AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027367


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027367 MtrunA17_Chr5g0422421 92.444 225 17 0 1 225 1 225 5.26e-157 434
MsaG027367 MtrunA17_Chr2g0317451 73.077 234 63 0 1 234 1 234 3.40e-125 354
MsaG027367 MtrunA17_Chr2g0317481 73.077 234 63 0 1 234 1 234 1.29e-124 353
MsaG027367 MtrunA17_Chr5g0419601 75.983 229 55 0 1 229 1 229 8.90e-124 350
MsaG027367 MtrunA17_Chr5g0422941 72.650 234 64 0 1 234 1 234 9.61e-124 350
MsaG027367 MtrunA17_Chr8g0355091 66.094 233 79 0 1 233 1 233 3.24e-112 321
MsaG027367 MtrunA17_Chr1g0187361 68.889 225 70 0 1 225 1 225 5.56e-110 316
MsaG027367 MtrunA17_Chr1g0188671 66.667 225 75 0 1 225 39 263 7.53e-106 306
MsaG027367 MtrunA17_Chr1g0206701 63.556 225 82 0 1 225 1 225 7.35e-104 300
MsaG027367 MtrunA17_Chr1g0206721 66.216 222 75 0 1 222 1 222 2.69e-102 296
MsaG027367 MtrunA17_Chr2g0292791 65.315 222 77 0 1 222 1 222 1.20e-101 295
MsaG027367 MtrunA17_Chr1g0149391 64.865 222 78 0 1 222 1 222 1.61e-97 284
MsaG027367 MtrunA17_Chr2g0300441 59.657 233 93 1 1 233 1 232 3.61e-95 278
MsaG027367 MtrunA17_Chr3g0089141 61.277 235 73 3 1 225 1 227 8.79e-95 277
MsaG027367 MtrunA17_Chr1g0208561 61.277 235 73 3 1 225 1 227 1.87e-94 276
MsaG027367 MtrunA17_Chr3g0099421 62.100 219 83 0 1 219 26 244 3.37e-94 276
MsaG027367 MtrunA17_Chr2g0325971 61.702 235 72 3 1 225 1 227 2.69e-93 273
MsaG027367 MtrunA17_Chr1g0206691 59.361 219 89 0 18 236 1 219 5.28e-92 270
MsaG027367 MtrunA17_Chr1g0208581 57.447 235 82 3 1 225 1 227 8.48e-86 254
MsaG027367 MtrunA17_Chr3g0099411 58.904 219 71 2 1 219 1 200 6.68e-83 246
MsaG027367 MtrunA17_Chr1g0206991 64.835 182 64 0 1 182 1 182 3.36e-80 238
MsaG027367 MtrunA17_Chr7g0238991 55.814 215 94 1 19 233 31 244 1.53e-79 239
MsaG027367 MtrunA17_Chr3g0085241 46.032 189 92 1 3 191 35 213 8.13e-54 173
MsaG027367 MtrunA17_Chr3g0119901 44.724 199 106 1 1 195 1 199 3.91e-53 170
MsaG027367 MtrunA17_Chr2g0300421 53.892 167 66 1 1 167 1 156 7.70e-51 163
MsaG027367 MtrunA17_Chr3g0089151 61.290 124 48 0 1 124 1 124 6.70e-48 154
MsaG027367 MtrunA17_Chr3g0111931 62.963 108 40 0 21 128 2 109 7.15e-41 135
MsaG027367 MtrunA17_Chr1g0187351 80.303 66 13 0 18 83 1 66 3.76e-34 117
MsaG027367 MtrunA17_Chr8g0379021 37.423 163 98 2 5 167 8 166 4.22e-30 110
MsaG027367 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 8.01e-30 106
MsaG027367 MtrunA17_Chr2g0333981 35.503 169 103 2 5 172 8 171 2.34e-29 108
