT4G09960.6	75.410	61	15	0	1	61	2	62	5.37e-30	105
MsaG027315	AT4G09960.5	76.667	60	14	0	1	60	11	70	6.56e-30	105
MsaG027315	AT4G09960.3	75.410	61	15	0	1	61	27	87	1.29e-29	104
MsaG027315	AT4G18960.1	76.667	60	14	0	2	61	18	77	2.07e-29	104
MsaG027315	AT3G58780.1	73.770	61	16	0	1	61	16	76	3.51e-29	103
MsaG027315	AT2G42830.2	73.770	61	16	0	1	61	16	76	4.16e-29	103
MsaG027315	AT2G42830.1	73.770	61	16	0	1	61	16	76	4.26e-29	103
MsaG027315	AT4G09960.4	75.410	61	15	0	1	61	96	156	4.29e-29	105
MsaG027315	AT3G58780.5	73.770	61	16	0	1	61	22	82	4.33e-29	103
MsaG027315	AT5G60910.1	73.770	61	16	0	1	61	1	61	4.85e-29	103
MsaG027315	AT3G58780.2	75.000	60	15	0	1	60	16	75	5.28e-29	102
MsaG027315	AT3G58780.3	73.770	61	16	0	1	61	16	76	5.99e-29	103
MsaG027315	AT4G11880.2	77.049	61	14	0	1	61	1	61	6.32e-29	101
MsaG027315	AT4G11880.3	77.049	61	14	0	1	61	1	61	6.32e-29	101
MsaG027315	AT3G58780.4	73.770	61	16	0	1	61	16	76	6.40e-29	103
MsaG027315	AT4G11880.4	77.049	61	14	0	1	61	1	61	1.02e-28	101
MsaG027315	AT4G11880.1	77.049	61	14	0	1	61	1	61	1.02e-28	101
MsaG027315	AT1G69120.2	70.492	61	18	0	1	61	1	61	3.47e-28	100
MsaG027315	AT3G61120.1	79.661	59	12	0	1	59	1	59	3.57e-28	100
MsaG027315	AT4G22950.2	73.770	61	16	0	1	61	1	61	5.84e-28	98.6
MsaG027315	AT5G62165.14	71.667	60	17	0	1	60	1	60	6.34e-28	96.3
MsaG027315	AT5G62165.17	71.667	60	17	0	1	60	1	60	8.50e-28	97.8
MsaG027315	AT5G62165.12	71.667	60	17	0	1	60	1	60	8.50e-28	97.8
MsaG027315	AT5G62165.11	71.667	60	17	0	1	60	1	60	8.50e-28	97.8
MsaG027315	AT5G62165.6	71.667	60	17	0	1	60	1	60	8.82e-28	97.4
MsaG027315	AT5G62165.9	71.667	60	17	0	1	60	1	60	8.82e-28	97.4
MsaG027315	AT5G62165.7	71.667	60	17	0	1	60	1	60	8.82e-28	97.4
MsaG027315	AT5G62165.8	71.667	60	17	0	1	60	1	60	8.82e-28	97.4
MsaG027315	AT5G62165.13	71.667	60	17	0	1	60	1	60	8.82e-28	97.4
MsaG027315	AT2G45660.2	73.333	60	16	0	1	60	1	60	1.18e-27	97.4
MsaG027315	AT1G69120.1	70.492	61	18	0	1	61	1	61	1.31e-27	99.8
MsaG027315	AT4G22950.3	73.770	61	16	0	1	61	1	61	1.93e-27	98.6
MsaG027315	AT4G22950.1	73.770	61	16	0	1	61	1	61	1.93e-27	98.6
MsaG027315	AT5G62165.10	71.667	60	17	0	1	60	1	60	4.08e-27	97.1
MsaG027315	AT5G62165.4	71.667	60	17	0	1	60	1	60	4.08e-27	97.1
MsaG027315	AT5G62165.3	71.667	60	17	0	1	60	1	60	4.69e-27	97.1
MsaG027315	AT5G62165.1	71.667	60	17	0	1	60	1	60	4.69e-27	97.1
MsaG027315	AT5G62165.2	71.667	60	17	0	1	60	1	60	4.69e-27	97.1
MsaG027315	AT2G45660.1	73.333	60	16	0	1	60	1	60	5.41e-27	97.1
