Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027600 | XP_003614872.1 | 92.183 | 371 | 26 | 1 | 29 | 396 | 153 | 523 | 0.0 | 660 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027600 | sp|Q84WU6|ARFQ_ARATH | 33.935 | 277 | 143 | 5 | 17 | 255 | 115 | 389 | 2.16e-40 | 154 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027600 | tr|G7K9Y1|G7K9Y1_MEDTR | 92.183 | 371 | 26 | 1 | 29 | 396 | 153 | 523 | 0.0 | 660 |
Gene ID | Type | Classification |
---|---|---|
MsaG027600 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027600 | MtrunA17_Chr5g0424741 | 92.183 | 371 | 26 | 1 | 29 | 396 | 153 | 523 | 0.0 | 660 |
MsaG027600 | MtrunA17_Chr5g0424931 | 47.165 | 388 | 141 | 7 | 29 | 391 | 132 | 480 | 4.40e-99 | 304 |
MsaG027600 | MtrunA17_Chr5g0424801 | 54.511 | 266 | 97 | 6 | 30 | 293 | 125 | 368 | 2.02e-77 | 244 |
MsaG027600 | MtrunA17_Chr5g0425261 | 54.167 | 264 | 97 | 6 | 30 | 291 | 125 | 366 | 8.81e-77 | 242 |
MsaG027600 | MtrunA17_Chr1g0178011 | 52.290 | 262 | 101 | 6 | 28 | 287 | 126 | 365 | 1.28e-76 | 244 |
MsaG027600 | MtrunA17_Chr5g0417281 | 39.737 | 380 | 174 | 11 | 29 | 390 | 126 | 468 | 5.05e-69 | 226 |
MsaG027600 | MtrunA17_Chr5g0436761 | 39.003 | 341 | 150 | 13 | 29 | 361 | 127 | 417 | 1.86e-57 | 194 |
MsaG027600 | MtrunA17_Chr2g0277461 | 38.957 | 326 | 126 | 11 | 30 | 348 | 131 | 390 | 4.57e-55 | 188 |
MsaG027600 | MtrunA17_Chr3g0115271 | 33.333 | 417 | 185 | 14 | 29 | 391 | 131 | 508 | 2.13e-46 | 167 |
MsaG027600 | MtrunA17_Chr5g0425651 | 64.815 | 108 | 38 | 0 | 137 | 244 | 2 | 109 | 7.14e-45 | 151 |
MsaG027600 | MtrunA17_Chr2g0289221 | 48.990 | 198 | 80 | 8 | 32 | 223 | 139 | 321 | 1.05e-44 | 158 |
MsaG027600 | MtrunA17_Chr5g0417211 | 49.261 | 203 | 81 | 8 | 29 | 223 | 126 | 314 | 4.96e-44 | 157 |
MsaG027600 | MtrunA17_Chr2g0277531 | 42.714 | 199 | 90 | 8 | 29 | 223 | 140 | 318 | 5.55e-40 | 144 |
MsaG027600 | MtrunA17_Chr2g0326761 | 32.776 | 299 | 150 | 8 | 29 | 280 | 122 | 416 | 7.89e-35 | 136 |
MsaG027600 | MtrunA17_Chr4g0028971 | 33.219 | 292 | 137 | 9 | 29 | 268 | 123 | 408 | 1.29e-32 | 129 |
MsaG027600 | MtrunA17_Chr1g0181211 | 29.315 | 365 | 169 | 12 | 29 | 344 | 143 | 467 | 1.03e-30 | 124 |
MsaG027600 | MtrunA17_Chr7g0264171 | 28.723 | 376 | 170 | 13 | 29 | 348 | 145 | 478 | 3.50e-29 | 119 |
MsaG027600 | MtrunA17_Chr1g0199681 | 31.268 | 355 | 172 | 15 | 29 | 342 | 207 | 530 | 1.85e-28 | 117 |
MsaG027600 | MtrunA17_Chr2g0282961 | 30.472 | 233 | 150 | 6 | 18 | 243 | 160 | 387 | 3.27e-25 | 107 |