MsaG027367 MtrunA17_Chr4g0018951 39.355 155 82 2 5 159 8 150 1.48e-28 106
MsaG027367 MtrunA17_Chr8g0357771 42.308 130 63 3 9 127 2 130 1.69e-24 95.9
MsaG027367 MtrunA17_Chr3g0111831 70.312 64 19 0 16 79 11 74 3.89e-24 92.0
MsaG027367 MtrunA17_Chr1g0169761 56.338 71 31 0 9 79 2 72 5.32e-24 94.7
MsaG027367 MtrunA17_Chr8g0376821 56.338 71 31 0 9 79 2 72 8.61e-24 94.0
MsaG027367 MtrunA17_Chr4g0071601 35.359 181 103 4 5 175 8 184 5.89e-23 92.0
MsaG027367 MtrunA17_Chr1g0180591 43.396 106 56 2 9 111 2 106 1.20e-22 90.9
MsaG027367 MtrunA17_Chr1g0175601 55.072 69 31 0 9 77 2 70 2.67e-22 90.1
MsaG027367 MtrunA17_Chr4g0074101 52.113 71 34 0 9 79 2 72 4.38e-22 90.1
MsaG027367 MtrunA17_Chr1g0175611 55.072 69 31 0 9 77 2 70 8.70e-22 88.6
MsaG027367 MtrunA17_Chr8g0356071 49.351 77 39 0 9 85 2 78 3.54e-21 86.7
MsaG027367 MtrunA17_Chr4g0052061 36.667 150 78 5 9 158 2 134 6.82e-20 83.2
MsaG027367 MtrunA17_Chr4g0052081 53.623 69 32 0 9 77 2 70 2.36e-18 79.7
MsaG027367 MtrunA17_Chr4g0049901 43.689 103 50 4 10 104 29 131 3.98e-17 77.8
MsaG027367 MtrunA17_Chr4g0020221 43.564 101 42 2 9 94 2 102 3.99e-17 78.2
MsaG027367 MtrunA17_Chr3g0093131 34.483 145 74 5 26 159 36 170 4.04e-17 76.6
MsaG027367 MtrunA17_Chr5g0427401 48.529 68 35 0 9 76 2 69 1.09e-16 76.3
MsaG027367 MtrunA17_Chr3g0077501 50.000 68 34 0 9 76 2 69 1.13e-16 76.3
MsaG027367 MtrunA17_Chr8g0345001 33.987 153 98 2 8 159 17 167 1.74e-16 74.7
MsaG027367 MtrunA17_Chr8g0351041 50.725 69 34 0 10 78 3 71 2.84e-16 73.6
MsaG027367 MtrunA17_Chr8g0351051 49.367 79 39 1 9 86 2 80 2.99e-16 75.5
MsaG027367 MtrunA17_Chr3g0097101 45.946 74 40 0 3 76 11 84 3.21e-16 75.5
MsaG027367 MtrunA17_Chr4g0057151 49.296 71 36 0 10 80 3 73 3.76e-16 74.3
MsaG027367 MtrunA17_Chr7g0246431 53.731 67 31 0 10 76 3 69 4.43e-16 74.3
MsaG027367 MtrunA17_Chr8g0351031 31.868 182 95 4 10 173 3 173 6.84e-16 73.9
MsaG027367 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 8.98e-16 73.9
MsaG027367 MtrunA17_Chr4g0061691 31.977 172 91 6 9 175 2 152 1.24e-15 73.6
MsaG027367 MtrunA17_Chr4g0049541 48.529 68 35 0 9 76 2 69 1.32e-15 73.2
MsaG027367 MtrunA17_Chr8g0380021 48.529 68 35 0 9 76 18 85 2.67e-15 72.8
MsaG027367 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 3.88e-15 72.4
MsaG027367 MtrunA17_Chr5g0412271 47.059 68 36 0 9 76 2 69 5.10e-15 71.6
MsaG027367 MtrunA17_Chr5g0412461 47.059 68 36 0 9 76 2 69 6.60e-15 71.2
MsaG027367 MtrunA17_Chr2g0284911 48.529 68 35 0 9 76 17 84 8.27e-15 71.6
