AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027609


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027609 MtrunA17_Chr5g0424801 67.560 373 100 8 1 358 9 375 1.31e-162 468
MsaG027609 MtrunA17_Chr5g0425261 67.857 364 97 7 1 349 9 367 2.31e-162 468
MsaG027609 MtrunA17_Chr5g0424931 48.423 444 160 11 1 388 16 446 3.10e-126 380
MsaG027609 MtrunA17_Chr5g0424741 52.696 408 129 8 1 345 9 415 1.26e-124 376
MsaG027609 MtrunA17_Chr1g0178011 52.778 360 145 9 1 341 9 362 2.81e-115 350
MsaG027609 MtrunA17_Chr5g0417281 50.602 332 140 9 1 316 8 331 2.46e-94 298
MsaG027609 MtrunA17_Chr2g0289221 52.381 315 121 10 1 296 17 321 1.16e-93 291
MsaG027609 MtrunA17_Chr2g0277461 45.225 356 169 10 4 341 13 360 1.81e-83 268
MsaG027609 MtrunA17_Chr5g0436761 39.903 411 209 13 1 385 9 407 4.18e-83 267
MsaG027609 MtrunA17_Chr5g0417211 48.734 316 134 9 1 297 9 315 5.11e-79 254
MsaG027609 MtrunA17_Chr2g0277531 44.660 309 145 9 4 296 20 318 4.61e-74 239
MsaG027609 MtrunA17_Chr3g0115271 33.586 527 246 18 1 459 16 506 6.10e-63 217
MsaG027609 MtrunA17_Chr5g0425661 54.327 208 73 7 3 193 36 238 7.09e-63 206
MsaG027609 MtrunA17_Chr1g0181211 33.038 451 215 13 1 373 24 465 2.22e-55 198
MsaG027609 MtrunA17_Chr2g0326761 34.635 384 179 13 1 322 8 381 1.04e-52 191
MsaG027609 MtrunA17_Chr1g0199681 33.252 412 190 15 1 347 91 482 2.87e-50 184
MsaG027609 MtrunA17_Chr5g0424791 65.714 140 44 2 53 188 12 151 1.57e-49 168
MsaG027609 MtrunA17_Chr4g0028971 34.545 385 174 12 1 317 9 383 2.00e-48 179
MsaG027609 MtrunA17_Chr7g0264171 28.913 460 225 14 1 373 28 472 3.37e-46 171
MsaG027609 MtrunA17_Chr2g0276781 32.029 409 208 15 4 377 23 396 2.74e-42 161
MsaG027609 MtrunA17_Chr2g0285461 33.884 363 182 17 1 320 20 367 1.58e-38 151
MsaG027609 MtrunA17_Chr7g0264161 32.131 305 165 9 14 291 2 291 2.49e-38 143
MsaG027609 MtrunA17_Chr8g0385791 31.548 336 204 9 4 316 59 391 1.06e-37 149
MsaG027609 MtrunA17_Chr8g0376771 32.687 361 188 15 1 320 20 366 1.63e-37 148
MsaG027609 MtrunA17_Chr5g0433301 32.507 363 187 16 1 320 21 368 3.61e-36 144
MsaG027609 MtrunA17_Chr1g0156321 31.092 357 207 11 1 324 40 390 5.38e-36 144
MsaG027609 MtrunA17_Chr4g0009751 30.270 370 215 14 2 343 17 371 7.77e-36 142
MsaG027609 MtrunA17_Chr2g0301251 32.174 345 196 14 1 316 20 355 1.09e-35 143
MsaG027609 MtrunA17_Chr2g0282961 30.337 356 202 13 4 325 53 396 1.25e-35 141
MsaG027609 MtrunA17_Chr3g0109391 31.492 362 192 15 1 320 23 370 8.32e-35 140
MsaG027609 MtrunA17_Chr8g0346711 31.322 348 214 12 4 331 29 371 3.03e-34 137
MsaG027609 MtrunA17_Chr4g0046371 30.851 376 210 14 4 342 38 400 3.56e-34 137
MsaG027609 MtrunA17_Chr7g0239061 28.997 369 210 14 4 336 14 366 4.41e-34 137
