AlfalfaGEDB | MsaG027315

M. sativa ssp. caerulea / MsaG027315

KEGG: -
GO: -
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	RHN55642.1	100.000	61	0	0	1	61	1	61	4.06e-35	127

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	sp\|Q8LLR2\|MADS2_VITVI	90.164	61	6	0	1	61	1	61	2.85e-34	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	tr\|A0A396HQM1\|A0A396HQM1_MEDTR	100.000	61	0	0	1	61	1	61	1.94e-35	127

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TFs/TRs:

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Gene ID	Type	Classification
MsaG027315	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003315	MsaG027315	0.819527	1.938332e-52	4.210059e-50
MsaG006014	MsaG027315	0.817374	5.932010e-52	1.218351e-49
MsaG006029	MsaG027315	0.849325	6.599834e-60	3.495667e-57
MsaG007400	MsaG027315	0.825435	8.337061e-54	2.122399e-51
MsaG013143	MsaG027315	0.826419	4.879285e-54	1.276623e-51
MsaG023971	MsaG027315	0.859198	9.566829e-63	7.214938e-60
MsaG027315	MsaG027568	0.843205	3.014395e-58	1.302880e-55
MsaG027315	MsaG044447	0.812110	8.588627e-51	1.544363e-48
MsaG027315	MsaG046807	0.804732	3.166490e-49	4.770859e-47
MsaG027315	MsaG046813	0.808131	6.127611e-50	1.000329e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	MtrunA17_Chr5g0420091	100.000	61	0	1	61	1	61	3.73e-39	127
MsaG027315	MtrunA17_Chr7g0220111	90.164	61	6	1	61	1	61	2.66e-35	119
MsaG027315	MtrunA17_Chr6g0455511	90.164	61	6	1	61	1	61	6.19e-35	118
MsaG027315	MtrunA17_Chr3g0122251	88.525	61	7	1	61	1	61	1.89e-34	116
MsaG027315	MtrunA17_Chr8g0377561	93.103	58	4	1	58	1	58	1.90e-34	112
MsaG027315	MtrunA17_Chr7g0246381	86.885	61	8	1	61	1	61	3.25e-34	110
MsaG027315	MtrunA17_Chr4g0061671	86.885	61	8	1	61	1	61	4.62e-34	114
MsaG027315	MtrunA17_Chr8g0351051	91.525	59	5	1	59	1	59	6.60e-33	112
MsaG027315	MtrunA17_Chr2g0308251	76.271	59	14	1	59	1	59	2.90e-30	101
MsaG027315	MtrunA17_Chr3g0077501	77.049	61	14	1	61	1	61	6.06e-30	104

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027315	AT2G03710.3	88.525	61	7	1	61	1	61	2.34e-35	117
MsaG027315	AT1G24260.3	90.164	61	6	1	61	1	61	7.46e-35	117
MsaG027315	AT1G24260.1	90.164	61	6	1	61	1	61	9.32e-35	117
MsaG027315	AT1G24260.2	90.164	61	6	1	61	1	61	9.96e-35	117
MsaG027315	AT5G15800.1	90.164	61	6	1	61	1	61	1.47e-34	117
MsaG027315	AT5G15800.2	90.164	61	6	1	61	1	61	3.34e-34	116
MsaG027315	AT3G02310.2	86.885	61	8	1	61	1	61	8.61e-34	114
MsaG027315	AT2G03710.2	91.525	59	5	1	59	1	59	9.05e-33	113
MsaG027315	AT2G03710.1	91.525	59	5	1	59	1	59	9.25e-33	113
MsaG027315	AT2G45650.1	89.831	59	6	1	59	1	59	2.16e-32	112

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Find 12 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAATAAAATAATGGGT+AGG	0.518687	5:-42099512	None:intergenic
AAGAAATGGGATGCTCAAGA+AGG	0.586753	5:-42099427	MsaT027315.1:CDS
AAGCAATAAAATAATGGGTA+GGG	0.438614	5:-42099511	None:intergenic
AAGCTCTATGAGTTCTGCAG+TGG	0.649168	5:-42099342	MsaT027315.1:CDS
ACATTTGCAAAGAGAAGAAA+TGG	0.365480	5:-42099441	MsaT027315.1:CDS
AGAACTCATAGAGCTTTCCA+CGG	0.694795	5:+42099349	None:intergenic
AGCAATAAAATAATGGGTAG+GGG	0.548277	5:-42099510	None:intergenic
ATGAGTTCTGCAGTGGCACT+AGG	0.518046	5:-42099335	MsaT027315.1:CDS
CATTTGCAAAGAGAAGAAAT+GGG	0.608010	5:-42099440	MsaT027315.1:CDS
CTCTCTCCTTTGTGATGCTG+AGG	0.508762	5:-42099394	MsaT027315.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	42099332	42099520	42099332	ID=MsaG027315
Chr5	mRNA	42099332	42099520	42099332	ID=MsaT027315.1;Parent=MsaG027315
Chr5	exon	42099332	42099520	42099332	ID=MsaT027315.1.exon1;Parent=MsaT027315.1
Chr5	CDS	42099332	42099520	42099332	ID=cds.MsaT027315.1;Parent=MsaT027315.1

Gene Sequence	>MsaT027315.1 ATGGGTAGGGGAAAGGTAGAGCTAAAGAGAATTGAGAACAAAATAAATCGTCAAGTTACATTTGCAAAGAGAAGAAATGGGATGCTCAAGAAGGCTTATGAACTCTCTCTCCTTTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTAGCCGTGGAAAGCTCTATGAGTTCTGCAGTGGCACTAGGTAA
Protein sequence	>MsaT027315.1 MGRGKVELKRIENKINRQVTFAKRRNGMLKKAYELSLLCDAEVALIIFSSRGKLYEFCSGTR*