MsaG027367 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 1.26e-14 70.1
MsaG027367 MtrunA17_Chr7g0220121 46.377 69 36 1 9 76 2 70 1.28e-14 71.2
MsaG027367 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 4.11e-14 69.7
MsaG027367 MtrunA17_Chr5g0427921 50.877 57 28 0 9 65 2 58 4.29e-14 65.1
MsaG027367 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 6.37e-14 68.9
MsaG027367 MtrunA17_Chr1g0173161 50.000 64 32 0 9 72 2 65 6.59e-14 65.1
MsaG027367 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 7.92e-14 68.9
MsaG027367 MtrunA17_Chr5g0420081 26.984 252 128 9 9 236 2 221 1.06e-13 68.2
MsaG027367 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 1.54e-13 67.4
MsaG027367 MtrunA17_Chr1g0159661 44.286 70 37 1 9 76 2 71 1.94e-13 66.6
MsaG027367 MtrunA17_Chr8g0366231 44.928 69 37 1 9 76 2 70 2.34e-13 67.4
MsaG027367 MtrunA17_Chr1g0164791 45.714 70 36 1 9 76 2 71 3.80e-13 66.6
MsaG027367 MtrunA17_Chr3g0134451 46.479 71 37 1 9 78 2 72 4.07e-13 67.4
MsaG027367 MtrunA17_Chr7g0246381 48.485 66 29 1 9 69 2 67 4.10e-13 62.8
MsaG027367 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 4.10e-13 66.2
MsaG027367 MtrunA17_Chr5g0404951 47.143 70 35 1 9 76 2 71 4.96e-13 66.2
MsaG027367 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.03e-12 62.4
MsaG027367 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 1.17e-12 64.3
MsaG027367 MtrunA17_Chr2g0308251 43.662 71 39 1 9 78 2 72 1.85e-12 61.2
MsaG027367 MtrunA17_Chr5g0425191 49.231 65 33 0 9 73 2 66 3.20e-12 61.2
MsaG027367 MtrunA17_Chr3g0122251 44.928 69 37 1 9 76 2 70 3.67e-12 63.9
MsaG027367 MtrunA17_Chr4g0044071 50.877 57 28 0 9 65 2 58 7.80e-12 60.5
MsaG027367 MtrunA17_Chr3g0142191 26.818 220 134 7 9 226 2 196 7.86e-12 62.8
MsaG027367 MtrunA17_Chr4g0025531 29.851 201 109 6 1 185 1 185 1.29e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027367 AT5G60440.1 52.695 167 76 2 5 168 3 169 2.17e-53 174
MsaG027367 AT2G24840.1 48.447 161 72 3 9 163 63 218 1.95e-42 145
MsaG027367 AT1G01530.1 45.963 161 82 4 4 162 2 159 2.80e-37 131
MsaG027367 AT1G65360.1 39.474 228 121 6 5 225 3 220 2.93e-37 130
MsaG027367 AT4G36590.1 45.732 164 79 4 5 160 3 164 5.08e-36 128
MsaG027367 AT3G04100.1 34.356 163 101 4 2 159 7 168 8.63e-24 95.1
MsaG027367 AT2G34440.1 36.486 148 92 2 9 156 2 147 6.26e-23 92.0
MsaG027367 AT3G66656.1 40.336 119 67 1 9 123 2 120 9.77e-22 89.0
MsaG027367 AT1G72350.1 34.211 152 67 2 9 160 43 161 2.05e-21 89.4