MsaG027600 | MtrunA17_Chr2g0301251 | 29.362 | 235 | 158 | 5 | 18 | 248 | 128 | 358 | 1.36e-24 | 106 |
MsaG027600 | MtrunA17_Chr1g0156321 | 31.967 | 244 | 149 | 8 | 29 | 259 | 160 | 399 | 3.36e-24 | 105 |
MsaG027600 | MtrunA17_Chr4g0009751 | 27.308 | 260 | 175 | 6 | 29 | 284 | 135 | 384 | 7.41e-24 | 103 |
MsaG027600 | MtrunA17_Chr4g0046371 | 29.787 | 235 | 148 | 8 | 18 | 243 | 150 | 376 | 9.45e-24 | 103 |
MsaG027600 | MtrunA17_Chr4g0070181 | 28.161 | 348 | 225 | 12 | 18 | 355 | 128 | 460 | 1.16e-23 | 103 |
MsaG027600 | MtrunA17_Chr4g0029671 | 31.169 | 231 | 129 | 8 | 29 | 243 | 180 | 396 | 6.69e-23 | 100 |
MsaG027600 | MtrunA17_Chr7g0239061 | 26.641 | 259 | 169 | 8 | 29 | 276 | 130 | 378 | 1.15e-22 | 100 |
MsaG027600 | MtrunA17_Chr3g0109391 | 28.629 | 248 | 167 | 6 | 29 | 269 | 144 | 388 | 1.27e-21 | 97.4 |
MsaG027600 | MtrunA17_Chr5g0433301 | 29.565 | 230 | 150 | 5 | 29 | 248 | 142 | 369 | 3.53e-21 | 95.9 |
MsaG027600 | MtrunA17_Chr8g0389081 | 28.125 | 224 | 155 | 4 | 29 | 249 | 150 | 370 | 7.91e-21 | 95.1 |
MsaG027600 | MtrunA17_Chr8g0376771 | 27.459 | 244 | 163 | 6 | 29 | 263 | 140 | 378 | 1.72e-20 | 94.0 |
MsaG027600 | MtrunA17_Chr5g0425661 | 57.692 | 78 | 31 | 1 | 29 | 104 | 151 | 228 | 2.56e-20 | 89.4 |
MsaG027600 | MtrunA17_Chr2g0326281 | 28.906 | 256 | 138 | 9 | 18 | 243 | 170 | 411 | 3.39e-20 | 92.8 |
MsaG027600 | MtrunA17_Chr7g0264161 | 32.512 | 203 | 122 | 6 | 29 | 223 | 106 | 301 | 3.60e-20 | 90.1 |
MsaG027600 | MtrunA17_Chr2g0285461 | 27.273 | 242 | 166 | 6 | 29 | 263 | 141 | 379 | 1.28e-19 | 91.3 |
MsaG027600 | MtrunA17_Chr8g0385791 | 27.953 | 254 | 158 | 9 | 18 | 258 | 164 | 405 | 1.76e-19 | 90.9 |
MsaG027600 | MtrunA17_Chr2g0276781 | 27.542 | 236 | 153 | 6 | 18 | 243 | 127 | 354 | 2.05e-19 | 90.5 |
MsaG027600 | MtrunA17_Chr8g0356211 | 26.222 | 225 | 144 | 9 | 29 | 243 | 8 | 220 | 5.05e-18 | 84.0 |
MsaG027600 | MtrunA17_Chr8g0346711 | 26.106 | 226 | 154 | 7 | 29 | 249 | 145 | 362 | 7.85e-17 | 82.4 |
MsaG027600 | MtrunA17_Chr5g0424791 | 52.564 | 78 | 31 | 2 | 32 | 109 | 80 | 151 | 1.76e-16 | 76.3 |
MsaG027600 | MtrunA17_Chr5g0424781 | 62.857 | 70 | 26 | 0 | 280 | 349 | 7 | 76 | 3.35e-16 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG027600 | AT1G77850.2 | 33.935 | 277 | 143 | 5 | 17 | 255 | 115 | 389 | 2.15e-41 | 154 |
MsaG027600 | AT1G77850.1 | 33.935 | 277 | 143 | 5 | 17 | 255 | 115 | 389 | 2.19e-41 | 154 |
MsaG027600 | AT4G30080.1 | 32.143 | 308 | 156 | 8 | 29 | 286 | 134 | 438 | 1.08e-32 | 130 |
MsaG027600 | AT2G28350.1 | 32.095 | 296 | 152 | 10 | 29 | 280 | 129 | 419 | 5.65e-29 | 119 |
