AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027458

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027458 MtrunA17_Chr5g0422941 86.076 237 32 1 1 236 1 237 6.23e-151 419
MsaG027458 MtrunA17_Chr2g0317451 79.661 236 47 1 1 235 1 236 4.14e-138 387
MsaG027458 MtrunA17_Chr2g0317481 79.661 236 47 1 1 235 1 236 1.58e-137 385
MsaG027458 MtrunA17_Chr5g0419601 74.667 225 57 0 1 225 1 225 1.52e-119 340
MsaG027458 MtrunA17_Chr5g0422421 74.667 225 57 0 1 225 1 225 1.52e-119 340
MsaG027458 MtrunA17_Chr1g0188671 71.111 225 65 0 1 225 39 263 8.43e-113 324
MsaG027458 MtrunA17_Chr1g0187361 69.778 225 68 0 1 225 1 225 4.18e-111 318
MsaG027458 MtrunA17_Chr8g0355091 63.713 237 85 1 1 236 1 237 2.35e-109 314
MsaG027458 MtrunA17_Chr1g0206721 66.667 219 73 0 1 219 1 219 5.83e-107 308
MsaG027458 MtrunA17_Chr2g0292791 63.927 219 79 0 1 219 1 219 1.29e-102 297
MsaG027458 MtrunA17_Chr1g0149391 64.384 219 78 0 1 219 1 219 2.86e-102 296
MsaG027458 MtrunA17_Chr1g0206701 61.778 225 86 0 1 225 1 225 7.24e-102 295
MsaG027458 MtrunA17_Chr3g0099421 62.557 219 82 0 1 219 26 244 3.55e-97 284
MsaG027458 MtrunA17_Chr1g0206691 61.364 220 84 1 18 236 1 220 4.73e-96 280
MsaG027458 MtrunA17_Chr3g0089141 61.277 235 73 3 1 225 1 227 2.09e-95 278
MsaG027458 MtrunA17_Chr2g0300441 58.051 236 99 0 1 236 1 236 3.02e-95 278
MsaG027458 MtrunA17_Chr1g0208561 60.426 235 75 3 1 225 1 227 5.57e-93 272
MsaG027458 MtrunA17_Chr2g0325971 59.574 235 77 3 1 225 1 227 4.96e-89 262
MsaG027458 MtrunA17_Chr1g0208581 55.932 236 92 2 1 236 1 224 5.82e-86 254
MsaG027458 MtrunA17_Chr3g0099411 57.991 219 73 2 1 219 1 200 2.52e-83 247
MsaG027458 MtrunA17_Chr7g0238991 52.340 235 111 1 3 236 14 248 4.12e-80 240
MsaG027458 MtrunA17_Chr1g0206991 62.637 182 68 0 1 182 1 182 3.74e-79 235
MsaG027458 MtrunA17_Chr3g0119901 48.315 178 92 0 1 178 1 178 1.80e-51 166
MsaG027458 MtrunA17_Chr3g0085241 46.591 176 94 0 3 178 35 210 8.06e-51 166
MsaG027458 MtrunA17_Chr3g0089151 65.487 113 39 0 1 113 1 113 5.10e-49 157
MsaG027458 MtrunA17_Chr2g0300421 63.281 128 47 0 1 128 1 128 1.18e-48 157
MsaG027458 MtrunA17_Chr3g0111931 72.549 102 28 0 21 122 2 103 7.85e-47 150
MsaG027458 MtrunA17_Chr1g0187351 85.075 67 9 1 18 83 1 67 4.89e-35 119
MsaG027458 MtrunA17_Chr3g0111841 89.831 59 6 0 15 73 2 60 2.87e-32 112
MsaG027458 MtrunA17_Chr8g0379021 37.209 172 86 3 5 167 8 166 1.42e-29 108
MsaG027458 MtrunA17_Chr4g0018951 39.610 154 81 2 5 158 8 149 2.33e-28 105
MsaG027458 MtrunA17_Chr2g0333981 32.759 174 105 2 5 174 8 173 4.81e-27 102
