Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027332 | AES97147.1 | 89.037 | 374 | 39 | 2 | 1 | 373 | 1 | 373 | 0.0 | 662 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027332 | sp|Q69T58|ROC8_ORYSJ | 55.882 | 170 | 68 | 4 | 34 | 202 | 15 | 178 | 1.01e-53 | 191 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027332 | tr|G7JWW7|G7JWW7_MEDTR | 89.037 | 374 | 39 | 2 | 1 | 373 | 1 | 373 | 0.0 | 662 |
Gene ID | Type | Classification |
---|---|---|
MsaG027332 | TF | HB-other |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000029 | MsaG027332 | 0.807765 | 7.324919e-50 | 1.185319e-47 |
MsaG000169 | MsaG027332 | 0.812164 | 8.358746e-51 | 1.505038e-48 |
MsaG000478 | MsaG027332 | 0.836106 | 2.076128e-56 | 7.189001e-54 |
MsaG000830 | MsaG027332 | 0.806201 | 1.563581e-49 | 2.438143e-47 |
MsaG003351 | MsaG027332 | 0.810483 | 1.928581e-50 | 3.332566e-48 |
MsaG010429 | MsaG027332 | 0.807680 | 7.633694e-50 | 1.232756e-47 |
MsaG012378 | MsaG027332 | 0.804718 | 3.188361e-49 | 4.802187e-47 |
MsaG013413 | MsaG027332 | 0.809886 | 2.591055e-50 | 4.412605e-48 |
MsaG015914 | MsaG027332 | 0.801572 | 1.416978e-48 | 1.985100e-46 |
MsaG017121 | MsaG027332 | 0.801445 | 1.504291e-48 | 2.101375e-46 |
MsaG019633 | MsaG027332 | 0.836165 | 2.006086e-56 | 6.958852e-54 |
MsaG020907 | MsaG027332 | 0.805479 | 2.213285e-49 | 3.392996e-47 |
MsaG024305 | MsaG027332 | 0.804206 | 4.071249e-49 | 6.059824e-47 |
MsaG027332 | MsaG027652 | 0.808918 | 4.170496e-50 | 6.938548e-48 |
MsaG027332 | MsaG030592 | 0.807746 | 7.391541e-50 | 1.195555e-47 |
MsaG027332 | MsaG030774 | 0.816161 | 1.106322e-51 | 2.202548e-49 |
MsaG027332 | MsaG032476 | 0.810221 | 2.195104e-50 | 3.768850e-48 |
MsaG027332 | MsaG033451 | 0.807317 | 9.109277e-50 | 1.458297e-47 |
MsaG027332 | MsaG033874 | 0.817184 | 6.542163e-52 | 1.337127e-49 |
MsaG027332 | MsaG034076 | 0.806696 | 1.230579e-49 | 1.941458e-47 |
MsaG027332 | MsaG034248 | 0.810954 | 1.527384e-50 | 2.669711e-48 |
MsaG027332 | MsaG034252 | 0.800166 | 2.735530e-48 | 3.712437e-46 |
MsaG027332 | MsaG034385 | 0.803923 | 4.660683e-49 | 6.891535e-47 |
MsaG027332 | MsaG034459 | 0.811072 | 1.440148e-50 | 2.524597e-48 |
MsaG027332 | MsaG034709 | 0.801233 | 1.661072e-48 | 2.309220e-46 |
MsaG027332 | MsaG034713 | 0.805230 | 2.494345e-49 | 3.801920e-47 |
MsaG027332 | MsaG036846 | 0.810077 | 2.357626e-50 | 4.033709e-48 |
MsaG027332 | MsaG040834 | 0.805537 | 2.152381e-49 | 3.304055e-47 |
MsaG027332 | MsaG046798 | 0.801243 | 1.653473e-48 | 2.299169e-46 |
MsaG027332 | MsaG008439 | 0.823586 | 2.260463e-53 | 5.471590e-51 |
MsaG027332 | MsaG012606 | 0.822740 | 3.553921e-53 | 8.407703e-51 |