MsaG027609 MtrunA17_Chr2g0326281 31.053 380 207 13 4 335 56 428 1.62e-33 136
MsaG027609 MtrunA17_Chr4g0070181 31.304 345 199 14 1 316 20 355 2.04e-33 136
MsaG027609 MtrunA17_Chr5g0425651 52.991 117 51 2 211 324 1 116 4.66e-31 117
MsaG027609 MtrunA17_Chr8g0389081 30.312 353 194 11 1 316 29 366 6.83e-29 122
MsaG027609 MtrunA17_Chr4g0029671 30.108 372 214 12 4 343 54 411 2.33e-28 120
MsaG027609 MtrunA17_Chr8g0356211 26.201 229 137 9 110 316 2 220 2.59e-12 68.2
MsaG027609 MtrunA17_Chr5g0419861 34.711 121 69 4 42 153 12 131 6.13e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027609 AT1G77850.2 32.495 517 257 19 1 447 16 510 1.00e-64 222
MsaG027609 AT1G77850.1 32.495 517 257 19 1 447 16 510 1.32e-64 222
MsaG027609 AT4G30080.1 32.397 463 221 15 1 386 16 463 7.02e-53 191
MsaG027609 AT3G61830.1 33.938 386 206 16 3 359 24 389 4.07e-45 169
MsaG027609 AT2G28350.2 32.911 395 168 15 1 317 7 382 1.28e-44 168
MsaG027609 AT2G28350.1 32.911 395 168 15 1 317 7 382 1.67e-44 168
MsaG027609 AT2G46530.1 32.973 370 200 15 3 343 20 370 1.28e-42 162
MsaG027609 AT2G46530.3 32.973 370 200 15 3 343 41 391 1.64e-42 162
MsaG027609 AT5G37020.2 31.967 366 185 17 1 320 19 366 2.69e-39 154
MsaG027609 AT5G37020.1 31.967 366 185 17 1 320 19 366 4.51e-39 153
MsaG027609 AT1G59750.1 32.938 337 197 11 4 316 22 353 3.21e-38 150
MsaG027609 AT1G59750.3 32.938 337 197 11 4 316 22 353 3.21e-38 150
MsaG027609 AT1G59750.4 32.938 337 197 11 4 316 22 353 3.21e-38 150
MsaG027609 AT1G59750.2 32.938 337 197 11 4 316 22 353 3.35e-38 149
MsaG027609 AT1G30330.1 32.222 360 192 14 1 320 20 367 7.15e-38 150
MsaG027609 AT1G30330.3 32.222 360 192 14 1 320 22 369 7.43e-38 150
MsaG027609 AT1G30330.2 32.222 360 192 14 1 320 22 369 7.43e-38 150
MsaG027609 AT2G33860.1 32.527 372 197 16 4 338 54 408 1.72e-36 144
MsaG027609 AT1G19850.2 31.768 362 197 13 1 323 40 390 1.86e-36 145
MsaG027609 AT1G19850.1 31.768 362 197 13 1 323 51 401 1.99e-36 145
MsaG027609 AT5G62000.2 30.612 343 198 10 4 316 61 393 2.20e-35 142
MsaG027609 AT5G62000.5 30.612 343 198 10 4 316 61 393 2.20e-35 142
MsaG027609 AT5G62000.3 30.612 343 198 10 4 316 61 393 2.20e-35 142
MsaG027609 AT5G62000.1 30.612 343 198 10 4 316 61 393 2.20e-35 142
MsaG027609 AT5G62000.4 30.612 343 198 10 4 316 61 393 2.22e-35 142
MsaG027609 AT1G34390.1 31.487 343 192 12 1 316 24 350 8.78e-34 136
MsaG027609 AT1G35520.1 31.594 345 191 13 1 316 24 352 1.60e-33 135
MsaG027609 AT4G23980.1 28.877 374 213 13 4 345 12 364 2.89e-33 135
MsaG027609 AT4G23980.2 28.877 374 213 13 4 345 12 364 3.08e-33 135
MsaG027609 AT1G35540.1 30.287 383 223 14 1 355 24 390 5.41e-33 134
MsaG027609 AT5G20730.3 31.304 345 200 13 1 316 21 357 5.90e-33 135
MsaG027609 AT1G35240.1 31.884 345 190 14 1 316 24 352 6.00e-33 134
MsaG027609 AT5G20730.1 31.304 345 200 13 1 316 21 357 6.87e-33 135
MsaG027609 AT1G34410.1 30.725 345 194 13 1 316 24 352 7.77e-33 133
MsaG027609 AT1G19220.1 31.322 348 195 13 1 316 20 355 9.60e-33 134
MsaG027609 AT5G20730.2 31.395 344 200 13 1 316 21 356 1.13e-32 134
MsaG027609 AT1G34310.1 31.871 342 188 13 4 316 27 352 2.98e-32 131
MsaG027609 AT5G60450.2 30.601 366 214 12 3 335 40 398 5.19e-32 132
MsaG027609 AT5G60450.1 30.601 366 214 12 3 335 64 422 6.09e-32 131
MsaG027609 AT3G61830.2 32.948 346 187 15 39 359 13 338 1.90e-31 129
MsaG027609 AT1G34170.1 28.606 409 233 17 1 369 22 411 9.37e-29 120
MsaG027609 AT1G34170.2 27.820 399 223 15 1 369 22 385 2.10e-23 103
MsaG027609 AT1G34170.3 27.820 399 223 15 1 369 22 385 2.25e-23 104
MsaG027609 AT2G46530.2 32.319 263 141 12 103 343 36 283 2.04e-22 101
MsaG027609 AT1G43950.1 33.333 207 114 7 1 191 24 222 4.63e-22 95.5
MsaG027609 AT5G37020.3 30.714 280 144 14 77 320 6 271 2.82e-21 98.6
MsaG027609 AT2G33860.2 31.679 262 140 12 104 338 2 251 4.88e-21 96.7

Find 165 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTTATCATAGGTTAAA+TGG 0.116737 5:-48767099 MsaT027609.1:intron
TGTTTCCATCGTCGTCTTCT+TGG 0.207983 5:+48768072 None:intergenic
CGCAGAGTCGACTGATAATT+TGG 0.232255 5:-48766696 MsaT027609.1:CDS
ATAGTTAAATTTGAAGATTC+AGG 0.238302 5:+48767555 None:intergenic
ACCTTAAGCATGTGCCAATT+AGG 0.244625 5:+48767483 None:intergenic
GGTGGTTTCTGCGGGGTATT+AGG 0.250113 5:+48767070 None:intergenic
TAAACTTTAGAGTGAATCTT+TGG 0.260426 5:+48768299 None:intergenic
ATTCTTCTAATGTCCCTAAT+TGG 0.268826 5:-48767497 MsaT027609.1:CDS
TCTTGAGACTTCTGCAACTC+TGG 0.293011 5:+48767963 None:intergenic
ATGGTGATTGTGGCAGCATT+AGG 0.295879 5:+48768236 None:intergenic
TCACTTGGTGCTTGGCTCAT+TGG 0.308376 5:+48766271 None:intergenic
CTTGGTCTGTTACGGGAGTT+AGG 0.314595 5:+48768120 None:intergenic
CTACTTCCCACAAGGTCATT+TGG 0.318755 5:-48768276 MsaT027609.1:CDS
CTCGACTCTGCGCCCAAGTC+AGG 0.332469 5:+48766638 None:intergenic
ATGAAGATTGGTTGGAAATC+TGG 0.337904 5:-48767606 MsaT027609.1:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5:-48766375 MsaT027609.1:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5:-48766582 MsaT027609.1:CDS
CTCTTTATCATAGGTTAAAT+GGG 0.347475 5:-48767098 MsaT027609.1:intron
TCTTCAAATTTAACTATAAG+AGG 0.347983 5:-48767549 MsaT027609.1:CDS
TGACCAGGGGTGGTTTCTGC+GGG 0.350158 5:+48767062 None:intergenic
CCAAGCTTTAGCCTTGTATC+AGG 0.353230 5:+48766743 None:intergenic
TGGTGATTGTGGCAGCATTA+GGG 0.354813 5:+48768237 None:intergenic
AGCGCATTTCTGCCATAGTT+TGG 0.354882 5:+48768340 None:intergenic
TTCTCCCCTCTTTCAGCTGC+AGG 0.356161 5:+48767759 None:intergenic
AGTGATACTTTGGCTGATAC+AGG 0.356278 5:-48766410 MsaT027609.1:CDS
GATGAAAACAACGGAATCTT+CGG 0.357948 5:+48767833 None:intergenic
AGTGATACTTTGGCGGATAC+AGG 0.358719 5:-48766617 MsaT027609.1:CDS
GAGGGCAAAGCTTCGTTTGA+TGG 0.363032 5:-48767580 MsaT027609.1:CDS
GTCTCTGTCACTGACCTTCC+AGG 0.363192 5:-48767939 MsaT027609.1:CDS
AGTGGTACTTTGCTTGATAC+AGG 0.364586 5:-48766824 MsaT027609.1:CDS
CCACAGGAGGAGGAGGTTCT+TGG 0.364923 5:+48768102 None:intergenic
GCCACAATCACCATTCTTGA+TGG 0.366631 5:-48768227 MsaT027609.1:CDS
ATTAACTGAGAGTGCGGTCT+TGG 0.368633 5:-48767736 MsaT027609.1:CDS
AGGAGGTTCTTGGTCTGTTA+CGG 0.370719 5:+48768112 None:intergenic
CAGTTCTAAAGGTGCGGACT+TGG 0.371782 5:-48766444 MsaT027609.1:CDS
GAAGAACTCTGAGATAGTTT+AGG 0.377530 5:+48766971 None:intergenic
CCTTAAGCATGTGCCAATTA+GGG 0.381506 5:+48767484 None:intergenic
AGATTTCCAACCAATCTTCA+TGG 0.383662 5:+48767608 None:intergenic
ATGAAAACAACGGAATCTTC+GGG 0.384466 5:+48767834 None:intergenic
CAGTTCTAAAGGTGCATACT+TGG 0.394032 5:-48766513 MsaT027609.1:CDS
ACACAAACTGATACTAAATC+TGG 0.395790 5:-48768023 MsaT027609.1:CDS
GGAGGTTCTTGGTCTGTTAC+GGG 0.397553 5:+48768113 None:intergenic
CCCTAATTGGCACATGCTTA+AGG 0.403221 5:-48767484 MsaT027609.1:intron
CAGTTCTAAAGGCGCTGACT+TGG 0.411550 5:-48766720 MsaT027609.1:CDS
GGTCTTGGGTGCAGTGGATT+TGG 0.411620 5:-48767721 MsaT027609.1:CDS
TTTATCCCACAGATGGGAAT+TGG 0.411809 5:-48767668 MsaT027609.1:CDS
AACCACCCCTGGTCAATCCT+TGG 0.423879 5:-48767054 MsaT027609.1:CDS
CTCCTATGGACTCCAAACTA+TGG 0.424679 5:-48768352 None:intergenic
GTGTGGAGTTGTTGCCTCAT+AGG 0.439750 5:-48766295 MsaT027609.1:CDS
CACAGATTCGAGTGATACTT+TGG 0.444058 5:-48766420 MsaT027609.1:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.450303 5:-48766455 MsaT027609.1:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.450303 5:-48766524 MsaT027609.1:CDS
TACGGGAGTTAGGAGCAGTT+TGG 0.451525 5:+48768130 None:intergenic
GGTAATGGTGTCAGTGTACT+TGG 0.452357 5:+48766920 None:intergenic
ATCTTTGGAATCTTGACGTC+GGG 0.453371 5:+48768314 None:intergenic
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5:-48766351 MsaT027609.1:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5:-48766489 MsaT027609.1:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5:-48766558 MsaT027609.1:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.457123 5:-48766593 MsaT027609.1:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.461797 5:-48766317 MsaT027609.1:CDS
ATAAACAGTGGAGGCGGTAA+TGG 0.462686 5:+48766905 None:intergenic
CTAAAGCTTGGCAGTTCTAA+AGG 0.463200 5:-48766731 MsaT027609.1:CDS
CAGTTCTAAAGGCCCTGACT+TGG 0.463921 5:-48766651 MsaT027609.1:CDS