MsaG027458 MtrunA17_Chr3g0111831 73.016 63 17 0 16 78 11 73 2.26e-25 95.1
MsaG027458 MtrunA17_Chr1g0169761 50.649 77 38 0 9 85 2 78 6.02e-23 91.7
MsaG027458 MtrunA17_Chr8g0376821 53.521 71 33 0 9 79 2 72 1.05e-22 91.3
MsaG027458 MtrunA17_Chr4g0074101 50.649 77 38 0 9 85 2 78 2.51e-22 90.5
MsaG027458 MtrunA17_Chr8g0356071 34.568 162 94 4 9 165 2 156 3.66e-22 89.4
MsaG027458 MtrunA17_Chr1g0175601 46.753 77 41 0 9 85 2 78 3.26e-21 87.4
MsaG027458 MtrunA17_Chr8g0357771 52.113 71 34 0 9 79 2 72 4.71e-21 87.0
MsaG027458 MtrunA17_Chr1g0175611 46.835 79 42 0 9 87 2 80 7.20e-21 85.9
MsaG027458 MtrunA17_Chr1g0180591 42.105 95 53 1 9 103 2 94 2.15e-20 85.1
MsaG027458 MtrunA17_Chr4g0071601 34.595 185 99 5 5 175 8 184 1.21e-19 83.2
MsaG027458 MtrunA17_Chr4g0052081 53.623 69 32 0 9 77 2 70 1.37e-18 80.1
MsaG027458 MtrunA17_Chr4g0049901 56.061 66 29 0 10 75 29 94 1.75e-18 81.3
MsaG027458 MtrunA17_Chr3g0077501 51.471 68 33 0 9 76 2 69 1.93e-18 80.9
MsaG027458 MtrunA17_Chr4g0052061 52.174 69 33 0 9 77 2 70 4.89e-18 78.2
MsaG027458 MtrunA17_Chr4g0057151 50.000 72 36 0 10 81 3 74 7.40e-18 79.0
MsaG027458 MtrunA17_Chr3g0097101 42.857 84 48 0 3 86 11 94 9.34e-18 79.3
MsaG027458 MtrunA17_Chr8g0351051 50.633 79 37 1 9 85 2 80 2.00e-17 78.6
MsaG027458 MtrunA17_Chr4g0061691 52.174 69 32 1 9 76 2 70 4.83e-17 77.4
MsaG027458 MtrunA17_Chr8g0351041 46.667 75 40 0 10 84 3 77 7.86e-17 75.1
MsaG027458 MtrunA17_Chr2g0279821 41.772 79 46 0 9 87 2 80 7.88e-17 77.0
MsaG027458 MtrunA17_Chr5g0427401 50.000 68 34 0 9 76 2 69 9.17e-17 76.3
MsaG027458 MtrunA17_Chr6g0474371 52.174 69 32 1 9 76 2 70 1.16e-16 75.5
MsaG027458 MtrunA17_Chr8g0380021 50.000 68 34 0 9 76 18 85 1.40e-16 76.3
MsaG027458 MtrunA17_Chr7g0246431 52.239 67 32 0 10 76 3 69 1.82e-16 75.5
MsaG027458 MtrunA17_Chr4g0020221 52.941 68 32 0 9 76 2 69 2.08e-16 75.9
MsaG027458 MtrunA17_Chr2g0284911 50.000 68 34 0 9 76 17 84 3.59e-16 75.5
MsaG027458 MtrunA17_Chr8g0351031 46.667 75 40 0 10 84 3 77 3.65e-16 74.7
MsaG027458 MtrunA17_Chr3g0134451 34.507 142 74 4 9 143 2 131 3.78e-16 76.3
MsaG027458 MtrunA17_Chr4g0049541 39.326 89 43 1 9 97 2 79 4.18e-16 74.7
MsaG027458 MtrunA17_Chr5g0412271 50.000 68 34 0 9 76 2 69 5.44e-16 74.3
MsaG027458 MtrunA17_Chr1g0204111 52.941 68 32 0 9 76 18 85 6.53e-16 74.7
MsaG027458 MtrunA17_Chr5g0412461 50.000 68 34 0 9 76 2 69 6.76e-16 73.9
MsaG027458 MtrunA17_Chr5g0420081 28.854 253 126 11 9 235 2 226 1.28e-15 73.6
MsaG027458 MtrunA17_Chr5g0411691 45.588 68 37 0 9 76 2 69 1.43e-15 73.6
MsaG027458 MtrunA17_Chr6g0455511 50.725 69 33 1 9 76 2 70 1.62e-15 73.6
MsaG027458 MtrunA17_Chr7g0220111 50.725 69 33 1 9 76 2 70 1.88e-15 73.2
MsaG027458 MtrunA17_Chr8g0366231 47.826 69 35 1 9 76 2 70 2.53e-15 72.8
MsaG027458 MtrunA17_Chr7g0220121 45.833 72 38 1 9 79 2 73 2.81e-15 72.8
MsaG027458 MtrunA17_Chr1g0173161 54.098 61 28 0 9 69 2 62 3.48e-15 68.6
MsaG027458 MtrunA17_Chr5g0404951 51.429 70 32 1 9 76 2 71 3.71e-15 72.0
MsaG027458 MtrunA17_Chr7g0246381 53.030 66 26 1 9 69 2 67 6.64e-15 67.4
MsaG027458 MtrunA17_Chr3g0125241 32.857 140 68 5 9 127 27 161 7.61e-15 70.9
MsaG027458 MtrunA17_Chr1g0164791 51.429 70 32 1 9 76 2 71 1.01e-14 70.9
MsaG027458 MtrunA17_Chr1g0159661 50.000 66 32 1 9 74 2 66 1.08e-14 69.7
MsaG027458 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 1.49e-14 66.2
MsaG027458 MtrunA17_Chr5g0420091 49.275 69 34 1 9 76 2 70 1.54e-14 70.1
MsaG027458 MtrunA17_Chr2g0308251 40.698 86 47 1 9 94 2 83 2.08e-14 66.6
MsaG027458 MtrunA17_Chr5g0425191 59.259 54 22 0 8 61 1 54 3.11e-14 66.6
MsaG027458 MtrunA17_Chr8g0377561 55.357 56 25 0 9 64 2 57 4.38e-14 66.2
MsaG027458 MtrunA17_Chr4g0061671 52.632 57 27 0 9 65 2 58 4.83e-14 68.2
MsaG027458 MtrunA17_Chr4g0044071 56.140 57 25 0 9 65 2 58 7.48e-14 65.9
MsaG027458 MtrunA17_Chr3g0142191 45.714 70 36 1 9 76 2 71 8.68e-14 68.2
MsaG027458 MtrunA17_Chr8g0345001 32.934 167 93 7 2 158 9 166 1.32e-13 67.0
MsaG027458 MtrunA17_Chr3g0122251 53.571 56 26 0 9 64 2 57 1.77e-13 67.8
MsaG027458 MtrunA17_Chr4g0025531 29.016 193 112 8 1 181 1 180 4.36e-12 63.5
MsaG027458 MtrunA17_Chr4g0018421 41.429 70 40 1 9 77 2 71 8.71e-12 62.4
MsaG027458 MtrunA17_Chr3g0093131 30.345 145 78 4 26 158 36 169 9.33e-12 62.0
MsaG027458 MtrunA17_Chr4g0060841 41.558 77 43 1 9 83 2 78 6.19e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027458 AT5G60440.1 50.000 190 84 5 5 190 3 185 8.11e-50 165
MsaG027458 AT1G65360.1 40.444 225 119 6 5 223 3 218 1.63e-41 141
MsaG027458 AT2G24840.1 46.875 160 76 3 9 163 63 218 3.30e-38 134
MsaG027458 AT1G01530.1 43.005 193 92 6 4 191 2 181 4.08e-38 133
MsaG027458 AT4G36590.1 44.048 168 76 5 5 160 3 164 6.00e-35 125
MsaG027458 AT3G04100.1 31.056 161 107 2 2 158 7 167 7.39e-26 100
MsaG027458 AT1G72350.1 35.196 179 72 6 9 182 43 182 4.17e-23 93.6
MsaG027458 AT2G34440.1 50.704 71 35 0 9 79 2 72 5.33e-21 87.0
MsaG027458 AT3G66656.1 55.882 68 30 0 9 76 2 69 1.42e-20 85.9
MsaG027458 AT4G37940.4 33.143 175 82 6 9 154 2 170 6.19e-19 82.4
MsaG027458 AT5G51870.5 55.556 72 32 0 5 76 21 92 6.61e-19 82.0
MsaG027458 AT2G45660.2 54.412 68 31 0 10 77 3 70 7.66e-19 80.9
MsaG027458 AT2G45650.1 55.882 68 30 0 9 76 2 69 8.38e-19 82.8
MsaG027458 AT1G28460.1 28.916 166 111 2 5 163 4 169 1.92e-18 80.5
MsaG027458 AT2G45660.1 54.412 68 31 0 10 77 3 70 2.50e-18 80.9
MsaG027458 AT5G51870.2 56.716 67 29 0 10 76 3 69 3.44e-18 79.3
MsaG027458 AT5G51870.1 56.716 67 29 0 10 76 3 69 5.77e-18 79.7
MsaG027458 AT4G22950.2 48.611 72 37 0 10 81 3 74 5.97e-18 79.0
MsaG027458 AT4G09960.2 50.000 68 34 0 9 76 2 69 6.17e-18 79.7
MsaG027458 AT4G37940.1 32.787 183 86 7 9 154 2 184 6.23e-18 80.1
MsaG027458 AT5G51870.3 55.714 70 31 0 7 76 10 79 7.25e-18 79.7
MsaG027458 AT4G09960.6 50.000 68 34 0 9 76 3 70 7.42e-18 79.7
MsaG027458 AT4G09960.1 50.000 68 34 0 9 76 2 69 7.45e-18 79.7
MsaG027458 AT4G09960.5 50.000 68 34 0 9 76 12 79 9.56e-18 79.7
MsaG027458 AT5G51870.4 56.716 67 29 0 10 76 3 69 1.03e-17 79.3
MsaG027458 AT5G10140.2 52.174 69 32 1 9 76 2 70 1.28e-17 77.8
MsaG027458 AT1G29962.1 27.119 177 115 4 5 167 4 180 1.31e-17 78.2
MsaG027458 AT3G57230.1 28.372 215 103 8 9 177 2 211 1.33e-17 79.3
MsaG027458 AT3G57230.4 28.372 215 103 8 9 177 2 211 1.33e-17 79.3
MsaG027458 AT4G09960.3 50.000 68 34 0 9 76 28 95 1.50e-17 79.3
MsaG027458 AT4G22950.3 49.296 71 36 0 10 80 3 73 2.04e-17 78.6
MsaG027458 AT4G22950.1 49.296 71 36 0 10 80 3 73 2.04e-17 78.6
MsaG027458 AT5G10140.4 52.174 69 32 1 9 76 2 70 2.07e-17 77.4
MsaG027458 AT5G10140.1 52.174 69 32 1 9 76 2 70 2.26e-17 77.8
MsaG027458 AT5G10140.3 52.174 69 32 1 9 76 2 70 2.71e-17 77.4
MsaG027458 AT4G09960.4 50.000 68 34 0 9 76 97 164 3.37e-17 79.7
MsaG027458 AT3G57230.2 42.500 80 43 1 9 85 2 81 3.77e-17 75.9
MsaG027458 AT3G57390.3 54.412 68 31 0 9 76 2 69 4.25e-17 77.8
MsaG027458 AT5G62165.14 52.239 67 32 0 10 76 3 69 5.25e-17 74.3
MsaG027458 AT5G62165.17 52.239 67 32 0 10 76 3 69 5.36e-17 75.9
MsaG027458 AT5G62165.12 52.239 67 32 0 10 76 3 69 5.36e-17 75.9
MsaG027458 AT5G62165.11 52.239 67 32 0 10 76 3 69 5.36e-17 75.9
MsaG027458 AT5G62165.6 52.239 67 32 0 10 76 3 69 6.75e-17 75.5
MsaG027458 AT5G62165.9 52.239 67 32 0 10 76 3 69 6.75e-17 75.5
MsaG027458 AT5G62165.7 52.239 67 32 0 10 76 3 69 6.75e-17 75.5
MsaG027458 AT5G62165.8 52.239 67 32 0 10 76 3 69 6.75e-17 75.5
MsaG027458 AT5G62165.13 52.239 67 32 0 10 76 3 69 6.75e-17 75.5
MsaG027458 AT5G23260.4 35.570 149 68 4 5 125 14 162 7.57e-17 77.8
MsaG027458 AT3G57390.1 54.412 68 31 0 9 76 2 69 8.70e-17 77.4
MsaG027458 AT2G22540.3 41.667 96 51 1 9 99 2 97 1.09e-16 77.0
MsaG027458 AT2G22540.1 41.667 96 51 1 9 99 2 97 1.09e-16 77.0
MsaG027458 AT4G18960.1 48.000 75 39 0 2 76 11 85 1.19e-16 77.0
MsaG027458 AT2G22630.1 30.601 183 90 4 9 154 2 184 1.28e-16 76.6
MsaG027458 AT2G22630.2 30.601 183 90 4 9 154 2 184 1.28e-16 76.6
MsaG027458 AT5G62165.10 52.239 67 32 0 10 76 3 69 1.42e-16 75.9
MsaG027458 AT5G62165.4 52.239 67 32 0 10 76 3 69 1.42e-16 75.9
MsaG027458 AT2G42830.1 46.053 76 41 0 1 76 9 84 1.58e-16 76.6
MsaG027458 AT2G42830.2 46.053 76 41 0 1 76 9 84 1.64e-16 76.6
MsaG027458 AT5G62165.3 52.239 67 32 0 10 76 3 69 1.75e-16 75.9
MsaG027458 AT5G62165.1 52.239 67 32 0 10 76 3 69 1.75e-16 75.9
MsaG027458 AT5G62165.2 52.239 67 32 0 10 76 3 69 1.75e-16 75.9
MsaG027458 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.84e-16 74.7
MsaG027458 AT4G24540.1 52.941 68 32 0 9 76 2 69 1.96e-16 75.9
MsaG027458 AT3G58780.5 49.296 71 36 0 6 76 20 90 1.98e-16 76.3
MsaG027458 AT3G58780.1 49.296 71 36 0 6 76 14 84 2.03e-16 76.3
MsaG027458 AT5G13790.2 51.471 68 33 0 9 76 2 69 2.38e-16 76.6
MsaG027458 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.41e-16 76.3
MsaG027458 AT3G30260.1 44.304 79 43 1 9 86 2 80 2.42e-16 76.3
MsaG027458 AT5G23260.2 35.862 145 65 4 9 125 2 146 2.58e-16 76.3
MsaG027458 AT3G54340.1 50.000 70 33 1 9 76 2 71 2.84e-16 75.5
MsaG027458 AT3G58780.4 49.296 71 36 0 6 76 14 84 3.74e-16 76.3
MsaG027458 AT5G51860.2 52.239 67 32 0 10 76 3 69 3.96e-16 74.7
MsaG027458 AT1G77980.1 50.704 71 34 1 9 78 2 72 4.62e-16 76.3
MsaG027458 AT5G51860.1 52.239 67 32 0 10 76 3 69 5.60e-16 74.3
MsaG027458 AT5G23260.1 45.652 92 44 2 5 90 14 105 6.12e-16 75.1
MsaG027458 AT5G65050.2 50.725 69 33 1 9 76 2 70 8.39e-16 73.2
MsaG027458 AT1G22130.1 50.000 76 36 2 9 83 2 76 1.11e-15 75.5
MsaG027458 AT3G61120.1 51.471 68 33 0 9 76 2 69 1.60e-15 73.9
MsaG027458 AT1G77950.3 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MsaG027458 AT1G77950.2 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MsaG027458 AT1G77950.1 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MsaG027458 AT1G77950.4 46.053 76 39 2 9 83 2 76 1.68e-15 73.9
MsaG027458 AT5G60910.1 49.275 69 34 1 9 76 2 70 1.76e-15 73.6
MsaG027458 AT5G65050.1 50.725 69 33 1 9 76 2 70 1.93e-15 72.4
MsaG027458 AT5G65050.3 50.725 69 33 1 9 76 2 70 1.99e-15 72.4
MsaG027458 AT5G65050.5 50.725 69 33 1 9 76 2 70 2.04e-15 72.4
MsaG027458 AT5G23260.3 46.591 88 41 2 9 90 2 89 2.11e-15 73.2
MsaG027458 AT2G14210.1 49.275 69 34 1 9 76 2 70 2.14e-15 73.2
MsaG027458 AT2G14210.2 49.275 69 34 1 9 76 2 70 2.79e-15 72.8
MsaG027458 AT4G11880.2 48.611 72 36 1 10 80 3 74 3.33e-15 71.6