MsaG027332 | MsaG026444 | 0.835057 | 3.815150e-56 | 1.280124e-53 |
MsaG027332 | MsaG031512 | 0.806856 | 1.139113e-49 | 1.803829e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027332 | MtrunA17_Chr5g0419811 | 88.770 | 187 | 20 | 1 | 188 | 373 | 1 | 187 | 1.02e-116 | 336 |
MsaG027332 | MtrunA17_Chr5g0419821 | 87.898 | 157 | 18 | 1 | 1 | 157 | 1 | 156 | 1.88e-89 | 266 |
MsaG027332 | MtrunA17_Chr6g0481041 | 58.421 | 190 | 73 | 3 | 1 | 190 | 1 | 184 | 2.94e-66 | 223 |
MsaG027332 | MtrunA17_Chr2g0322731 | 43.678 | 174 | 93 | 2 | 12 | 181 | 74 | 246 | 7.35e-42 | 156 |
MsaG027332 | MtrunA17_Chr5g0410711 | 46.111 | 180 | 95 | 2 | 10 | 188 | 65 | 243 | 5.44e-41 | 153 |
MsaG027332 | MtrunA17_Chr1g0203671 | 49.359 | 156 | 76 | 2 | 32 | 185 | 93 | 247 | 4.44e-40 | 151 |
MsaG027332 | MtrunA17_Chr4g0024351 | 47.020 | 151 | 75 | 2 | 32 | 178 | 58 | 207 | 9.41e-40 | 149 |
MsaG027332 | MtrunA17_Chr8g0350321 | 48.227 | 141 | 72 | 1 | 34 | 174 | 115 | 254 | 1.30e-39 | 149 |
MsaG027332 | MtrunA17_Chr3g0109391 | 60.902 | 133 | 31 | 2 | 214 | 346 | 587 | 698 | 1.94e-39 | 149 |
MsaG027332 | MtrunA17_Chr7g0246631 | 47.518 | 141 | 73 | 1 | 34 | 174 | 91 | 230 | 4.71e-39 | 148 |
MsaG027332 | MtrunA17_Chr7g0224481 | 50.000 | 144 | 60 | 2 | 34 | 177 | 15 | 146 | 2.87e-36 | 134 |
MsaG027332 | MtrunA17_Chr7g0224451 | 50.000 | 144 | 60 | 2 | 34 | 177 | 15 | 146 | 8.50e-36 | 135 |
MsaG027332 | MtrunA17_Chr6g0472471 | 46.763 | 139 | 73 | 1 | 38 | 176 | 73 | 210 | 3.02e-34 | 134 |
MsaG027332 | MtrunA17_Chr2g0331581 | 42.748 | 131 | 72 | 2 | 38 | 166 | 143 | 272 | 1.86e-26 | 111 |
MsaG027332 | MtrunA17_Chr5g0433301 | 47.328 | 131 | 46 | 2 | 216 | 346 | 582 | 689 | 1.25e-25 | 108 |
MsaG027332 | MtrunA17_Chr5g0394111 | 37.719 | 114 | 70 | 1 | 42 | 155 | 40 | 152 | 4.18e-19 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027332 | AT1G73360.1 | 56.329 | 158 | 68 | 1 | 34 | 191 | 32 | 188 | 1.34e-52 | 186 |
MsaG027332 | AT1G17920.2 | 52.667 | 150 | 69 | 2 | 37 | 185 | 24 | 172 | 3.91e-46 | 167 |
MsaG027332 | AT1G17920.1 | 52.667 | 150 | 69 | 2 | 37 | 185 | 24 | 172 | 3.91e-46 | 167 |
MsaG027332 | AT4G04890.2 | 46.328 | 177 | 90 | 4 | 33 | 205 | 61 | 236 | 1.04e-40 | 153 |
MsaG027332 | AT4G04890.1 | 46.328 | 177 | 90 | 4 | 33 | 205 | 61 | 236 | 1.04e-40 | 153 |
MsaG027332 | AT4G00730.2 | 51.493 | 134 | 64 | 1 | 34 | 167 | 134 | 266 | 1.64e-39 | 148 |
MsaG027332 | AT1G05230.12 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 1.79e-39 | 148 |
MsaG027332 | AT4G21750.2 | 50.000 | 140 | 69 | 1 | 33 | 172 | 61 | 199 | 1.91e-39 | 149 |