MsaG027600 | AT2G28350.2 | 32.095 | 296 | 152 | 10 | 29 | 280 | 129 | 419 | 7.03e-29 | 119 |
MsaG027600 | AT2G33860.2 | 31.197 | 234 | 147 | 7 | 18 | 243 | 4 | 231 | 3.16e-27 | 112 |
MsaG027600 | AT2G33860.1 | 31.197 | 234 | 147 | 7 | 18 | 243 | 161 | 388 | 7.85e-27 | 112 |
MsaG027600 | AT3G61830.2 | 30.189 | 265 | 166 | 9 | 29 | 282 | 91 | 347 | 1.51e-26 | 111 |
MsaG027600 | AT3G61830.1 | 30.189 | 265 | 166 | 9 | 29 | 282 | 142 | 398 | 2.12e-26 | 111 |
MsaG027600 | AT2G46530.2 | 29.614 | 233 | 152 | 5 | 29 | 256 | 51 | 276 | 2.21e-25 | 108 |
MsaG027600 | AT2G46530.3 | 29.614 | 233 | 152 | 5 | 29 | 256 | 159 | 384 | 4.12e-25 | 107 |
MsaG027600 | AT2G46530.1 | 29.614 | 233 | 152 | 5 | 29 | 256 | 138 | 363 | 4.86e-25 | 107 |
MsaG027600 | AT1G19850.1 | 31.674 | 221 | 141 | 6 | 29 | 243 | 172 | 388 | 3.88e-24 | 105 |
MsaG027600 | AT1G19850.2 | 31.674 | 221 | 141 | 6 | 29 | 243 | 161 | 377 | 4.59e-24 | 105 |
MsaG027600 | AT5G20730.2 | 31.064 | 235 | 154 | 5 | 18 | 248 | 129 | 359 | 1.60e-23 | 103 |
MsaG027600 | AT1G19220.1 | 27.982 | 218 | 152 | 3 | 29 | 243 | 140 | 355 | 1.06e-22 | 100 |
MsaG027600 | AT5G37020.2 | 28.696 | 230 | 152 | 5 | 29 | 248 | 140 | 367 | 1.23e-22 | 100 |
MsaG027600 | AT5G37020.1 | 28.696 | 230 | 152 | 5 | 29 | 248 | 140 | 367 | 1.42e-22 | 100 |
MsaG027600 | AT5G37020.3 | 28.767 | 219 | 150 | 4 | 29 | 243 | 45 | 261 | 1.53e-22 | 100 |
MsaG027600 | AT5G20730.1 | 30.932 | 236 | 154 | 6 | 18 | 248 | 129 | 360 | 5.40e-22 | 99.0 |
MsaG027600 | AT5G20730.3 | 30.932 | 236 | 154 | 6 | 18 | 248 | 129 | 360 | 5.47e-22 | 99.0 |
MsaG027600 | AT1G34390.1 | 28.636 | 220 | 145 | 6 | 29 | 243 | 138 | 350 | 1.22e-21 | 97.4 |
MsaG027600 | AT1G59750.4 | 28.475 | 295 | 184 | 9 | 18 | 298 | 126 | 407 | 2.60e-21 | 96.7 |
MsaG027600 | AT5G60450.1 | 28.000 | 225 | 142 | 7 | 29 | 243 | 191 | 405 | 4.26e-21 | 95.9 |
MsaG027600 | AT5G60450.2 | 28.270 | 237 | 149 | 8 | 18 | 243 | 155 | 381 | 4.58e-21 | 95.9 |
MsaG027600 | AT4G23980.2 | 26.484 | 219 | 151 | 4 | 29 | 243 | 130 | 342 | 2.07e-20 | 93.6 |
MsaG027600 | AT4G23980.1 | 26.484 | 219 | 151 | 4 | 29 | 243 | 130 | 342 | 2.23e-20 | 93.6 |
MsaG027600 | AT1G35240.1 | 26.667 | 225 | 143 | 7 | 29 | 243 | 140 | 352 | 2.82e-20 | 93.2 |
MsaG027600 | AT1G35520.1 | 28.017 | 232 | 154 | 7 | 18 | 243 | 128 | 352 | 3.12e-20 | 93.2 |
MsaG027600 | AT1G59750.2 | 28.283 | 297 | 184 | 10 | 18 | 298 | 126 | 409 | 3.14e-20 | 93.2 |
MsaG027600 | AT1G34410.1 | 27.273 | 220 | 148 | 6 | 29 | 243 | 140 | 352 | 4.39e-20 | 92.8 |