MsaG027367 AT2G45660.2 55.882 68 30 0 10 77 3 70 2.52e-18 79.3
MsaG027367 AT2G45660.1 55.882 68 30 0 10 77 3 70 6.01e-18 79.7
MsaG027367 AT4G22950.2 53.731 67 31 0 10 76 3 69 7.74e-18 78.6
MsaG027367 AT4G22950.3 53.731 67 31 0 10 76 3 69 2.28e-17 78.2
MsaG027367 AT4G22950.1 53.731 67 31 0 10 76 3 69 2.28e-17 78.2
MsaG027367 AT5G51870.5 54.167 72 33 0 5 76 21 92 2.43e-17 77.8
MsaG027367 AT1G28460.1 30.058 173 111 4 5 170 4 173 2.74e-17 77.4
MsaG027367 AT4G37940.1 54.412 68 31 0 9 76 2 69 3.08e-17 78.2
MsaG027367 AT4G37940.4 54.412 68 31 0 9 76 2 69 3.25e-17 77.8
MsaG027367 AT2G45650.1 29.412 221 116 6 9 208 2 203 3.80e-17 78.6
MsaG027367 AT4G37940.3 54.412 68 31 0 9 76 2 69 3.88e-17 76.6
MsaG027367 AT5G51870.1 55.224 67 30 0 10 76 3 69 8.49e-17 76.6
MsaG027367 AT2G22540.3 31.481 162 93 4 9 169 2 146 8.57e-17 77.0
MsaG027367 AT2G22540.1 31.481 162 93 4 9 169 2 146 8.57e-17 77.0
MsaG027367 AT5G51870.2 55.224 67 30 0 10 76 3 69 1.01e-16 75.5
MsaG027367 AT5G51870.3 52.703 74 33 1 3 76 8 79 1.10e-16 76.6
MsaG027367 AT3G57230.2 50.000 68 34 0 9 76 2 69 1.30e-16 74.7
MsaG027367 AT5G51870.4 55.224 67 30 0 10 76 3 69 1.55e-16 76.3
MsaG027367 AT3G57390.3 52.941 68 32 0 9 76 2 69 3.66e-16 75.1
MsaG027367 AT4G09960.2 48.529 68 35 0 9 76 2 69 3.97e-16 75.1
MsaG027367 AT3G57230.1 50.000 68 34 0 9 76 2 69 4.01e-16 75.5
MsaG027367 AT3G57230.4 50.000 68 34 0 9 76 2 69 4.01e-16 75.5
MsaG027367 AT4G09960.1 48.529 68 35 0 9 76 2 69 4.12e-16 75.1
MsaG027367 AT1G29962.1 30.061 163 105 4 5 161 4 163 4.18e-16 74.3
MsaG027367 AT5G13790.1 52.941 68 32 0 9 76 2 69 4.23e-16 75.9
MsaG027367 AT4G09960.6 48.529 68 35 0 9 76 3 70 4.45e-16 75.1
MsaG027367 AT5G13790.2 52.941 68 32 0 9 76 2 69 4.76e-16 75.5
MsaG027367 AT5G10140.4 50.725 69 33 1 9 76 2 70 4.79e-16 73.9
MsaG027367 AT5G10140.2 50.725 69 33 1 9 76 2 70 4.83e-16 73.6
MsaG027367 AT5G10140.1 50.725 69 33 1 9 76 2 70 5.85e-16 73.9
MsaG027367 AT4G09960.5 48.529 68 35 0 9 76 12 79 6.20e-16 74.7
MsaG027367 AT2G22630.1 51.471 68 33 0 9 76 2 69 6.27e-16 74.7
MsaG027367 AT2G22630.2 51.471 68 33 0 9 76 2 69 6.27e-16 74.7
MsaG027367 AT5G62165.17 50.746 67 33 0 10 76 3 69 6.73e-16 72.8
MsaG027367 AT5G62165.12 50.746 67 33 0 10 76 3 69 6.73e-16 72.8
MsaG027367 AT5G62165.11 50.746 67 33 0 10 76 3 69 6.73e-16 72.8
MsaG027367 AT5G62165.14 50.746 67 33 0 10 76 3 69 7.09e-16 71.6
MsaG027367 AT3G57390.1 52.941 68 32 0 9 76 2 69 7.77e-16 74.7
MsaG027367 AT4G09960.3 48.529 68 35 0 9 76 28 95 8.26e-16 74.7
MsaG027367 AT5G62165.6 50.746 67 33 0 10 76 3 69 9.13e-16 72.4
MsaG027367 AT5G62165.9 50.746 67 33 0 10 76 3 69 9.13e-16 72.4
MsaG027367 AT5G62165.7 50.746 67 33 0 10 76 3 69 9.13e-16 72.4
MsaG027367 AT5G62165.8 50.746 67 33 0 10 76 3 69 9.13e-16 72.4
MsaG027367 AT5G62165.13 50.746 67 33 0 10 76 3 69 9.13e-16 72.4
MsaG027367 AT3G54340.1 31.847 157 74 4 9 133 2 157 1.15e-15 73.9
MsaG027367 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.19e-15 73.2
MsaG027367 AT5G62165.10 50.746 67 33 0 10 76 3 69 1.37e-15 73.2
MsaG027367 AT5G62165.4 50.746 67 33 0 10 76 3 69 1.37e-15 73.2
MsaG027367 AT4G18960.1 41.748 103 48 2 2 103 11 102 1.43e-15 73.9
MsaG027367 AT5G62165.3 50.746 67 33 0 10 76 3 69 1.48e-15 73.2
MsaG027367 AT5G62165.1 50.746 67 33 0 10 76 3 69 1.48e-15 73.2
MsaG027367 AT5G62165.2 50.746 67 33 0 10 76 3 69 1.48e-15 73.2
MsaG027367 AT4G24540.1 50.000 68 34 0 9 76 2 69 1.60e-15 73.2
MsaG027367 AT4G09960.4 48.529 68 35 0 9 76 97 164 1.68e-15 74.7
MsaG027367 AT5G51860.2 52.239 67 32 0 10 76 3 69 2.94e-15 72.4
MsaG027367 AT5G65070.5 32.979 188 99 8 9 173 2 185 3.48e-15 72.4
MsaG027367 AT1G17310.1 32.487 197 89 6 8 198 47 205 3.72e-15 72.4
MsaG027367 AT5G51860.1 52.239 67 32 0 10 76 3 69 4.08e-15 72.0
MsaG027367 AT2G42830.2 48.529 68 35 0 9 76 17 84 4.27e-15 72.8
MsaG027367 AT2G42830.1 48.529 68 35 0 9 76 17 84 4.28e-15 72.8
MsaG027367 AT1G17310.2 32.487 197 89 6 8 198 58 216 4.29e-15 72.4
MsaG027367 AT3G61120.1 51.471 68 33 0 9 76 2 69 4.29e-15 72.8
MsaG027367 AT3G58780.1 47.887 71 37 0 6 76 14 84 4.81e-15 72.4
MsaG027367 AT3G58780.5 47.887 71 37 0 6 76 20 90 5.05e-15 72.4
MsaG027367 AT4G11880.2 52.941 68 31 1 10 76 3 70 8.02e-15 70.5
MsaG027367 AT4G11880.3 52.941 68 31 1 10 76 3 70 8.02e-15 70.5
MsaG027367 AT4G11880.4 52.941 68 31 1 10 76 3 70 1.22e-14 70.9
MsaG027367 AT4G11880.1 52.941 68 31 1 10 76 3 70 1.22e-14 70.9
MsaG027367 AT3G58780.4 47.887 71 37 0 6 76 14 84 1.31e-14 71.6
MsaG027367 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.32e-14 71.2
MsaG027367 AT5G23260.1 46.667 75 38 1 5 77 14 88 1.64e-14 71.2
MsaG027367 AT5G23260.4 46.667 75 38 1 5 77 14 88 1.74e-14 71.2
MsaG027367 AT2G14210.1 47.826 69 35 1 9 76 2 70 2.55e-14 70.5
MsaG027367 AT5G65070.2 33.000 200 115 8 9 196 2 194 2.78e-14 70.1
MsaG027367 AT1G77950.3 46.479 71 37 1 9 78 2 72 3.01e-14 70.5
MsaG027367 AT1G77950.2 46.479 71 37 1 9 78 2 72 3.01e-14 70.5
MsaG027367 AT1G77950.1 46.479 71 37 1 9 78 2 72 3.01e-14 70.5