MsaG027332 | AT4G21750.1 | 50.000 | 140 | 69 | 1 | 33 | 172 | 61 | 199 | 1.91e-39 | 149 |
MsaG027332 | AT4G21750.3 | 50.000 | 140 | 69 | 1 | 33 | 172 | 61 | 199 | 1.91e-39 | 149 |
MsaG027332 | AT4G21750.4 | 50.000 | 140 | 69 | 1 | 33 | 172 | 61 | 199 | 1.91e-39 | 149 |
MsaG027332 | AT4G00730.1 | 51.493 | 134 | 64 | 1 | 34 | 167 | 134 | 266 | 3.04e-39 | 149 |
MsaG027332 | AT1G05230.8 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.4 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.9 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.10 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.7 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.11 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.2 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.6 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.5 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.1 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.67e-39 | 148 |
MsaG027332 | AT1G05230.3 | 45.000 | 200 | 92 | 4 | 2 | 199 | 47 | 230 | 3.78e-39 | 148 |
MsaG027332 | AT3G61150.1 | 49.265 | 136 | 68 | 1 | 34 | 169 | 110 | 244 | 2.69e-37 | 143 |
MsaG027332 | AT5G46880.3 | 46.939 | 147 | 75 | 2 | 33 | 179 | 110 | 253 | 3.05e-34 | 134 |
MsaG027332 | AT5G46880.1 | 46.939 | 147 | 75 | 2 | 33 | 179 | 110 | 253 | 3.05e-34 | 134 |
MsaG027332 | AT5G46880.2 | 46.939 | 147 | 75 | 2 | 33 | 179 | 110 | 253 | 3.05e-34 | 134 |
MsaG027332 | AT5G17320.1 | 47.020 | 151 | 78 | 2 | 28 | 177 | 20 | 169 | 1.08e-31 | 127 |
MsaG027332 | AT5G52170.3 | 41.860 | 172 | 91 | 4 | 2 | 170 | 27 | 192 | 1.38e-31 | 126 |
MsaG027332 | AT5G52170.1 | 41.860 | 172 | 91 | 4 | 2 | 170 | 27 | 192 | 1.38e-31 | 126 |
MsaG027332 | AT5G52170.2 | 41.860 | 172 | 91 | 4 | 2 | 170 | 27 | 192 | 1.55e-31 | 126 |
MsaG027332 | AT1G34650.1 | 40.845 | 142 | 84 | 0 | 39 | 180 | 20 | 161 | 2.30e-30 | 123 |
MsaG027332 | AT2G32370.1 | 41.714 | 175 | 95 | 4 | 28 | 198 | 62 | 233 | 8.22e-29 | 118 |
MsaG027332 | AT3G03260.2 | 42.748 | 131 | 74 | 1 | 36 | 165 | 24 | 154 | 3.18e-27 | 113 |
MsaG027332 | AT3G03260.1 | 42.748 | 131 | 74 | 1 | 36 | 165 | 24 | 154 | 3.25e-27 | 113 |
MsaG027332 | AT1G79840.1 | 41.718 | 163 | 73 | 5 | 32 | 192 | 99 | 241 | 3.12e-25 | 107 |
MsaG027332 | AT1G79840.5 | 41.718 | 163 | 73 | 5 | 32 | 192 | 99 | 241 | 3.32e-25 | 107 |
MsaG027332 | AT1G79840.3 | 41.718 | 163 | 73 | 5 | 32 | 192 | 41 | 183 | 3.54e-25 | 107 |
MsaG027332 | AT1G79840.6 | 41.718 | 163 | 73 | 5 | 32 | 192 | 41 | 183 | 3.54e-25 | 107 |
MsaG027332 | AT1G79840.4 | 41.718 | 163 | 73 | 5 | 32 | 192 | 99 | 241 | 3.90e-25 | 107 |
MsaG027332 | AT1G79840.2 | 41.718 | 163 | 73 | 5 | 32 | 192 | 128 | 270 | 5.32e-25 | 107 |