MsaG027600 | AT1G59750.1 | 27.759 | 299 | 186 | 9 | 18 | 298 | 126 | 412 | 4.66e-20 | 92.8 |
MsaG027600 | AT1G59750.3 | 27.759 | 299 | 186 | 9 | 18 | 298 | 126 | 412 | 4.66e-20 | 92.8 |
MsaG027600 | AT1G30330.1 | 28.405 | 257 | 167 | 10 | 18 | 263 | 129 | 379 | 1.24e-19 | 91.7 |
MsaG027600 | AT1G30330.3 | 28.405 | 257 | 167 | 10 | 18 | 263 | 131 | 381 | 1.28e-19 | 91.7 |
MsaG027600 | AT1G30330.2 | 28.405 | 257 | 167 | 10 | 18 | 263 | 131 | 381 | 1.28e-19 | 91.7 |
MsaG027600 | AT1G34310.1 | 27.556 | 225 | 141 | 7 | 29 | 243 | 140 | 352 | 1.74e-19 | 90.9 |
MsaG027600 | AT5G62000.2 | 28.740 | 254 | 156 | 10 | 18 | 258 | 166 | 407 | 5.01e-19 | 89.7 |
MsaG027600 | AT5G62000.5 | 28.740 | 254 | 156 | 10 | 18 | 258 | 166 | 407 | 5.01e-19 | 89.7 |
MsaG027600 | AT5G62000.3 | 28.740 | 254 | 156 | 10 | 18 | 258 | 166 | 407 | 5.01e-19 | 89.7 |
MsaG027600 | AT5G62000.1 | 28.740 | 254 | 156 | 10 | 18 | 258 | 166 | 407 | 5.01e-19 | 89.7 |
MsaG027600 | AT5G62000.4 | 28.740 | 254 | 156 | 10 | 18 | 258 | 166 | 407 | 5.47e-19 | 89.7 |
MsaG027600 | AT1G34170.1 | 28.829 | 222 | 144 | 7 | 29 | 243 | 138 | 352 | 1.40e-17 | 84.7 |
MsaG027600 | AT1G35540.1 | 25.778 | 225 | 145 | 6 | 29 | 243 | 140 | 352 | 1.38e-16 | 82.0 |
Find 114 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAAGAATGGTTGGGAATT+TGG | 0.146103 | 5:+48682628 | MsaT027600.1:CDS |
TCTCTTTATCATAGGTTAAC+TGG | 0.215844 | 5:+48683796 | MsaT027600.1:intron |
CCGCCTTCCTCTTCAGTTGT+AGG | 0.235630 | 5:-48682466 | None:intergenic |
AAGGATCCCATTGTTGAATA+AGG | 0.268591 | 5:-48684089 | None:intergenic |
CAAGGGAGTTCAAACTATTA+TGG | 0.271208 | 5:-48684286 | None:intergenic |
CCTCAGGAGGAGCTGGTTCT+TGG | 0.290438 | 5:-48682099 | None:intergenic |
GGTAATAGAGGCGGTGGAAT+TGG | 0.297777 | 5:-48683930 | None:intergenic |
AATTCCAACAAATATCTTTC+CGG | 0.302652 | 5:-48682425 | None:intergenic |
TCACTTGGTGCATGGTTCAT+TGG | 0.336449 | 5:-48684312 | None:intergenic |
TGTATTATCCGACGGCTAAT+TGG | 0.337447 | 5:+48682566 | MsaT027600.1:CDS |
TATCAGAATTCAACAATGTT+TGG | 0.347991 | 5:-48684115 | None:intergenic |
TCCTAGCTGGCGTATGCTTC+AGG | 0.352282 | 5:+48682759 | MsaT027600.1:CDS |
TGCCAAGGATTGACGCGGTT+TGG | 0.357981 | 5:-48683843 | None:intergenic |
ACGAATCTGATGCAGATAAA+TGG | 0.364449 | 5:-48684172 | None:intergenic |
GGAATCGAAGGATAAGAATA+TGG | 0.365351 | 5:-48684008 | None:intergenic |
AAGAAACTCAGGTTTACTTC+TGG | 0.365878 | 5:+48682334 | MsaT027600.1:CDS |
CCGACATTCAAGACGTAGTC+TGG | 0.367274 | 5:+48682287 | MsaT027600.1:CDS |
GATAAGAATATGGCATTTGT+AGG | 0.383476 | 5:-48683905 | None:intergenic |
