AlfalfaGEDB | MsaG027521

M. sativa ssp. caerulea / MsaG027521

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027521	AES97588.1	93.671	158	10	0	1	158	1	158	2.83e-95	282

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027521	tr\|G7K1J4\|G7K1J4_MEDTR	93.671	158	10	0	1	158	1	158	1.35e-95	282

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TFs/TRs:

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Gene ID	Type	Classification
MsaG027521	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000024	MsaG027521	0.818699	2.985460e-52	6.345082e-50
MsaG001238	MsaG027521	0.821299	7.637677e-53	1.738554e-50
MsaG003187	MsaG027521	0.837082	1.174783e-56	4.189295e-54
MsaG003200	MsaG027521	0.823370	2.538169e-53	6.107848e-51
MsaG003201	MsaG027521	0.840559	1.496150e-57	5.943912e-55
MsaG003202	MsaG027521	0.848805	9.196911e-60	4.785259e-57
MsaG003203	MsaG027521	0.823369	2.538949e-53	6.109658e-51
MsaG003239	MsaG027521	0.845415	7.732270e-59	3.591902e-56
MsaG003821	MsaG027521	0.822136	4.900193e-53	1.140562e-50
MsaG004226	MsaG027521	0.803772	5.007662e-49	7.378770e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027521	MtrunA17_Chr5g0423491	93.671	158	10	0	1	158	1	158	2.60e-99	282
MsaG027521	MtrunA17_Chr1g0166461	58.046	174	50	5	1	158	1	167	1.03e-58	180
MsaG027521	MtrunA17_Chr1g0170601	47.368	171	59	7	1	158	1	153	8.37e-33	114
MsaG027521	MtrunA17_Chr1g0187511	35.032	157	78	6	11	158	4	145	3.63e-14	65.9
MsaG027521	MtrunA17_Chr1g0187541	32.624	141	80	4	11	144	6	138	9.76e-13	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGCCATCATGTGG+TGG	0.685328	5:-46730869	None:intergenic
AAAGGGTTTCTGCTTGGCTG+AGG	0.532206	5:-46730917	None:intergenic
AAATCCAATGGATTAACATC+TGG	0.363954	5:-46731109	None:intergenic
AACCAAAACCAACGGTGATT+CGG	0.418396	5:+46730894	MsaT027521.1:CDS
AACTCACATCGAGTCTCACA+TGG	0.586787	5:+46730766	MsaT027521.1:CDS
AATCAGAAAGCTTTATTCAA+CGG	0.559288	5:+46730805	MsaT027521.1:CDS
AATCCAATGGATTAACATCT+GGG	0.500492	5:-46731108	None:intergenic
AGCTTAAGTGATAAATCCAA+TGG	0.575565	5:-46731121	None:intergenic
ATCTTCAAATGATGGTACTA+AGG	0.506473	5:+46731012	MsaT027521.1:CDS
ATGATGTGTCAAACTTGGTA+GGG	0.645237	5:+46730699	MsaT027521.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	46730671	46731147	46730671	ID=MsaG027521
Chr5	mRNA	46730671	46731147	46730671	ID=MsaT027521.1;Parent=MsaG027521
Chr5	exon	46730671	46731147	46730671	ID=MsaT027521.1.exon1;Parent=MsaT027521.1
Chr5	CDS	46730671	46731147	46730671	ID=cds.MsaT027521.1;Parent=MsaT027521.1

Gene Sequence

>MsaT027521.1

ATGGCTGGTGAGTTTAGTAATATTAGGCATGATGTGTCAAACTTGGTAGGGTGTAAATATTGCAACCGCTTTTTCACAAACACTCAAACACTCGTAACTCACATCGAGTCTCACATGGAGTACGAAGAGGCCACAATCAGAAAGCTTTATTCAACGGAGCGTATCAACCCTAAAAGACAATTTCCTCCTCAATGTTTGCCACCACATGATGGCAAGATTTTTCAACCAAAACCAACGGTGATTCGGCCTCAGCCAAGCAGAAACCCTTTTTTCGGCCATGTTGGTTATCGGCAAATGCAACTTCCACCAAATGCTTACCAATCGAAGCACCTAGAAGGAGAATCTTCAAATGATGGTACTAAGGCATATATCAAGCAACTTGAGAAACCTATCAAGAAAATTGATTTCATTGATTTGGTTAATAATGATGATGATAACCCAGATGTTAATCCATTGGATTTATCACTTAAGCTCTAG

Protein sequence

>MsaT027521.1

MAGEFSNIRHDVSNLVGCKYCNRFFTNTQTLVTHIESHMEYEEATIRKLYSTERINPKRQFPPQCLPPHDGKIFQPKPTVIRPQPSRNPFFGHVGYRQMQLPPNAYQSKHLEGESSNDGTKAYIKQLEKPIKKIDFIDLVNNDDDNPDVNPLDLSLKL*