MsaG027332 | AT4G17710.1 | 43.511 | 131 | 61 | 2 | 33 | 163 | 87 | 204 | 1.10e-24 | 106 |
MsaG027332 | AT4G25530.1 | 32.231 | 121 | 80 | 1 | 37 | 155 | 40 | 160 | 1.68e-13 | 72.4 |
Find 91 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATGCAATTAGGGGAATT+TGG | 0.182664 | 5:+42672035 | MsaT027332.1:CDS |
CACCTGAGAAAATATGATTT+TGG | 0.206900 | 5:-42671872 | None:intergenic |
ACCAATTCAAATATCATCTT+TGG | 0.219702 | 5:+42671560 | MsaT027332.1:CDS |
GGTGCTTCGACAATGCAATT+AGG | 0.245347 | 5:+42672026 | MsaT027332.1:CDS |
ATGTTGCATGCGCAATATTC+TGG | 0.275832 | 5:+42671807 | MsaT027332.1:CDS |
GTGCTTCGACAATGCAATTA+GGG | 0.285038 | 5:+42672027 | MsaT027332.1:CDS |
GTTATGGTCAGATCAGATTT+TGG | 0.293590 | 5:+42669440 | MsaT027332.1:CDS |
CCACTACTTGGTAAACTTGA+TGG | 0.323390 | 5:-42671699 | None:intergenic |
CCGGGTTACACCACTTCATT+AGG | 0.330990 | 5:+42671996 | MsaT027332.1:CDS |
AAAGAATTAGCTTTGAGTTA+TGG | 0.345545 | 5:+42669424 | MsaT027332.1:CDS |
GTTGGAAATTCATTTGATAT+TGG | 0.350671 | 5:+42671615 | MsaT027332.1:CDS |
ACATCTTATCTTATCATTCT+CGG | 0.356227 | 5:-42670777 | None:intergenic |
GATCATTCTTGAATAGCATT+TGG | 0.373233 | 5:+42672198 | MsaT027332.1:intron |
TTACTTCTTTGAATCTCGTT+AGG | 0.387005 | 5:-42669205 | None:intergenic |
ACCTGAAGATATTCAAAAGA+TGG | 0.405470 | 5:+42672238 | MsaT027332.1:CDS |
TCATCTTTGGATTCAACAAT+GGG | 0.406650 | 5:+42671573 | MsaT027332.1:CDS |
GATTCAACAATGGGGAGTAT+TGG | 0.411860 | 5:+42671582 | MsaT027332.1:CDS |
TCCAAAGATGATATTTGAAT+TGG | 0.413568 | 5:-42671561 | None:intergenic |
AACAATTACCTCAACAATCA+TGG | 0.416923 | 5:+42671739 | MsaT027332.1:CDS |
TCATCGTTGCATTGCCCTAA+AGG | 0.424737 | 5:+42671657 | MsaT027332.1:CDS |
AAAGATGATATTTGAATTGG+TGG | 0.425517 | 5:-42671558 | None:intergenic |
TAGGGCAATGCAACGATGAA+TGG | 0.441470 | 5:-42671653 | None:intergenic |
GCAATATTCTGGACAAGATT+CGG | 0.442351 | 5:+42671818 | MsaT027332.1:CDS |
GATATTTGAATTGGTGGAAC+TGG | 0.454943 | 5:-42671552 | None:intergenic |
GAAAATTTAATCTGCCCCTC+TGG | 0.458560 | 5:+42670827 | MsaT027332.1:CDS |
GAGTTTCAGAGTGGAGGAAG+TGG | 0.463955 | 5:+42669130 | MsaT027332.1:CDS |
TCTACTCCCCACCACTGTCC+CGG | 0.468646 | 5:+42671977 | MsaT027332.1:CDS |
GAAATGATAACCGTTCACTA+AGG | 0.481739 | 5:+42670753 | MsaT027332.1:CDS |
GGACATCTAAATCAAAATGT+GGG | 0.484157 | 5:-42671851 | None:intergenic |
GTGTAACCCGGGACAGTGGT+GGG | 0.487177 | 5:-42671984 | None:intergenic |
TTGCATTGCCCTAAAGGAAA+AGG | 0.490303 | 5:+42671663 | MsaT027332.1:CDS |
GGGGAGTATTGGACAAGGAT+TGG | 0.490348 | 5:+42671593 | MsaT027332.1:CDS |
ATCAACAACGGACCACTACT+TGG | 0.491789 | 5:-42671711 | None:intergenic |