GGAATTGGAGGATAAGAATA+TGG | 0.385197 | 5:-48683915 | None:intergenic |
CGCCTTCCTCTTCAGTTGTA+GGG | 0.385926 | 5:-48682465 | None:intergenic |
CTTTCCCAATCTTGACTTGG+AGG | 0.393297 | 5:+48682234 | MsaT027600.1:CDS |
AGGATCCCATTGTTGAATAA+GGG | 0.394605 | 5:-48684088 | None:intergenic |
GATAAGAATATGGAATTTGT+AGG | 0.394725 | 5:-48683998 | None:intergenic |
CTCTTTATCATAGGTTAACT+GGG | 0.403608 | 5:+48683797 | MsaT027600.1:intron |
CTGGCTCCCAGCATGCCGTC+TGG | 0.405966 | 5:-48684143 | None:intergenic |
ATTCAACAATGTTTGGTTCA+AGG | 0.406117 | 5:-48684108 | None:intergenic |
CTGAAGAGGAAGGCGGGAAA+AGG | 0.410319 | 5:+48682473 | MsaT027600.1:CDS |
GCTATCATCGTCTTCTTCAT+CGG | 0.416752 | 5:-48682125 | None:intergenic |
GAGGAGCTGGTTCTTGGACT+TGG | 0.420907 | 5:-48682093 | None:intergenic |
CTATCATCGTCTTCTTCATC+GGG | 0.426116 | 5:-48682124 | None:intergenic |
CGCCAGCTAGGAACATTAGA+AGG | 0.426148 | 5:-48682748 | None:intergenic |
TGGATCCTCCAAGTCAAGAT+TGG | 0.427196 | 5:-48682239 | None:intergenic |
ATAAGAATATGGCATTTGTA+GGG | 0.430507 | 5:-48683904 | None:intergenic |
TCTGCCGGAAAGATATTTGT+TGG | 0.437161 | 5:+48682421 | MsaT027600.1:CDS |
GACATAGAAGACTGCAATAG+AGG | 0.437550 | 5:-48684035 | None:intergenic |
CATAATAGTTTGAACTCCCT+TGG | 0.439787 | 5:+48684287 | MsaT027600.1:CDS |
AGTTAAAGATGCTGTGGAAT+TGG | 0.445090 | 5:+48682516 | MsaT027600.1:CDS |
ATCCAAACCGCGTCAATCCT+TGG | 0.448152 | 5:+48683841 | MsaT027600.1:CDS |
GGGAATGGTAATAGAGGCGG+TGG | 0.449146 | 5:-48683936 | None:intergenic |
TTTCACTGGGAACAGATCTA+TGG | 0.452019 | 5:+48684223 | MsaT027600.1:CDS |
GATAAGGGTGATGGTTTCAC+TGG | 0.452580 | 5:+48684209 | MsaT027600.1:CDS |
ATGTTTGAGATTGTCCCCTT+TGG | 0.458883 | 5:-48682715 | None:intergenic |
GAATAAGGGAACTCTGTCAT+AGG | 0.460002 | 5:-48684074 | None:intergenic |
TGAAGAGGAAGGCGGGAAAA+GGG | 0.462455 | 5:+48682474 | MsaT027600.1:CDS |
TCTTCTTCATCGGGAACCTC+AGG | 0.467124 | 5:-48682115 | None:intergenic |
CGGGAAAAGGGAGAATTTAA+CGG | 0.473489 | 5:+48682486 | MsaT027600.1:CDS |
GAGTTCCCTTATTCAACAAT+GGG | 0.473672 | 5:+48684083 | MsaT027600.1:CDS |
ATAATAGTTTGAACTCCCTT+GGG | 0.494640 | 5:+48684288 | MsaT027600.1:CDS |
ATAAGAATATGGAATTTGTA+GGG | 0.495923 | 5:-48683997 | None:intergenic |
GGATCCTCCAAGTCAAGATT+GGG | 0.497543 | 5:-48682238 | None:intergenic |
TGCATGGTTCATTGGTCCCA+AGG | 0.500373 | 5:-48684304 | None:intergenic |
AATGGTTGGGAATTTGGAAT+GGG | 0.505443 | 5:+48682634 | MsaT027600.1:CDS |
AAGAATATGGCATTTGTAGG+GGG | 0.508074 | 5:-48683902 | None:intergenic |
