AlfalfaGEDB | MsaG027365

M. sativa ssp. caerulea / MsaG027365

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009987 GO:0010109 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0031323 GO:0034357 GO:0036211 GO:0042548 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043467 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027365	XP_003614423.1	98.435	575	7	1	1	573	1	575	0.0	1159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027365	sp\|Q9S713\|STT7_ARATH	83.107	515	87	0	59	573	48	562	0.0	905

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027365	tr\|G7JX40\|G7JX40_MEDTR	98.435	575	7	1	1	573	1	575	0.0	1159

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027365	MtrunA17_Chr5g0422461	98.435	575	7	1	1	573	1	575	0.0	1159
MsaG027365	MtrunA17_Chr7g0245041	39.086	394	199	9	104	463	86	472	7.97e-84	270
MsaG027365	MtrunA17_Chr8g0334531	41.546	414	195	9	105	479	104	509	9.04e-84	270
MsaG027365	MtrunA17_Chr4g0002001	30.374	214	109	7	264	464	118	304	2.13e-15	77.4
MsaG027365	MtrunA17_Chr1g0187371	27.830	212	111	6	267	464	126	309	6.17e-13	70.1
MsaG027365	MtrunA17_Chr7g0245081	37.069	116	58	3	372	484	1	104	4.77e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027365	AT1G68830.1	83.107	515	87	0	59	573	48	562	0.0	905
MsaG027365	AT5G01920.1	40.943	403	194	7	112	477	96	491	1.86e-87	280
MsaG027365	AT5G01920.2	40.943	403	194	7	112	477	96	491	1.86e-87	280
MsaG027365	AT2G38620.4	30.986	213	111	7	263	464	55	242	1.88e-15	77.0
MsaG027365	AT2G38620.2	27.566	341	178	14	149	464	8	304	2.51e-15	77.8

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Find 118 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGAAAAGCATTTGG+TGG	0.582619	5:+43449544	MsaT027365.1:CDS
AAAACTGTGGAGCCTCGATG+TGG	0.677269	5:+43448679	MsaT027365.1:CDS
AAAATCAGGAACAGAAAAGG+AGG	0.609977	5:+43448948	MsaT027365.1:CDS
AAAGAGGTGTGACTATGACT+TGG	0.672074	5:+43448645	MsaT027365.1:CDS
AAAGCATTTGGTGGAGGAGA+TGG	0.488211	5:+43449553	MsaT027365.1:CDS
AAATCAGGAACAGAAAAGGA+GGG	0.696429	5:+43448949	MsaT027365.1:CDS
AAGAGACTACCAACATTATA+TGG	0.329901	5:-43447113	None:intergenic
AAGCCATTCATGGTGGTGAA+TGG	0.493552	5:+43445301	MsaT027365.1:CDS
AAGCCTTCTTTGTCAAAGTA+AGG	0.405199	5:-43448826	None:intergenic
AAGTCTTTGGCCAAGGAAAA+TGG	0.232514	5:-43445217	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	43445150	43449593	43445150	ID=MsaG027365
Chr5	mRNA	43445150	43449593	43445150	ID=MsaT027365.1;Parent=MsaG027365
Chr5	exon	43445150	43445575	43445150	ID=MsaT027365.1.exon1;Parent=MsaT027365.1
Chr5	CDS	43445150	43445575	43445150	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43446326	43446412	43446326	ID=MsaT027365.1.exon2;Parent=MsaT027365.1
Chr5	CDS	43446326	43446412	43446326	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43446780	43446899	43446780	ID=MsaT027365.1.exon3;Parent=MsaT027365.1
Chr5	CDS	43446780	43446899	43446780	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43447023	43447121	43447023	ID=MsaT027365.1.exon4;Parent=MsaT027365.1
Chr5	CDS	43447023	43447121	43447023	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43447496	43447664	43447496	ID=MsaT027365.1.exon5;Parent=MsaT027365.1
Chr5	CDS	43447496	43447664	43447496	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43447758	43447851	43447758	ID=MsaT027365.1.exon6;Parent=MsaT027365.1
Chr5	CDS	43447758	43447851	43447758	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43448006	43448099	43448006	ID=MsaT027365.1.exon7;Parent=MsaT027365.1
Chr5	CDS	43448006	43448099	43448006	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43448202	43448258	43448202	ID=MsaT027365.1.exon8;Parent=MsaT027365.1
Chr5	CDS	43448202	43448258	43448202	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43448592	43449005	43448592	ID=MsaT027365.1.exon9;Parent=MsaT027365.1
Chr5	CDS	43448592	43449005	43448592	ID=cds.MsaT027365.1;Parent=MsaT027365.1
Chr5	exon	43449432	43449593	43449432	ID=MsaT027365.1.exon10;Parent=MsaT027365.1
Chr5	CDS	43449432	43449593	43449432	ID=cds.MsaT027365.1;Parent=MsaT027365.1

Gene Sequence

>MsaT027365.1

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCATCCCTACAACCCCAACAAAAAATCCATTTTCCTTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGGTGAATGGATTCTTGAATCAGCTCACAACCTTTTTGTAGGTGTTGGTGTTGGACTTCCATGCACTGTGATGGAGTGTGGAGATATGATCTATAGAAGCACTCTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGGAAGGATGATTTTGTTTTAGGGAAGAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAAAAGCCCTCATCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTTGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGAGGTTTGAAGGGGATGCTACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTCGAAACATTGATTCTTGGCGAGGTACAAGATTTGCCAAAGGGATTGGAAAGAGAAAATAAAATTATTCAAACAATCATAAGACAACTCTTGTTCGCATTAGACGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATTAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATTATGAGCACGCAAACTCCATCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCTCCAGTCTTATGGCAGTTGAATCTTCCTGACAGATTTGATATCTACAGTACTGGTCTAATATTCCTCCAAATGGCATTTCCTGGCTTACACTCTGATAATAGCCTTATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTGGAGCCTCGATGTGGCGCTGAACTTAGGAGAGGCTTTGAGCTGTTGGATTTAGATGGCGGAATAGGATGGGAACTTTTGACGTCAATGGTCCGATATAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCTATCATGCAAAATCTGAGGCTTAAGTTTTTTCGAGCAACACAACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTTATGGCAAAATCAGGAACAGAAAAGGAGGGTGGATTCACTGAAGCTCAACTACAGGAACTTAGAGAAATTGTGCCCAAGAAGAAGGCTGGTGCACAAAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAAAGGAAAATTATAAAAACTTTAAACGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA

Protein sequence

>MsaT027365.1

MATVATKGIGVTKLHPYNPNKKSIFLGQRLRIKPSNNEPPPPCSARFITTKAIHGGEWILESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVETLILGEVQDLPKGLERENKIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLHSDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYGEAAKWIIQLMAKSGTEKEGGFTEAQLQELREIVPKKKAGAQRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE*