AlfalfaGEDB | MsaG027468

M. sativa ssp. caerulea / MsaG027468

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027468	XP_003614548.1	76.290	620	99	9	187	768	23	632	0.0	915

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027468	sp\|Q9C6K9\|LRL11_ARATH	44.700	566	264	13	201	735	31	578	5.25e-142	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027468	tr\|G7JZG1\|G7JZG1_MEDTR	76.290	620	99	9	187	768	23	632	0.0	915

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027468	MtrunA17_Chr5g0423061	76.290	620	99	9	187	768	23	632	0.0	915
MsaG027468	MtrunA17_Chr1g0209391	49.225	581	231	16	201	737	30	590	3.30e-167	497
MsaG027468	MtrunA17_Chr1g0209431	45.082	610	256	14	201	747	41	634	4.92e-151	456
MsaG027468	MtrunA17_Chr1g0209381	46.167	574	263	12	201	729	36	608	4.90e-149	451
MsaG027468	MtrunA17_Chr1g0209361	66.463	328	108	2	425	752	320	645	2.25e-147	447
MsaG027468	MtrunA17_Chr7g0251121	64.798	321	110	2	418	738	339	656	1.20e-143	437
MsaG027468	MtrunA17_Chr6g0483931	56.000	400	148	6	382	754	293	691	5.98e-143	436
MsaG027468	MtrunA17_Chr8g0376061	66.556	302	100	1	425	726	313	613	1.21e-138	424
MsaG027468	MtrunA17_Chr6g0467631	57.971	345	141	3	382	725	285	626	2.07e-133	410
MsaG027468	MtrunA17_Chr6g0467601	62.706	303	111	2	425	726	130	431	6.83e-130	395

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027468	AT1G25390.1	44.700	566	264	13	201	735	31	578	5.34e-143	434
MsaG027468	AT1G25390.2	44.700	566	264	13	201	735	31	578	5.34e-143	434
MsaG027468	AT1G18390.1	58.571	350	130	3	385	725	271	614	1.63e-136	418
MsaG027468	AT1G18390.2	57.660	359	137	3	376	725	268	620	1.67e-136	418
MsaG027468	AT5G38210.3	64.375	320	106	3	415	729	321	637	2.09e-132	409
MsaG027468	AT5G38210.2	64.375	320	106	3	415	729	339	655	3.53e-132	409
MsaG027468	AT5G38210.1	62.952	332	114	4	426	752	338	665	7.61e-132	407
MsaG027468	AT1G66880.3	58.430	344	137	3	415	755	315	655	3.45e-129	400
MsaG027468	AT1G66880.2	58.430	344	137	3	415	755	557	897	3.93e-126	399
MsaG027468	AT1G66880.1	58.430	344	137	3	415	755	936	1276	9.54e-123	399