GAATGGTTGGGAATTTGGAA+TGG | 0.509049 | 5:+48682633 | MsaT027600.1:CDS |
AACTCAGGTTTACTTCTGGT+TGG | 0.509116 | 5:+48682338 | MsaT027600.1:CDS |
AAGACATATTATCAGCCAAA+GGG | 0.511664 | 5:+48682700 | MsaT027600.1:CDS |
GATCTTTCCCAATCTTGACT+TGG | 0.511867 | 5:+48682231 | MsaT027600.1:CDS |
TCGGGAACCTCAGGAGGAGC+TGG | 0.515759 | 5:-48682106 | None:intergenic |
TTCCTTCTAATGTTCCTAGC+TGG | 0.515821 | 5:+48682746 | MsaT027600.1:CDS |
AAAGATGCTGTGGAATTGGC+TGG | 0.518790 | 5:+48682520 | MsaT027600.1:CDS |
ATGAGGCTATGAAGAATGGT+TGG | 0.527470 | 5:+48682620 | MsaT027600.1:CDS |
GAGAGCTTCTGAGACTGCAT+TGG | 0.537366 | 5:-48682259 | None:intergenic |
AGATATTTGTTGGAATTCGC+AGG | 0.541850 | 5:+48682431 | MsaT027600.1:CDS |
AATAGAGGCGGTGGAATTGG+AGG | 0.543731 | 5:-48683927 | None:intergenic |
GAAGACTGCAATAGAGGCGG+TGG | 0.544397 | 5:-48684029 | None:intergenic |
GTTGATGAGGCTATGAAGAA+TGG | 0.545415 | 5:+48682616 | MsaT027600.1:CDS |
AGAGTTCCCTTATTCAACAA+TGG | 0.546940 | 5:+48684082 | MsaT027600.1:CDS |
AAACCGCGTCAATCCTTGGC+AGG | 0.548583 | 5:+48683845 | MsaT027600.1:CDS |
TTGGACTTGGACACCACCAT+CGG | 0.549005 | 5:-48682080 | None:intergenic |
TGCAGATAAATGGTCATGGC+TGG | 0.554287 | 5:-48684162 | None:intergenic |
GAACTCTGTCATAGGAATGA+AGG | 0.555804 | 5:-48684066 | None:intergenic |
TGAGGCTATGAAGAATGGTT+GGG | 0.565444 | 5:+48682621 | MsaT027600.1:CDS |
GCATGGTTCATTGGTCCCAA+GGG | 0.569364 | 5:-48684303 | None:intergenic |
GGGTAAATATCTACCTGCCA+AGG | 0.572557 | 5:-48683858 | None:intergenic |
AGATCTATGGTAGGGTGGAG+TGG | 0.573466 | 5:+48684236 | MsaT027600.1:CDS |
AAGGGAGAATTTAACGGAGA+AGG | 0.575234 | 5:+48682492 | MsaT027600.1:CDS |
GTCAATGAAGATATCTCACT+TGG | 0.583008 | 5:-48684327 | None:intergenic |
TCAAGTTGTGTATTATCCGA+CGG | 0.584356 | 5:+48682558 | MsaT027600.1:CDS |
CTACAACTGAAGAGGAAGGC+GGG | 0.584889 | 5:+48682467 | MsaT027600.1:CDS |
CCAGACTACGTCTTGAATGT+CGG | 0.587404 | 5:-48682287 | None:intergenic |
GAAGACATATTATCAGCCAA+AGG | 0.587576 | 5:+48682699 | MsaT027600.1:CDS |
GAAGAACTCTGAGAAAGTCT+AGG | 0.588261 | 5:-48683972 | None:intergenic |
CTGGTTGGTCACAATTTGTG+AGG | 0.592410 | 5:+48682353 | MsaT027600.1:CDS |
AAGATATCTCACTTGGTGCA+TGG | 0.593870 | 5:-48684320 | None:intergenic |
TAAGAATATGGCATTTGTAG+GGG | 0.594369 | 5:-48683903 | None:intergenic |
ACTGGGAACAGATCTATGGT+AGG | 0.595871 | 5:+48684227 | MsaT027600.1:CDS |
AATAGAGGCGGTGGAATCGA+AGG | 0.597595 | 5:-48684020 | None:intergenic |
TCTTCATCGGGAACCTCAGG+AGG | 0.597687 | 5:-48682112 | None:intergenic |
AGAATATGGCATTTGTAGGG+GGG | 0.601685 | 5:-48683901 | None:intergenic |