MsaG027315	AT3G57390.3	72.881	59	16	0	1	59	1	59	5.24e-26	94.7
MsaG027315	AT3G57390.1	72.881	59	16	0	1	59	1	59	1.02e-25	94.7
MsaG027315	AT3G57230.2	67.213	61	20	0	1	61	1	61	1.13e-25	92.0
MsaG027315	AT1G26310.1	76.271	59	14	0	1	59	1	59	3.31e-25	93.6
MsaG027315	AT5G13790.1	71.186	59	17	0	1	59	1	59	5.50e-25	93.2
MsaG027315	AT5G13790.2	71.186	59	17	0	1	59	1	59	5.98e-25	93.2
MsaG027315	AT3G30260.1	68.852	61	19	0	1	61	1	61	2.04e-24	91.3
MsaG027315	AT2G14210.1	65.574	61	21	0	1	61	1	61	2.89e-24	90.5
MsaG027315	AT5G10140.4	66.667	60	20	0	1	60	1	60	3.05e-24	89.4
MsaG027315	AT5G20240.2	67.241	58	19	0	1	58	1	58	3.06e-24	88.6
MsaG027315	AT5G10140.2	66.667	60	20	0	1	60	1	60	3.16e-24	89.0
MsaG027315	AT2G14210.2	65.574	61	21	0	1	61	1	61	3.76e-24	90.1
MsaG027315	AT5G10140.3	66.667	60	20	0	1	60	1	60	4.72e-24	89.0
MsaG027315	AT5G23260.3	66.102	59	20	0	1	59	1	59	6.11e-24	89.7
MsaG027315	AT4G37940.3	63.934	61	22	0	1	61	1	61	7.08e-24	88.2
MsaG027315	AT5G20240.1	67.241	58	19	0	1	58	1	58	7.26e-24	89.0
MsaG027315	AT5G51860.2	65.000	60	21	0	1	60	1	60	8.36e-24	88.6
MsaG027315	AT5G51860.1	65.000	60	21	0	1	60	1	60	1.07e-23	88.6
MsaG027315	AT5G23260.2	66.102	59	20	0	1	59	1	59	1.70e-23	89.0
MsaG027315	AT1G71692.1	64.407	59	21	0	1	59	1	59	1.75e-23	88.2
MsaG027315	AT5G65070.4	66.667	60	20	0	1	60	1	60	2.90e-23	85.9
MsaG027315	AT2G22540.3	63.934	61	22	0	1	61	1	61	3.01e-23	88.2
MsaG027315	AT2G22540.1	63.934	61	22	0	1	61	1	61	3.01e-23	88.2
MsaG027315	AT5G65070.3	66.129	62	21	0	1	62	1	62	3.39e-23	87.8
MsaG027315	AT5G65070.1	66.667	60	20	0	1	60	1	60	4.63e-23	86.7
MsaG027315	AT5G23260.1	66.102	59	20	0	1	59	17	75	6.22e-23	87.8
MsaG027315	AT3G57230.1	67.213	61	20	0	1	61	1	61	7.13e-23	87.0
MsaG027315	AT3G57230.4	67.213	61	20	0	1	61	1	61	7.13e-23	87.0
MsaG027315	AT5G23260.4	66.102	59	20	0	1	59	17	75	7.25e-23	87.4
MsaG027315	AT1G22130.1	64.516	62	22	0	1	62	1	62	8.08e-23	88.6
MsaG027315	AT5G65070.5	66.667	60	20	0	1	60	1	60	8.39e-23	86.3
MsaG027315	AT5G51870.2	61.667	60	23	0	1	60	1	60	8.68e-23	85.1
MsaG027315	AT5G65070.2	66.667	60	20	0	1	60	1	60	1.22e-22	86.3
MsaG027315	AT5G51870.1	61.667	60	23	0	1	60	1	60	1.80e-22	85.5
MsaG027315	AT5G10140.1	66.667	60	20	0	1	60	1	60	1.90e-22	85.1
MsaG027315	AT1G77980.1	62.903	62	23	0	1	62	1	62	2.13e-22	87.4
MsaG027315	AT5G51870.5	61.667	60	23	0	1	60	24	83	2.18e-22	84.7
MsaG027315	AT5G51870.4	61.667	60	23	0	1	60	1	60	3.12e-22	85.1
