AlfalfaGEDB | MsaG027332

M. sativa ssp. caerulea / MsaG027332

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0000904 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027332	AES97147.1	89.037	374	39	2	1	373	1	373	0.0	662

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027332	sp\|Q69T58\|ROC8_ORYSJ	55.882	170	68	4	34	202	15	178	1.01e-53	191

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027332	tr\|G7JWW7\|G7JWW7_MEDTR	89.037	374	39	2	1	373	1	373	0.0	662

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TFs/TRs:

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Gene ID	Type	Classification
MsaG027332	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000029	MsaG027332	0.807765	7.324919e-50	1.185319e-47
MsaG000169	MsaG027332	0.812164	8.358746e-51	1.505038e-48
MsaG000478	MsaG027332	0.836106	2.076128e-56	7.189001e-54
MsaG000830	MsaG027332	0.806201	1.563581e-49	2.438143e-47
MsaG003351	MsaG027332	0.810483	1.928581e-50	3.332566e-48
MsaG010429	MsaG027332	0.807680	7.633694e-50	1.232756e-47
MsaG012378	MsaG027332	0.804718	3.188361e-49	4.802187e-47
MsaG013413	MsaG027332	0.809886	2.591055e-50	4.412605e-48
MsaG015914	MsaG027332	0.801572	1.416978e-48	1.985100e-46
MsaG017121	MsaG027332	0.801445	1.504291e-48	2.101375e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027332	MtrunA17_Chr5g0419811	88.770	187	20	1	188	373	1	187	1.02e-116	336
MsaG027332	MtrunA17_Chr5g0419821	87.898	157	18	1	1	157	1	156	1.88e-89	266
MsaG027332	MtrunA17_Chr6g0481041	58.421	190	73	3	1	190	1	184	2.94e-66	223
MsaG027332	MtrunA17_Chr2g0322731	43.678	174	93	2	12	181	74	246	7.35e-42	156
MsaG027332	MtrunA17_Chr5g0410711	46.111	180	95	2	10	188	65	243	5.44e-41	153
MsaG027332	MtrunA17_Chr1g0203671	49.359	156	76	2	32	185	93	247	4.44e-40	151
MsaG027332	MtrunA17_Chr4g0024351	47.020	151	75	2	32	178	58	207	9.41e-40	149
MsaG027332	MtrunA17_Chr8g0350321	48.227	141	72	1	34	174	115	254	1.30e-39	149
MsaG027332	MtrunA17_Chr3g0109391	60.902	133	31	2	214	346	587	698	1.94e-39	149
MsaG027332	MtrunA17_Chr7g0246631	47.518	141	73	1	34	174	91	230	4.71e-39	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027332	AT1G73360.1	56.329	158	68	1	34	191	32	188	1.34e-52	186
MsaG027332	AT1G17920.2	52.667	150	69	2	37	185	24	172	3.91e-46	167
MsaG027332	AT1G17920.1	52.667	150	69	2	37	185	24	172	3.91e-46	167
MsaG027332	AT4G04890.2	46.328	177	90	4	33	205	61	236	1.04e-40	153
MsaG027332	AT4G04890.1	46.328	177	90	4	33	205	61	236	1.04e-40	153
MsaG027332	AT4G00730.2	51.493	134	64	1	34	167	134	266	1.64e-39	148
MsaG027332	AT1G05230.12	45.000	200	92	4	2	199	47	230	1.79e-39	148
MsaG027332	AT4G21750.2	50.000	140	69	1	33	172	61	199	1.91e-39	149
MsaG027332	AT4G21750.1	50.000	140	69	1	33	172	61	199	1.91e-39	149
MsaG027332	AT4G21750.3	50.000	140	69	1	33	172	61	199	1.91e-39	149