TAAGAATATGGAATTTGTAG+GGG | 0.612098 | 5:-48683996 | None:intergenic |
CTGGGAACAGATCTATGGTA+GGG | 0.619848 | 5:+48684228 | MsaT027600.1:CDS |
TATGTACCCTACAACTGAAG+AGG | 0.620410 | 5:+48682459 | MsaT027600.1:CDS |
AAGAATATGGAATTTGTAGG+GGG | 0.621894 | 5:-48683995 | None:intergenic |
ATTTGTTGGAATTCGCAGGA+AGG | 0.622290 | 5:+48682435 | MsaT027600.1:CDS |
GAAGGCAGTTAAAGATGCTG+TGG | 0.623830 | 5:+48682510 | MsaT027600.1:CDS |
ACCTGAAGCATACGCCAGCT+AGG | 0.625148 | 5:-48682760 | None:intergenic |
GCTACCACGTGAAGAAACTC+AGG | 0.629119 | 5:+48682323 | MsaT027600.1:CDS |
GGAATTGGCTGGGAAGAACA+TGG | 0.633030 | 5:+48682531 | MsaT027600.1:CDS |
CCAAGAACCAGCTCCTCCTG+AGG | 0.640922 | 5:+48682099 | MsaT027600.1:CDS |
CTACCTGCCAAGGATTGACG+CGG | 0.644813 | 5:-48683848 | None:intergenic |
AAGATGCTGTGGAATTGGCT+GGG | 0.646479 | 5:+48682521 | MsaT027600.1:CDS |
GGATGCGAGTGTTGTTGATG+AGG | 0.647140 | 5:+48682603 | MsaT027600.1:CDS |
CTGATGCAGATAAATGGTCA+TGG | 0.654222 | 5:-48684166 | None:intergenic |
TACCCTACAACTGAAGAGGA+AGG | 0.658978 | 5:+48682463 | MsaT027600.1:CDS |
AGAATATGGAATTTGTAGGG+GGG | 0.659659 | 5:-48683994 | None:intergenic |
AGACATATTATCAGCCAAAG+GGG | 0.661902 | 5:+48682701 | MsaT027600.1:CDS |
GGAACAGATCTATGGTAGGG+TGG | 0.666620 | 5:+48684231 | MsaT027600.1:CDS |
TAAACCTGAGTTTCTTCACG+TGG | 0.666809 | 5:-48682327 | None:intergenic |
ATAAGGGTGATGGTTTCACT+GGG | 0.667662 | 5:+48684210 | MsaT027600.1:CDS |
AAATCACACCAATTAGCCGT+CGG | 0.674239 | 5:-48682574 | None:intergenic |
TTCAAACTATTATGGTTACG+AGG | 0.695892 | 5:-48684278 | None:intergenic |
ATCAATTCAATGCATTCACG+AGG | 0.696770 | 5:-48682211 | None:intergenic |
ATAGAAGACTGCAATAGAGG+CGG | 0.698613 | 5:-48684032 | None:intergenic |
CCTACAACTGAAGAGGAAGG+CGG | 0.707887 | 5:+48682466 | MsaT027600.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 48682083 | 48684334 | 48682083 | ID=MsaG027600 |
Chr5 | mRNA | 48682083 | 48684334 | 48682083 | ID=MsaT027600.1;Parent=MsaG027600 |
Chr5 | exon | 48682083 | 48682165 | 48682083 | ID=MsaT027600.1.exon1;Parent=MsaT027600.1 |
Chr5 | CDS | 48682083 | 48682165 | 48682083 | ID=cds.MsaT027600.1;Parent=MsaT027600.1 |
Chr5 | exon | 48682198 | 48682780 | 48682198 | ID=MsaT027600.1.exon2;Parent=MsaT027600.1 |
Chr5 | CDS | 48682198 | 48682780 | 48682198 | ID=cds.MsaT027600.1;Parent=MsaT027600.1 |
Chr5 | exon | 48683810 | 48684334 | 48683810 | ID=MsaT027600.1.exon3;Parent=MsaT027600.1 |
Chr5 | CDS | 48683810 | 48684334 | 48683810 | ID=cds.MsaT027600.1;Parent=MsaT027600.1 |
Gene Sequence |
Protein sequence |