ATCATCTTTGGATTCAACAA+TGG | 0.498569 | 5:+42671572 | MsaT027332.1:CDS |
TGGACATCTAAATCAAAATG+TGG | 0.502102 | 5:-42671852 | None:intergenic |
GGTGTAACCCGGGACAGTGG+TGG | 0.512415 | 5:-42671985 | None:intergenic |
AGTATTGGACAAGGATTGGT+TGG | 0.518348 | 5:+42671597 | MsaT027332.1:CDS |
ACCACTTCATTAGGTGAGAC+CGG | 0.518859 | 5:+42672005 | MsaT027332.1:CDS |
CCTGAAGATATTCAAAAGAT+GGG | 0.518915 | 5:+42672239 | MsaT027332.1:CDS |
CCTAATGAAGTGGTGTAACC+CGG | 0.520984 | 5:-42671996 | None:intergenic |
CTACTCCCCACCACTGTCCC+GGG | 0.522171 | 5:+42671978 | MsaT027332.1:CDS |
ATCAAAATAACAATCACCAT+TGG | 0.530162 | 5:-42670864 | None:intergenic |
ATTAGGGGAATTTGGATTCG+AGG | 0.533461 | 5:+42672043 | MsaT027332.1:CDS |
AAATAACAATCACCATTGGT+TGG | 0.534518 | 5:-42670860 | None:intergenic |
ATGTGAGAATATATCTATGA+AGG | 0.534689 | 5:+42670796 | MsaT027332.1:CDS |
TGTAACCCGGGACAGTGGTG+GGG | 0.544537 | 5:-42671983 | None:intergenic |
AGTATGCAGGTCGATACCTT+TGG | 0.549314 | 5:+42671777 | MsaT027332.1:CDS |
ATTTGAATTGGTGGAACTGG+TGG | 0.550148 | 5:-42671549 | None:intergenic |
TAGAAGATCAGATGAATCGA+TGG | 0.554577 | 5:-42671928 | None:intergenic |
TAGAAGATCAGATGAATCGA+TGG | 0.554577 | 5:-42671958 | None:intergenic |
CATTCTCGGCCCTTAGTGAA+CGG | 0.554659 | 5:-42670763 | None:intergenic |
CTAATGGAGTTTCAGAGTGG+AGG | 0.557144 | 5:+42669124 | None:intergenic |
ACCTGCATACTTTGATACCT+CGG | 0.565962 | 5:-42671765 | None:intergenic |
TTAGGGGAATTTGGATTCGA+GGG | 0.567383 | 5:+42672044 | MsaT027332.1:CDS |
AGATCAGATGAATCGATGGT+GGG | 0.567478 | 5:-42671924 | None:intergenic |
AGATCAGATGAATCGATGGT+GGG | 0.567478 | 5:-42671954 | None:intergenic |
TCAAGCTGGTTCGGAGTGTG+AGG | 0.569323 | 5:-42669247 | None:intergenic |
GGTGGTTGTCCTCCAACCAA+TGG | 0.569844 | 5:+42670848 | MsaT027332.1:CDS |
TAATTGCATTGTCGAAGCAC+CGG | 0.570679 | 5:-42672024 | None:intergenic |
TAACAATCACCATTGGTTGG+AGG | 0.572616 | 5:-42670857 | None:intergenic |
TCCGAGGTATCAAAGTATGC+AGG | 0.573808 | 5:+42671764 | MsaT027332.1:CDS |
AATTTAATCTGCCCCTCTGG+TGG | 0.575675 | 5:+42670830 | MsaT027332.1:CDS |
GCTGGTTCGGAGTGTGAGGA+CGG | 0.580940 | 5:-42669243 | None:intergenic |
AAATGATAACCGTTCACTAA+GGG | 0.581718 | 5:+42670754 | MsaT027332.1:CDS |
AGCATTATATCTGAATACAC+TGG | 0.584252 | 5:+42671507 | MsaT027332.1:CDS |
GACATCTAAATCAAAATGTG+GGG | 0.585558 | 5:-42671850 | None:intergenic |
ACCGGTCTCACCTAATGAAG+TGG | 0.597496 | 5:-42672006 | None:intergenic |
AAGATCAGATGAATCGATGG+TGG | 0.602370 | 5:-42671925 | None:intergenic |
AAGATCAGATGAATCGATGG+TGG | 0.602370 | 5:-42671955 | None:intergenic |
GAAACTGGTACTTACTCCCA+CGG | 0.602394 | 5:-42672077 | None:intergenic |