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Find 91 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATTAGCTTTGAGTTA+TGG	0.345545	5:+42669424	MsaT027332.1:CDS
AAAGATGATATTTGAATTGG+TGG	0.425517	5:-42671558	None:intergenic
AAATAACAATCACCATTGGT+TGG	0.534518	5:-42670860	None:intergenic
AAATGATAACCGTTCACTAA+GGG	0.581718	5:+42670754	MsaT027332.1:CDS
AAATGCTCTACTCAAAGAAG+AGG	0.616166	5:+42670907	MsaT027332.1:CDS
AACAATTACCTCAACAATCA+TGG	0.416923	5:+42671739	MsaT027332.1:CDS
AAGATCAGATGAATCGATGG+TGG	0.602370	5:-42671925	None:intergenic
AAGATCAGATGAATCGATGG+TGG	0.602370	5:-42671955	None:intergenic
AATTGTTCATTCATCAACAA+CGG	0.631258	5:-42671723	None:intergenic
AATTTAATCTGCCCCTCTGG+TGG	0.575675	5:+42670830	MsaT027332.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	42669127	42672265	42669127	ID=MsaG027332
Chr5	mRNA	42669127	42672265	42669127	ID=MsaT027332.1;Parent=MsaG027332
Chr5	exon	42669127	42669281	42669127	ID=MsaT027332.1.exon1;Parent=MsaT027332.1
Chr5	CDS	42669127	42669281	42669127	ID=cds.MsaT027332.1;Parent=MsaT027332.1
Chr5	exon	42669372	42669489	42669372	ID=MsaT027332.1.exon2;Parent=MsaT027332.1
Chr5	CDS	42669372	42669489	42669372	ID=cds.MsaT027332.1;Parent=MsaT027332.1
Chr5	exon	42670740	42670928	42670740	ID=MsaT027332.1.exon3;Parent=MsaT027332.1
Chr5	CDS	42670740	42670928	42670740	ID=cds.MsaT027332.1;Parent=MsaT027332.1
Chr5	exon	42671492	42672084	42671492	ID=MsaT027332.1.exon4;Parent=MsaT027332.1
Chr5	CDS	42671492	42672084	42671492	ID=cds.MsaT027332.1;Parent=MsaT027332.1
Chr5	exon	42672199	42672265	42672199	ID=MsaT027332.1.exon5;Parent=MsaT027332.1
Chr5	CDS	42672199	42672265	42672199	ID=cds.MsaT027332.1;Parent=MsaT027332.1

Gene Sequence

>MsaT027332.1

ATGGAGTTTCAGAGTGGAGGAAGTGGTGGTTCTTTTGATTCTCAAAGTAAGAAAAAACGTTATCGTCGTCCTCACACTCCTAACGAGATTCAAAGAAGTAAGAAGAAACGTTATCGCCGTCCTCACACTCCGAACCAGCTTGAAAAGCTTGAAGAGGTGTTTAAGGAGTGTCCAAAACCTGATGAAAAACAAAAGTTGCAATTAAGCAAAGAATTAGCTTTGAGTTATGGTCAGATCAGATTTTGGTTTCAGAACAAAAGGGTTCAGACGAAGGCAAAACTTGAAAGAAATGATAACCGTTCACTAAGGGCCGAGAATGATAAGATAAGATGTGAGAATATATCTATGAAGGAAGCCCTAGAAAATTTAATCTGCCCCTCTGGTGGTTGTCCTCCAACCAATGGTGATTGTTATTTTGATAGAAAAAGGTTGAGATTGGAAAATGCTCTACTCAAAGAAGAGCTTTATAAAGAATCTAGCATTATATCTGAATACACTGGAAGATCAGTTTTAGGGTTTCCACCAGTTCCACCAATTCAAATATCATCTTTGGATTCAACAATGGGGAGTATTGGACAAGGATTGGTTGGAAATTCATTTGATATTGGTGAAATTCATAACAACCATTCATCGTTGCATTGCCCTAAAGGAAAAGGAAAACTCTTCAATCCATCAAGTTTACCAAGTAGTGGTCCGTTGTTGATGAATGAACAATTACCTCAACAATCATGGACTCCGAGGTATCAAAGTATGCAGGTCGATACCTTTGGCAACACAATGTTGCATGCGCAATATTCTGGACAAGATTCGGCAATTGTGCCCCCACATTTTGATTTAGATGTCCAAAATCATATTTTCTCAGGTGTCAATATCGATTCATCTGATCTTCTACTCCCCACCATCGATTCATCTGATCTTCTACTCCCCACCATCGATTCATCTGATCTTCTACTCCCCACCACTGTCCCGGGTTACACCACTTCATTAGGTGAGACCGGTGCTTCGACAATGCAATTAGGGGAATTTGGATTCGAGGGTTTTGATGATCCGTGGGAATCATTCTTGAATAGCATTTGGCATAATGAAATACTTTCACCTGAAGATATTCAAAAGATGGGATAA

Protein sequence

>MsaT027332.1

MEFQSGGSGGSFDSQSKKKRYRRPHTPNEIQRSKKKRYRRPHTPNQLEKLEEVFKECPKPDEKQKLQLSKELALSYGQIRFWFQNKRVQTKAKLERNDNRSLRAENDKIRCENISMKEALENLICPSGGCPPTNGDCYFDRKRLRLENALLKEELYKESSIISEYTGRSVLGFPPVPPIQISSLDSTMGSIGQGLVGNSFDIGEIHNNHSSLHCPKGKGKLFNPSSLPSSGPLLMNEQLPQQSWTPRYQSMQVDTFGNTMLHAQYSGQDSAIVPPHFDLDVQNHIFSGVNIDSSDLLLPTIDSSDLLLPTIDSSDLLLPTTVPGYTTSLGETGASTMQLGEFGFEGFDDPWESFLNSIWHNEILSPEDIQKMG*