MsaG027367 AT1G77950.4 46.479 71 37 1 9 78 2 72 3.01e-14 70.5
MsaG027367 AT2G14210.2 47.826 69 35 1 9 76 2 70 3.19e-14 70.1
MsaG027367 AT2G22540.2 30.864 162 89 5 9 169 2 141 3.75e-14 69.7
MsaG027367 AT5G23260.2 47.887 71 35 1 9 77 2 72 4.72e-14 69.7
MsaG027367 AT5G23260.3 47.887 71 35 1 9 77 2 72 4.91e-14 69.7
MsaG027367 AT1G77980.1 47.887 71 36 1 9 78 2 72 5.29e-14 70.5
MsaG027367 AT5G65050.2 46.377 69 36 1 9 76 2 70 5.73e-14 68.2
MsaG027367 AT5G65070.1 43.750 80 41 2 9 87 2 78 6.79e-14 68.6
MsaG027367 AT5G65070.4 33.533 167 77 6 9 171 2 138 6.98e-14 67.4
MsaG027367 AT5G65050.3 46.377 69 36 1 9 76 2 70 1.09e-13 67.8
MsaG027367 AT5G65050.1 46.377 69 36 1 9 76 2 70 1.11e-13 67.4
MsaG027367 AT5G65050.5 46.377 69 36 1 9 76 2 70 1.20e-13 67.4
MsaG027367 AT1G22130.1 36.290 124 75 3 9 130 2 123 1.25e-13 69.7
MsaG027367 AT1G47760.1 41.791 67 39 0 9 75 2 68 1.58e-13 67.0
MsaG027367 AT5G60910.1 46.377 69 36 1 9 76 2 70 1.65e-13 68.2
MsaG027367 AT5G15800.1 49.275 69 34 1 9 76 2 70 1.80e-13 68.2
MsaG027367 AT1G26310.1 46.377 69 36 1 9 76 2 70 1.89e-13 68.2
MsaG027367 AT5G15800.2 49.275 69 34 1 9 76 2 70 3.15e-13 67.8
MsaG027367 AT5G20240.2 45.714 70 36 1 9 76 2 71 3.85e-13 65.5
MsaG027367 AT5G65060.1 46.377 69 36 1 9 76 2 70 3.96e-13 66.2
MsaG027367 AT5G65060.2 46.377 69 36 1 9 76 2 70 4.14e-13 66.2
MsaG027367 AT5G20240.1 45.714 70 36 1 9 76 2 71 4.90e-13 66.2
MsaG027367 AT1G69120.2 43.478 69 38 1 9 76 2 70 4.92e-13 66.6
MsaG027367 AT5G65060.3 46.377 69 36 1 9 76 2 70 5.24e-13 65.9
MsaG027367 AT1G69120.1 43.478 69 38 1 9 76 2 70 1.02e-12 66.2
MsaG027367 AT4G37435.1 39.773 88 48 2 9 91 2 89 1.05e-12 65.1
MsaG027367 AT3G58780.2 49.180 61 31 0 6 66 14 74 1.66e-12 65.5
MsaG027367 AT5G65070.3 50.877 57 28 0 9 65 2 58 2.50e-12 64.7
MsaG027367 AT2G03710.3 51.786 56 27 0 9 64 2 57 2.54e-12 63.9
MsaG027367 AT1G28450.1 40.541 74 44 0 5 78 4 77 2.61e-12 63.9
MsaG027367 AT3G58780.3 49.180 61 31 0 6 66 14 74 2.65e-12 65.1
MsaG027367 AT1G71692.1 44.286 70 38 1 9 77 2 71 3.33e-12 63.9
MsaG027367 AT1G24260.3 46.377 69 36 1 9 76 2 70 3.37e-12 64.3
MsaG027367 AT1G24260.1 46.377 69 36 1 9 76 2 70 3.39e-12 64.7
MsaG027367 AT1G24260.2 46.377 69 36 1 9 76 2 70 3.57e-12 64.7
MsaG027367 AT3G02310.2 44.928 69 37 1 9 76 2 70 3.64e-12 63.9
MsaG027367 AT2G03710.2 51.786 56 27 0 9 64 2 57 6.44e-12 63.9
MsaG027367 AT3G02310.1 44.928 69 37 1 9 76 2 70 6.55e-12 63.9
MsaG027367 AT2G03710.1 45.714 70 36 2 9 76 2 71 6.76e-12 63.9