MsaG027458 AT4G11880.3 48.611 72 36 1 10 80 3 74 3.33e-15 71.6
MsaG027458 AT1G17310.1 52.632 76 34 1 8 83 47 120 4.12e-15 72.0
MsaG027458 AT1G69120.2 42.500 80 45 1 9 87 2 81 4.42e-15 72.4
MsaG027458 AT1G26310.1 42.500 80 45 1 9 87 2 81 4.45e-15 72.8
MsaG027458 AT5G15800.1 50.725 69 33 1 9 76 2 70 4.67e-15 72.8
MsaG027458 AT4G11880.4 48.611 72 36 1 10 80 3 74 5.28e-15 72.0
MsaG027458 AT4G11880.1 48.611 72 36 1 10 80 3 74 5.28e-15 72.0
MsaG027458 AT1G17310.2 52.632 76 34 1 8 83 58 131 6.31e-15 72.0
MsaG027458 AT5G15800.2 50.725 69 33 1 9 76 2 70 7.40e-15 72.4
MsaG027458 AT1G69120.1 42.500 80 45 1 9 87 2 81 9.28e-15 72.0
MsaG027458 AT1G28450.1 27.811 169 112 4 5 163 4 172 1.00e-14 70.5
MsaG027458 AT5G20240.2 47.143 70 35 1 9 76 2 71 1.26e-14 69.3
MsaG027458 AT5G65060.2 49.275 69 34 1 9 76 2 70 1.35e-14 70.1
MsaG027458 AT5G65060.3 49.275 69 34 1 9 76 2 70 1.41e-14 70.1
MsaG027458 AT5G65060.1 49.275 69 34 1 9 76 2 70 1.50e-14 70.1
MsaG027458 AT5G20240.1 47.143 70 35 1 9 76 2 71 1.66e-14 70.5
MsaG027458 AT2G03710.3 46.835 79 40 2 9 85 2 80 2.71e-14 69.3
MsaG027458 AT2G22540.2 40.625 96 47 2 9 99 2 92 2.86e-14 70.1
MsaG027458 AT5G65070.4 44.928 69 37 1 9 76 2 70 4.94e-14 67.8
MsaG027458 AT1G71692.1 47.143 70 36 1 9 77 2 71 6.39e-14 68.9
MsaG027458 AT2G03710.2 50.000 70 33 2 9 76 2 71 7.32e-14 69.3
MsaG027458 AT2G03710.1 50.000 70 33 2 9 76 2 71 7.78e-14 69.3
MsaG027458 AT5G65070.1 44.928 69 37 1 9 76 2 70 9.23e-14 68.2
MsaG027458 AT3G58780.2 50.820 61 30 0 6 66 14 74 1.03e-13 68.6
MsaG027458 AT3G02310.2 46.377 69 36 1 9 76 2 70 1.04e-13 68.2
MsaG027458 AT5G65070.2 39.535 86 50 2 9 92 2 87 1.21e-13 68.6
MsaG027458 AT5G65070.5 39.535 86 50 2 9 92 2 87 1.31e-13 67.8
MsaG027458 AT3G58780.3 50.820 61 30 0 6 66 14 74 1.38e-13 68.9
MsaG027458 AT1G24260.3 55.357 56 25 0 9 64 2 57 1.49e-13 68.2
MsaG027458 AT3G02310.1 46.377 69 36 1 9 76 2 70 1.59e-13 68.2
MsaG027458 AT1G24260.1 47.826 69 35 1 9 76 2 70 1.59e-13 68.2
MsaG027458 AT1G24260.2 47.826 69 35 1 9 76 2 70 1.62e-13 68.2
MsaG027458 AT1G47760.1 34.444 90 57 1 9 98 2 89 2.93e-13 66.6
MsaG027458 AT5G65070.3 49.123 57 29 0 9 65 2 58 1.50e-12 65.5
MsaG027458 AT5G65080.3 40.260 77 45 1 1 76 1 77 2.23e-12 64.3
MsaG027458 AT4G37435.1 43.056 72 40 1 9 79 2 73 7.23e-12 62.8
MsaG027458 AT1G18750.4 37.662 77 46 1 9 83 2 78 1.05e-11 64.3
MsaG027458 AT1G18750.3 37.662 77 46 1 9 83 2 78 1.15e-11 63.9
MsaG027458 AT1G18750.1 37.662 77 46 1 9 83 2 78 1.18e-11 63.9
MsaG027458 AT5G65080.2 43.548 62 35 0 1 62 1 62 1.44e-11 62.0