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Find 153 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGCTGTCTACTTT+GGG	0.413409	5:+45624575	MsaT027468.1:CDS
AAAGCAGGAAGGATGAGGCA+GGG	0.662638	5:+45625964	MsaT027468.1:CDS
AAAGGGATACCAGATTTCTG+TGG	0.698230	5:-45625290	None:intergenic
AAAGTTAATTTAGAGCCGTG+TGG	0.650793	5:+45619709	MsaT027468.1:CDS
AAATGTGATAACTTCTGTTG+CGG	0.634864	5:+45625860	MsaT027468.1:CDS
AACAATTCAGTTATCATCTA+TGG	0.307651	5:+45619430	MsaT027468.1:CDS
AACCTCCACCGTACAAATAT+TGG	0.246005	5:-45617699	None:intergenic
AACGTGTTTACCTGAGCCAC+AGG	0.589042	5:-45619787	None:intergenic
AACTTCTATGTATGCAATCA+TGG	0.414576	5:+45619514	MsaT027468.1:CDS
AAGAGCGATGTATATAGCTT+CGG	0.528311	5:+45625675	MsaT027468.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	45615129	45626097	45615129	ID=MsaG027468
Chr5	mRNA	45615129	45626097	45615129	ID=MsaT027468.1;Parent=MsaG027468
Chr5	exon	45615129	45615160	45615129	ID=MsaT027468.1.exon1;Parent=MsaT027468.1
Chr5	CDS	45615129	45615160	45615129	ID=cds.MsaT027468.1;Parent=MsaT027468.1
Chr5	exon	45615216	45615308	45615216	ID=MsaT027468.1.exon2;Parent=MsaT027468.1
Chr5	CDS	45615216	45615308	45615216	ID=cds.MsaT027468.1;Parent=MsaT027468.1
Chr5	exon	45617550	45617934	45617550	ID=MsaT027468.1.exon3;Parent=MsaT027468.1
Chr5	CDS	45617550	45617934	45617550	ID=cds.MsaT027468.1;Parent=MsaT027468.1
Chr5	exon	45618258	45618306	45618258	ID=MsaT027468.1.exon4;Parent=MsaT027468.1
Chr5	CDS	45618258	45618306	45618258	ID=cds.MsaT027468.1;Parent=MsaT027468.1
Chr5	exon	45619236	45619798	45619236	ID=MsaT027468.1.exon5;Parent=MsaT027468.1
Chr5	CDS	45619236	45619798	45619236	ID=cds.MsaT027468.1;Parent=MsaT027468.1
Chr5	exon	45624424	45624694	45624424	ID=MsaT027468.1.exon6;Parent=MsaT027468.1
Chr5	CDS	45624424	45624694	45624424	ID=cds.MsaT027468.1;Parent=MsaT027468.1
Chr5	exon	45625184	45626097	45625184	ID=MsaT027468.1.exon7;Parent=MsaT027468.1
Chr5	CDS	45625184	45626097	45625184	ID=cds.MsaT027468.1;Parent=MsaT027468.1