TTTCAGAGTGGAGGAAGTGG+TGG | 0.608080 | 5:+42669133 | MsaT027332.1:CDS |
GATCAGATGAATCGATGGTG+GGG | 0.608527 | 5:-42671923 | None:intergenic |
GATCAGATGAATCGATGGTG+GGG | 0.608527 | 5:-42671953 | None:intergenic |
CCATCAAGTTTACCAAGTAG+TGG | 0.609404 | 5:+42671699 | MsaT027332.1:CDS |
AAATGCTCTACTCAAAGAAG+AGG | 0.616166 | 5:+42670907 | MsaT027332.1:CDS |
CTCGGAGTCCATGATTGTTG+AGG | 0.616580 | 5:-42671747 | None:intergenic |
GAACAAAAGGGTTCAGACGA+AGG | 0.619839 | 5:+42669468 | MsaT027332.1:CDS |
ATGCAACATTGTGTTGCCAA+AGG | 0.623905 | 5:-42671793 | None:intergenic |
TGAATCTCGTTAGGAGTGTG+AGG | 0.625793 | 5:-42669196 | None:intergenic |
AATTGTTCATTCATCAACAA+CGG | 0.631258 | 5:-42671723 | None:intergenic |
CTAATGAAGTGGTGTAACCC+GGG | 0.645481 | 5:-42671995 | None:intergenic |
GTTGGAGGACAACCACCAGA+GGG | 0.645567 | 5:-42670842 | None:intergenic |
GGTTGGAGGACAACCACCAG+AGG | 0.663143 | 5:-42670843 | None:intergenic |
TGCTTCGACAATGCAATTAG+GGG | 0.669628 | 5:+42672028 | MsaT027332.1:CDS |
AGACTAATGGAGTTTCAGAG+TGG | 0.672355 | 5:+42669121 | None:intergenic |
CTCAACAATCATGGACTCCG+AGG | 0.676275 | 5:+42671748 | MsaT027332.1:CDS |
ACATCTAAATCAAAATGTGG+GGG | 0.693255 | 5:-42671849 | None:intergenic |
ACAATGGGGAGTATTGGACA+AGG | 0.710979 | 5:+42671588 | MsaT027332.1:CDS |
AGTGGTGTAACCCGGGACAG+TGG | 0.726941 | 5:-42671988 | None:intergenic |
CATCTTTGGATTCAACAATG+GGG | 0.731611 | 5:+42671574 | MsaT027332.1:CDS |
TTGGAGGACAACCACCAGAG+GGG | 0.763822 | 5:-42670841 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 42669127 | 42672265 | 42669127 | ID=MsaG027332 |
Chr5 | mRNA | 42669127 | 42672265 | 42669127 | ID=MsaT027332.1;Parent=MsaG027332 |
Chr5 | exon | 42669127 | 42669281 | 42669127 | ID=MsaT027332.1.exon1;Parent=MsaT027332.1 |
Chr5 | CDS | 42669127 | 42669281 | 42669127 | ID=cds.MsaT027332.1;Parent=MsaT027332.1 |
Chr5 | exon | 42669372 | 42669489 | 42669372 | ID=MsaT027332.1.exon2;Parent=MsaT027332.1 |
Chr5 | CDS | 42669372 | 42669489 | 42669372 | ID=cds.MsaT027332.1;Parent=MsaT027332.1 |
Chr5 | exon | 42670740 | 42670928 | 42670740 | ID=MsaT027332.1.exon3;Parent=MsaT027332.1 |
Chr5 | CDS | 42670740 | 42670928 | 42670740 | ID=cds.MsaT027332.1;Parent=MsaT027332.1 |
Chr5 | exon | 42671492 | 42672084 | 42671492 | ID=MsaT027332.1.exon4;Parent=MsaT027332.1 |
Chr5 | CDS | 42671492 | 42672084 | 42671492 | ID=cds.MsaT027332.1;Parent=MsaT027332.1 |
Chr5 | exon | 42672199 | 42672265 | 42672199 | ID=MsaT027332.1.exon5;Parent=MsaT027332.1 |
Chr5 | CDS | 42672199 | 42672265 | 42672199 | ID=cds.MsaT027332.1;Parent=MsaT027332.1 |
Gene Sequence |
Protein sequence |