MsaG027315	AT5G51870.3	61.667	60	23	0	1	60	11	70	4.42e-22	84.7
MsaG027315	AT3G54340.1	62.712	59	22	0	1	59	1	59	7.87e-22	84.3
MsaG027315	AT5G65050.2	60.000	60	24	0	1	60	1	60	1.13e-21	82.4
MsaG027315	AT2G22630.1	59.016	61	25	0	1	61	1	61	2.18e-21	82.8
MsaG027315	AT2G22630.2	59.016	61	25	0	1	61	1	61	2.18e-21	82.8
MsaG027315	AT4G37940.4	63.934	61	22	0	1	61	1	61	2.38e-21	82.4
MsaG027315	AT5G65050.1	60.000	60	24	0	1	60	1	60	3.19e-21	81.6
MsaG027315	AT5G65050.5	60.000	60	24	0	1	60	1	60	3.44e-21	81.6
MsaG027315	AT5G65050.3	60.000	60	24	0	1	60	1	60	3.81e-21	81.6
MsaG027315	AT4G37940.1	63.934	61	22	0	1	61	1	61	3.90e-21	82.4
MsaG027315	AT5G65080.2	64.516	62	22	0	1	62	8	69	3.93e-21	81.6
MsaG027315	AT4G24540.1	63.333	60	22	0	1	60	1	60	9.49e-21	81.3
MsaG027315	AT5G65080.3	65.000	60	21	0	1	60	8	67	1.05e-20	80.5
MsaG027315	AT1G31140.1	59.016	61	25	0	1	61	1	61	2.94e-20	79.7
MsaG027315	AT5G65060.3	58.333	60	25	0	1	60	1	60	7.26e-20	78.2
MsaG027315	AT5G65060.2	58.333	60	25	0	1	60	1	60	8.59e-20	77.8
MsaG027315	AT5G65060.1	58.333	60	25	0	1	60	1	60	1.00e-19	77.8
MsaG027315	AT2G22540.2	61.404	57	22	0	1	57	1	57	1.14e-19	78.6
MsaG027315	AT1G31140.2	59.016	61	25	0	1	61	1	61	1.01e-18	75.9
MsaG027315	AT4G37435.1	54.839	62	28	0	1	62	1	62	1.57e-18	74.7
MsaG027315	AT1G77950.3	58.065	62	26	0	1	62	1	62	5.45e-18	74.3
MsaG027315	AT1G77950.2	58.065	62	26	0	1	62	1	62	5.45e-18	74.3
MsaG027315	AT1G77950.1	58.065	62	26	0	1	62	1	62	5.45e-18	74.3
MsaG027315	AT1G77950.4	58.065	62	26	0	1	62	1	62	5.45e-18	74.3
MsaG027315	AT2G03060.3	56.452	62	26	1	1	62	1	61	1.38e-17	74.7
MsaG027315	AT2G03060.7	56.452	62	26	1	1	62	1	61	1.38e-17	74.7
MsaG027315	AT2G03060.1	56.452	62	26	1	1	62	1	61	1.38e-17	74.7
MsaG027315	AT2G03060.2	56.452	62	26	1	1	62	1	61	2.34e-17	73.9
MsaG027315	AT1G77080.11	60.000	60	24	0	1	60	1	60	3.96e-17	70.9
MsaG027315	AT1G77080.5	60.000	60	24	0	1	60	1	60	4.78e-17	70.5
MsaG027315	AT1G77080.12	60.000	60	24	0	1	60	1	60	5.20e-17	69.7
MsaG027315	AT1G77080.4	60.000	60	24	0	1	60	1	60	7.81e-17	70.5
MsaG027315	AT1G18750.4	54.386	57	26	0	1	57	1	57	1.07e-16	72.0
MsaG027315	AT1G18750.1	54.386	57	26	0	1	57	1	57	1.10e-16	72.0
MsaG027315	AT1G18750.3	54.386	57	26	0	1	57	1	57	1.11e-16	72.0
MsaG027315	AT1G77080.2	60.000	60	24	0	1	60	1	60	1.12e-16	70.1
MsaG027315	AT1G01530.1	56.140	57	25	0	1	57	6	62	1.87e-16	70.5
MsaG027315	AT1G77080.8	60.000	60	24	0	1	60	1	60	1.89e-16	70.1