MsaG027458 AT2G26320.1 41.892 74 41 1 5 76 14 87 3.10e-11 58.9
MsaG027458 AT5G49490.1 38.202 89 48 2 5 86 41 129 4.66e-11 61.6
MsaG027458 AT5G49420.1 38.372 86 48 2 5 85 3 88 6.97e-11 61.6
MsaG027458 AT1G46408.1 43.836 73 37 2 10 78 5 77 7.60e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTTATTCATCTCATAAA+TGG 0.175011 5:+45401165 None:intergenic
GAACCATTTACAACATAAAA+TGG 0.248337 5:+45401043 None:intergenic
TCTATGATCGTTTCAACATT+TGG 0.289536 5:+45401382 None:intergenic
GCTGAATCTTGTTGAGGATT+TGG 0.301044 5:+45400992 None:intergenic
CAACATAAAATGGAAGGGTT+TGG 0.302139 5:+45401053 None:intergenic
TTGTTGAAACCAAACAAATA+AGG 0.314433 5:+45400932 None:intergenic
ATGTTGCAACCTTATTTGTT+TGG 0.345480 5:-45400941 MsaT027458.1:CDS
AACATAAAATGGAAGGGTTT+GGG 0.360113 5:+45401054 None:intergenic
AGATAAATCAGGAACAGTTT+TGG 0.363448 5:-45401198 MsaT027458.1:CDS
TTGTTTGGTTTCAACAATAT+AGG 0.376703 5:-45400926 MsaT027458.1:CDS
TGAATTATACAAGAAGGCTT+TGG 0.386209 5:-45401137 MsaT027458.1:CDS
ACCTTATTCATCTCATAAAT+GGG 0.419947 5:+45401166 None:intergenic
TCCCATTTATGAGATGAATA+AGG 0.420859 5:-45401167 MsaT027458.1:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 5:-45401463 MsaT027458.1:CDS
AACAAATAAGGTTGCAACAT+AGG 0.449382 5:+45400944 None:intergenic
TGCTGATGGGGTTGAAATGC+AGG 0.458337 5:-45401086 MsaT027458.1:CDS
CCTGATTTATCTTTCGCACC+TGG 0.470215 5:+45401209 None:intergenic
CCAGGTGCGAAAGATAAATC+AGG 0.478066 5:-45401209 MsaT027458.1:CDS
CCTTCTTGTATAATTCAAGT+TGG 0.484620 5:+45401143 None:intergenic
ACAAATAAGGTTGCAACATA+GGG 0.494926 5:+45400945 None:intergenic
TGTCATCATGCAATTAATTG+AGG 0.500620 5:-45401326 MsaT027458.1:CDS
GCTCGTGCACCTTGGCTCTA+CGG 0.503663 5:+45401299 None:intergenic
ATTATACAAGAAGGCTTTGG+AGG 0.515397 5:-45401134 MsaT027458.1:CDS
AGCAATATATGCACCACAAA+GGG 0.515612 5:+45401450 None:intergenic
CCAACTTGAATTATACAAGA+AGG 0.537115 5:-45401143 MsaT027458.1:CDS
GAAGGTGGACATGGTCCCCA+TGG 0.540091 5:-45400902 MsaT027458.1:CDS
GGTTTCAACAATATAGGAGA+AGG 0.541234 5:-45400920 MsaT027458.1:CDS
CATTTACAACATAAAATGGA+AGG 0.549969 5:+45401047 None:intergenic
GAGCTCAATGGTATATTGAC+TGG 0.553355 5:-45401280 MsaT027458.1:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5:-45401501 MsaT027458.1:CDS
CCGTGAGAATGAGCTAATCC+AGG 0.557926 5:-45401227 MsaT027458.1:CDS
GCCAAGGTGCACGAGCTCAA+TGG 0.560434 5:-45401292 MsaT027458.1:CDS
GGATTTGGCTGATGCTCAAG+AGG 0.568099 5:+45401007 None:intergenic
GCTCATATCAAAAGAACCCA+TGG 0.571548 5:+45400885 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5:-45401502 MsaT027458.1:CDS