MsaG027367 AT5G65080.3 41.772 79 42 2 9 86 9 84 1.54e-11 62.0
MsaG027367 AT5G65080.2 50.000 54 27 0 9 62 9 62 3.54e-11 61.2
MsaG027367 AT5G49420.1 39.744 78 43 1 5 78 3 80 4.17e-11 62.4
MsaG027367 AT5G49490.1 35.238 105 61 3 5 103 41 144 4.64e-11 61.6

Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGACTATTTCAACATT+TGG 0.272727 5:+43468336 None:intergenic
TTTGTTTGGCTTCAACAATA+TGG 0.287971 5:-43467881 MsaT027367.1:CDS
AGAAGAATCAAGCTCAGTTT+TGG 0.347534 5:-43468152 MsaT027367.1:CDS
CTATGACTATTTCAACATTT+GGG 0.358955 5:+43468337 None:intergenic
ATTGAATCTTCTTGAGGATC+TGG 0.388433 5:+43467946 None:intergenic
TGGTGGAATTGTCCTATTGA+TGG 0.405545 5:-43468132 MsaT027367.1:CDS
ATGTTGCAACCACATTTGTT+TGG 0.408052 5:-43467895 MsaT027367.1:CDS
ATGACATCATGAAAATCATT+CGG 0.408528 5:-43468281 MsaT027367.1:CDS
TTGTTTGGCTTCAACAATAT+GGG 0.410403 5:-43467880 MsaT027367.1:CDS
AGTGAGCTTTGCACTCTTTG+TGG 0.435768 5:-43468417 MsaT027367.1:CDS
GCTTCGAGAAAGTCACTTGT+AGG 0.449108 5:+43468466 None:intergenic
TCCTATTGATGGGATGGATA+TGG 0.452820 5:-43468121 MsaT027367.1:CDS
TGACATCATGAAAATCATTC+GGG 0.467021 5:-43468280 MsaT027367.1:CDS
TGAATCATTCAAGAAGGCTC+TGG 0.478190 5:-43468091 MsaT027367.1:CDS
AACAAATGTGGTTGCAACAT+AGG 0.478237 5:+43467898 None:intergenic
CCTTCTTGAATGATTCAAGT+TGG 0.496013 5:+43468097 None:intergenic
GGGTTCTGAAGAAATTCTGC+TGG 0.496408 5:+43467919 None:intergenic
AATCTTCTTGAGGATCTGGC+TGG 0.497439 5:+43467950 None:intergenic
ACCATATCCATCCCATCAAT+AGG 0.499417 5:+43468120 None:intergenic
TATCTTCTCACCTAGTGAAA+AGG 0.506975 5:-43468376 MsaT027367.1:CDS
GGTGGAATTGTCCTATTGAT+GGG 0.509530 5:-43468131 MsaT027367.1:CDS
TGTTGCGCAACATGCTGATA+AGG 0.512704 5:-43468052 MsaT027367.1:CDS
ACAAATGTGGTTGCAACATA+GGG 0.521813 5:+43467899 None:intergenic
GCTGGCTCAGTTCATTCCCA+CGG 0.531199 5:+43468181 None:intergenic
TGATGTATTGACTCATATCA+AGG 0.531389 5:-43468226 MsaT027367.1:CDS
GGAAAGATTGAATCTTCTTG+AGG 0.536124 5:+43467940 None:intergenic
GATTAGATCAAGAAATCTCA+TGG 0.544174 5:+43467836 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5:-43468455 MsaT027367.1:CDS
ATGGGAGGACAAGGTGGACA+TGG 0.555996 5:-43467862 MsaT027367.1:CDS
GCTCGGACACAATGGTGTTA+CGG 0.556895 5:+43468253 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5:-43468456 MsaT027367.1:CDS
GAATTGTCCTATTGATGGGA+TGG 0.578595 5:-43468127 MsaT027367.1:CDS
ATTAGATCAAGAAATCTCAT+GGG 0.584240 5:+43467837 None:intergenic
TGGGAATGAACTGAGCCAGC+CGG 0.588710 5:-43468178 MsaT027367.1:CDS