MsaG027315	AT5G60440.1	51.786	56	27	0	2	57	7	62	8.60e-15	66.2
MsaG027315	AT4G36590.1	55.357	56	25	0	2	57	7	62	8.78e-15	65.9
MsaG027315	AT3G66656.1	47.368	57	30	0	1	57	1	57	2.03e-14	63.9
MsaG027315	AT1G65360.1	49.123	57	29	0	1	57	6	62	2.44e-14	64.3
MsaG027315	AT1G69540.2	52.830	53	25	0	1	53	1	53	3.87e-14	65.1
MsaG027315	AT1G69540.1	52.830	53	25	0	1	53	1	53	3.90e-14	64.7
MsaG027315	AT2G34440.1	45.614	57	31	0	1	57	1	57	6.65e-14	62.4
MsaG027315	AT1G72350.1	51.786	56	27	0	2	57	43	98	7.35e-14	63.2
MsaG027315	AT3G04100.1	45.000	60	33	0	2	61	14	73	1.56e-13	62.0
MsaG027315	AT1G47760.1	47.368	57	30	0	1	57	1	57	3.62e-13	60.8
MsaG027315	AT2G24840.1	47.368	57	30	0	1	57	62	118	3.43e-12	58.9
MsaG027315	AT2G26320.1	45.161	62	34	0	1	62	17	78	6.18e-12	55.8
MsaG027315	AT1G29962.1	46.667	60	32	0	2	61	8	67	1.00e-11	57.0
MsaG027315	AT1G28460.1	48.333	60	31	0	2	61	8	67	1.01e-11	57.0
MsaG027315	AT5G26580.1	45.614	57	31	0	1	57	1	57	5.45e-11	55.8

Find 12 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACATTTGCAAAGAGAAGAAA+TGG	0.365480	5:-42099441	MsaT027315.1:CDS
AAGCAATAAAATAATGGGTA+GGG	0.438614	5:-42099511	None:intergenic
CTCTCTCCTTTGTGATGCTG+AGG	0.508762	5:-42099394	MsaT027315.1:CDS
ATGAGTTCTGCAGTGGCACT+AGG	0.518046	5:-42099335	MsaT027315.1:CDS
AAAGCAATAAAATAATGGGT+AGG	0.518687	5:-42099512	None:intergenic
TAAAATAATGGGTAGGGGAA+AGG	0.519037	5:-42099505	None:intergenic
AGCAATAAAATAATGGGTAG+GGG	0.548277	5:-42099510	None:intergenic
AAGAAATGGGATGCTCAAGA+AGG	0.586753	5:-42099427	MsaT027315.1:CDS
CATTTGCAAAGAGAAGAAAT+GGG	0.608010	5:-42099440	MsaT027315.1:CDS
AAGCTCTATGAGTTCTGCAG+TGG	0.649168	5:-42099342	MsaT027315.1:CDS
GAGCAACCTCAGCATCACAA+AGG	0.683343	5:+42099388	None:intergenic
AGAACTCATAGAGCTTTCCA+CGG	0.694795	5:+42099349	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	42099332	42099520	42099332	ID=MsaG027315
Chr5	mRNA	42099332	42099520	42099332	ID=MsaT027315.1;Parent=MsaG027315
Chr5	exon	42099332	42099520	42099332	ID=MsaT027315.1.exon1;Parent=MsaT027315.1
Chr5	CDS	42099332	42099520	42099332	ID=cds.MsaT027315.1;Parent=MsaT027315.1

Gene Sequence	>MsaT027315.1 ATGGGTAGGGGAAAGGTAGAGCTAAAGAGAATTGAGAACAAAATAAATCGTCAAGTTACATTTGCAAAGAGAAGAAATGGGATGCTCAAGAAGGCTTATGAACTCTCTCTCCTTTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTAGCCGTGGAAAGCTCTATGAGTTCTGCAGTGGCACTAGGTAA
Protein sequence	>MsaT027315.1 MGRGKVELKRIENKINRQVTFAKRRNGMLKKAYELSLLCDAEVALIIFSSRGKLYEFCSGTR*