ATTTACAACATAAAATGGAA+GGG 0.573802 5:+45401048 None:intergenic
TTGTTGCACAACATGCTGAT+GGG 0.576174 5:-45401099 MsaT027458.1:CDS
ACCATTGAGCTCGTGCACCT+TGG 0.587969 5:+45401291 None:intergenic
CTTGTTGCACAACATGCTGA+TGG 0.590419 5:-45401100 MsaT027458.1:CDS
GGAAAGGCTGAATCTTGTTG+AGG 0.594539 5:+45400986 None:intergenic
TTCAACAATATAGGAGAAGG+TGG 0.597803 5:-45400917 MsaT027458.1:CDS
CTCATATCAAAAGAACCCAT+GGG 0.612341 5:+45400886 None:intergenic
AATGAAAATACTTTCTCACT+AGG 0.614392 5:+45401412 None:intergenic
AATATAGGAGAAGGTGGACA+TGG 0.617303 5:-45400911 MsaT027458.1:CDS
TGTGCTTTAGCCATGTCAAG+CGG 0.619256 5:-45401592 None:intergenic
AAGGTGGACATGGTCCCCAT+GGG 0.619822 5:-45400901 MsaT027458.1:CDS
CCTGGATTAGCTCATTCTCA+CGG 0.627343 5:+45401227 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5:+45401488 None:intergenic
GAGCAATATATGCACCACAA+AGG 0.629097 5:+45401449 None:intergenic
TGAGGATTACCGTAGAGCCA+AGG 0.649629 5:-45401308 MsaT027458.1:CDS
TGTTGCACAACATGCTGATG+GGG 0.659305 5:-45401098 MsaT027458.1:CDS
ATGCTCAAGAGGAATGCTAG+AGG 0.682270 5:+45401018 None:intergenic
TCAAGCGGAAAGAAAACACA+AGG 0.684671 5:-45401577 MsaT027458.1:CDS
GCTGATGGGGTTGAAATGCA+GGG 0.707160 5:-45401085 MsaT027458.1:CDS
TCATATCAAAAGAACCCATG+GGG 0.745957 5:+45400887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 45400892 45401602 45400892 ID=MsaG027458
Chr5 mRNA 45400892 45401602 45400892 ID=MsaT027458.1;Parent=MsaG027458
Chr5 exon 45400892 45401602 45400892 ID=MsaT027458.1.exon1;Parent=MsaT027458.1
Chr5 CDS 45400892 45401602 45400892 ID=cds.MsaT027458.1;Parent=MsaT027458.1
Gene Sequence

>MsaT027458.1

ATGTCAAGCGGAAAGAAAACACAAGGTCGTAAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTAATTATATTCTCACCTAGTGAGAAAGTATTTTCATTTGGTCATCCAAATGTTGAAACGATCATAGATCGTTATCTCTCTCAAGTTCCAGCTCAAAATGATGTCATCATGCAATTAATTGAGGATTACCGTAGAGCCAAGGTGCACGAGCTCAATGGTATATTGACTGGTATGAAAGATGCAATTTGCATCGATAAGAACCGTGAGAATGAGCTAATCCAGGTGCGAAAGATAAATCAGGAACAGTTTTGGTGGACTCGTCCCATTTATGAGATGAATAAGGTCCAACTTGAATTATACAAGAAGGCTTTGGAGGATCTTCTGAAACTTGTTGCACAACATGCTGATGGGGTTGAAATGCAGGGTACTTCTACCCAAACCCTTCCATTTTATGTTGTAAATGGTTCATCCTCTAGCATTCCTCTTGAGCATCAGCCAAATCCTCAACAAGATTCAGCCTTTCCAGCAGAGTTTTTTCAGAACCCTATGTTGCAACCTTATTTGTTTGGTTTCAACAATATAGGAGAAGGTGGACATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MsaT027458.1

MSSGKKTQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGHPNVETIIDRYLSQVPAQNDVIMQLIEDYRRAKVHELNGILTGMKDAICIDKNRENELIQVRKINQEQFWWTRPIYEMNKVQLELYKKALEDLLKLVAQHADGVEMQGTSTQTLPFYVVNGSSSSIPLEHQPNPQQDSAFPAEFFQNPMLQPYLFGFNNIGEGGHGPHGFF*