AGTCAATACATCATTGAGCT+CGG 0.593521 5:+43468236 None:intergenic
AACAATATGGGAGGACAAGG+TGG 0.597364 5:-43467868 MsaT027367.1:CDS
CCAACTTGAATCATTCAAGA+AGG 0.607259 5:-43468097 MsaT027367.1:CDS
TTCAACAATATGGGAGGACA+AGG 0.607830 5:-43467871 MsaT027367.1:CDS
ATCATTCAAGAAGGCTCTGG+AGG 0.608190 5:-43468088 MsaT027367.1:CDS
GCTGATAAGGTTGAAATGCA+AGG 0.616187 5:-43468039 MsaT027367.1:CDS
TTTGGCTTCAACAATATGGG+AGG 0.620361 5:-43467877 MsaT027367.1:CDS
ATCATTGAGCTCGGACACAA+TGG 0.621229 5:+43468245 None:intergenic
GGATCTGGCTGGTTCTCAAG+AGG 0.622631 5:+43467961 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5:+43468442 None:intergenic
GCGGAAAGAAAACTCGAGGT+CGG 0.635901 5:-43468527 MsaT027367.1:CDS
CATAGATCGTTATCTCTCTG+AGG 0.659651 5:-43468319 MsaT027367.1:CDS
TAGACATCGAAAAGAACCGT+GGG 0.671283 5:-43468197 MsaT027367.1:CDS
TCGAGCGGAAAGAAAACTCG+AGG 0.680063 5:-43468531 MsaT027367.1:CDS
TTGTTGAAGCCAAACAAATG+TGG 0.689285 5:+43467886 None:intergenic
TTAGATCAAGAAATCTCATG+GGG 0.707559 5:+43467838 None:intergenic
TGTGCTTCAGCCATGTCGAG+CGG 0.709182 5:-43468546 None:intergenic
CTAGACATCGAAAAGAACCG+TGG 0.721163 5:-43468198 MsaT027367.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 43467843 43468556 43467843 ID=MsaG027367
Chr5 mRNA 43467843 43468556 43467843 ID=MsaT027367.1;Parent=MsaG027367
Chr5 exon 43467843 43468556 43467843 ID=MsaT027367.1.exon1;Parent=MsaT027367.1
Chr5 CDS 43467843 43468556 43467843 ID=cds.MsaT027367.1;Parent=MsaT027367.1
Gene Sequence

>MsaT027367.1

ATGTCGAGCGGAAAGAAAACTCGAGGTCGGCAAAAGATTGAGATGAAAAACATGAGCGATGAAAGCAGCCTACAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGGTGCATATGTTGCTCTAATTATCTTCTCACCTAGTGAAAAGGTATTTTCATTTGGTCACCCAAATGTTGAAATAGTCATAGATCGTTATCTCTCTGAGGTCCTACCCCAAAATGATGACATCATGAAAATCATTCGGGATGACCGTAACACCATTGTGTCCGAGCTCAATGATGTATTGACTCATATCAAGGATGAACTAGACATCGAAAAGAACCGTGGGAATGAACTGAGCCAGCCGGAAAAGAAGAATCAAGCTCAGTTTTGGTGGAATTGTCCTATTGATGGGATGGATATGGTCCAACTTGAATCATTCAAGAAGGCTCTGGAGGATCTTAAGAAACTTGTTGCGCAACATGCTGATAAGGTTGAAATGCAAGGTACTTCTACCCAACCCCTTCAAGTTTTTGAAGGAAATGGTTCATCATCTAACATGCCTCTTGAGAACCAGCCAGATCCTCAAGAAGATTCAATCTTTCCAGCAGAATTTCTTCAGAACCCTATGTTGCAACCACATTTGTTTGGCTTCAACAATATGGGAGGACAAGGTGGACATGGTCCCCATGAGATTTCTTGA

Protein sequence

>MsaT027367.1

MSSGKKTRGRQKIEMKNMSDESSLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVEIVIDRYLSEVLPQNDDIMKIIRDDRNTIVSELNDVLTHIKDELDIEKNRGNELSQPEKKNQAQFWWNCPIDGMDMVQLESFKKALEDLKKLVAQHADKVEMQGTSTQPLQVFEGNGSSSNMPLENQPDPQEDSIFPAEFLQNPMLQPHLFGFNNMGGQGGHGPHEIS*