Gene Sequence

>MsaT027468.1

ATGGCGATTCCTTGGATGGATACCATGTCGCCCAGCGAGATTGAATCTGATAAAAATTACCTTTTCACGACGTCGAGCTTGAAGGCAATGAAAGATGTTGATACGAAAGAGCTAAGACGGATGATAAGCAAAAATGCTAACAATAATAACAATCCGAATGATGATTATCAAGAGTCGAGTTTGCCTCACATTGTTGATCGACTTGAAGACAAGCCAAAACCGCCTATGAAAGTCGGCGAAAATCATTTCCATGTATCATCTAACTACATAGAGCCCAATATTTGTACGGTGGAGGTTACTCCTAAAGAAGATCAAGATCCCAAAAAATATGCTAATGAAAAGGTAGATTCTGATTCTAACATCTTTATGCTTGTGCTTGTCTTTATAAAATATCAAGATATTGACTTAAAAATTGAGAAGTTTGAAGAAGAAATTTCAAGTAGAATTTACCATAAGGCTGGGAATACTCTACTGGAGTTTTTGCAAAAGAATTGTAGTTCAAATCAAGAGGTTGATGTGAATCAGAGGTTCAAAGGTACTCAGCAACCATTCCAAAAAGCTTCACCTGAATGGGATACAAAATGTGCAGAAGAAGAAGCTTCCTGTGGATATCTTGGGGAAATCTCTTTCCCTTTTACGACCGTTGATAAAAGAGAATGTGGCTTACACATAATTGGTTGTGACAATAACAGTTCAGTTAAAACAATCAACCTGATAAACCAAACCTATGAAATTGATAGCATCAGTTTTATGAACAATTCAGTTATCATCTATGGCCTAAATTCTACTGAATTAGAGCCAATAAAGAATACACCAAACTTCAGCATTAACACTATTAACTTCTATGTATGCAATCATGGCTATGACAATAGCCATGATAACAAGTTCAAATATAAAAAATGTGCTGATTATGATATCTACTTTACTTCTACACCTGACAAACCTCCCATGTTCCCTATTTTTCCATTAGCTTGCTTCCCAGTTCCGTTTGAAACTTTCAATTGTGTAGAAATAATTTCATTACTCGAAATTAAAGTTAATTTAGAGCCGTGTGGAGGATGTTATCTTGAAGGAAAGTCATGTCTACTAAACCACGAAACTTTAATTTCACCTGTGGCTCAGCTTTCTATCTTTGACGACACAGGTTTATCTATTGGATTGGCAACTATGATTGTTTTTATTGGTCTGTACTATTGGAGAATCAAATCTTCAGGTGTCAAAAACCAGTTAAGAACCAATTATCATGGTCTCTCAAGAAATACAACAATCCCAGAAAATGGAGCTGTCTACTTTGGGATTCCTGTCTTCTCCTATGAGGAGCTCAAAGAGGCAACAAACAATTTTGATCAAGCTCGAGAGCTTGGAGAAGGAGGCTTTGGGACTATTTACTATGGAAAGCTTGGAGATGGACGAGAAGTTGCAGTGAAGCGCCTATTCGAGCGCAACTACCGACCAGTAGAATCATTCACAAACGAAATTCAGATCCTCACACGCATGCGCCACAGAAATCTGGTATCCCTTTATGGATGCACTTCGCGCCACAGTCGTGAGTTGCTGTTAGTCTATGAATACATCCCAAACGGAACAGTTAGTAGCCATCTCCATGACAACAAAGCAGGCCAAAGCTCATCATTACCATGGTCAGTCAGAATGAAAATAGCCATAGAAACCGCCAGTGCATTAACTTATCTCCATGCTTCCGATGTCATTCACCGAGACGTGAAGACCACCAACATTCTCCTTGACAACAGTTTCTGTGTCAAGGTTGCCGATTTTGGTCTTTCGAGACTATACCCTAATGATGTCACCCACGTCTCCACAGCACCGAGAGGAACACCAGGCTATGTGGATCCAGAATATCGCTTATGCTACCAGCTAACAAGCAAGAGCGATGTATATAGCTTCGGCGTGGTCCTTGTTGAGCTAATATCATCTTTGCCAGCAGTTGATTTGACAAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCCATAAGGAAGATTCGAAGAAGCGAATATTGTGACTTGATTGATCCTTCTCTTGGTTTTCAGACAGATAAGAAATTGAAAAATGTGATAACTTCTGTTGCGGAATTGGCTTTTCAGTGTTTGCAAGAGGAGAAGGAATTGAGACCTACTATGTCTGAAGTGTTGGAGGTGCTGCAGGGAATTGAAAGCAGGAAGGATGAGGCAGGGAATCACGACAGGATTGATTTTCATCCTGAAGTAGGAGTAGCACAAAGTTATGTACATCCATCAGTTCCTAACACTTGGATGACGCCACGACGCCATCAACAAACACTTTGA

Protein sequence

>MsaT027468.1

MAIPWMDTMSPSEIESDKNYLFTTSSLKAMKDVDTKELRRMISKNANNNNNPNDDYQESSLPHIVDRLEDKPKPPMKVGENHFHVSSNYIEPNICTVEVTPKEDQDPKKYANEKVDSDSNIFMLVLVFIKYQDIDLKIEKFEEEISSRIYHKAGNTLLEFLQKNCSSNQEVDVNQRFKGTQQPFQKASPEWDTKCAEEEASCGYLGEISFPFTTVDKRECGLHIIGCDNNSSVKTINLINQTYEIDSISFMNNSVIIYGLNSTELEPIKNTPNFSINTINFYVCNHGYDNSHDNKFKYKKCADYDIYFTSTPDKPPMFPIFPLACFPVPFETFNCVEIISLLEIKVNLEPCGGCYLEGKSCLLNHETLISPVAQLSIFDDTGLSIGLATMIVFIGLYYWRIKSSGVKNQLRTNYHGLSRNTTIPENGAVYFGIPVFSYEELKEATNNFDQARELGEGGFGTIYYGKLGDGREVAVKRLFERNYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVSSHLHDNKAGQSSSLPWSVRMKIAIETASALTYLHASDVIHRDVKTTNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTSKSDVYSFGVVLVELISSLPAVDLTRDRDDIKLANLAIRKIRRSEYCDLIDPSLGFQTDKKLKNVITSVAELAFQCLQEEKELRPTMSEVLEVLQGIESRKDEAGNHDRIDFHPEVGVAQSYVHPSVPNTWMTPRRHQQTL*