CATCTGGCATGCAAGGAGTC+AGG 0.465776 5:-48766877 MsaT027609.1:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.467857 5:-48766627 MsaT027609.1:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.468643 5:-48766662 MsaT027609.1:CDS
TTAACTGAGAGTGCGGTCTT+GGG 0.478339 5:-48767735 MsaT027609.1:CDS
ACCACCCCTGGTCAATCCTT+GGG 0.479960 5:-48767053 MsaT027609.1:CDS
ATAAAGCTTGGCAGTTCTAA+AGG 0.485741 5:-48766386 MsaT027609.1:CDS
AGTTCTAAAGGCGCTGACTT+GGG 0.494023 5:-48766719 MsaT027609.1:CDS
GTATAGGTGTAGACTTTGCC+TGG 0.494583 5:+48767921 None:intergenic
GTAGATGATGCCATGAAGAT+TGG 0.497274 5:-48767618 MsaT027609.1:CDS
CATGGCATCATCTACAACCT+TGG 0.499201 5:+48767626 None:intergenic
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5:-48766374 MsaT027609.1:CDS
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5:-48766581 MsaT027609.1:CDS
TCGACTCTGCGCCCAAGTCA+GGG 0.505174 5:+48766639 None:intergenic
AGTTCTAAAGGCCCTGACTT+GGG 0.505688 5:-48766650 MsaT027609.1:CDS
AAGATACCTCACTTGGTGCT+TGG 0.507669 5:+48766263 None:intergenic
CTTGATACAGGGCTAAAGCT+TGG 0.508063 5:-48766812 MsaT027609.1:CDS
AACTTCCCTGCAGCTGAAAG+AGG 0.509078 5:-48767765 MsaT027609.1:CDS
TCTTCTTGGCCGTGAACCAC+AGG 0.514079 5:+48768086 None:intergenic
CCTCCTCCTCCTGTGGTTCA+CGG 0.519022 5:-48768095 MsaT027609.1:CDS
GAAGGTGCTGACTTGTTCGC+AGG 0.520378 5:-48766851 MsaT027609.1:CDS
GGAGATGTTGACAGTGGAGG+AGG 0.528074 5:+48767006 None:intergenic
GCTGATACAGTGCTAAAGCT+TGG 0.530738 5:-48766329 MsaT027609.1:CDS
TTGACCAGGGGTGGTTTCTG+CGG 0.531772 5:+48767061 None:intergenic
GCGGATACAGGGCTAAAGCT+TGG 0.532091 5:-48766605 MsaT027609.1:CDS
GCTGATACAGGGATAAAGCT+TGG 0.532500 5:-48766398 MsaT027609.1:CDS
CAACCTCCCAAGGATTGACC+AGG 0.532831 5:+48767047 None:intergenic
AGGTGTAGACTTTGCCTGGA+AGG 0.536557 5:+48767925 None:intergenic
GCTGATACAGAGCTAAAGCT+TGG 0.537434 5:-48766674 MsaT027609.1:CDS
TGGCCGTGAACCACAGGAGG+AGG 0.540091 5:+48768092 None:intergenic
ACTTCCCTGCAGCTGAAAGA+GGG 0.541157 5:-48767764 MsaT027609.1:CDS
CCATGCATCGTCTCTACTGT+TGG 0.543464 5:-48768188 MsaT027609.1:CDS
AAATATATGTCGGAATTCGC+AGG 0.543716 5:-48767794 MsaT027609.1:CDS
CCTGATACAAGGCTAAAGCT+TGG 0.543990 5:-48766743 MsaT027609.1:CDS
GAGACGATGCATGGAATGGA+TGG 0.546365 5:+48768197 None:intergenic
AGTTCTAAAGGTGCGGACTT+GGG 0.546645 5:-48766443 MsaT027609.1:CDS
TTGGTTGGAAATCTGGAATG+AGG 0.547760 5:-48767599 MsaT027609.1:CDS
CTTGGCTCATTGGACCTATG+AGG 0.550878 5:+48766281 None:intergenic
GCTGATACAAGGCTAAAGCT+TGG 0.556830 5:-48766467 MsaT027609.1:CDS
GCTGATACAAGGCTAAAGCT+TGG 0.556830 5:-48766536 MsaT027609.1:CDS
ATGATGCCATGAAGATTGGT+TGG 0.558711 5:-48767614 MsaT027609.1:CDS
TCCCAAGGATTGACCAGGGG+TGG 0.559408 5:+48767052 None:intergenic
AGTTCTAAAGGTGCATACTT+GGG 0.560941 5:-48766512 MsaT027609.1:CDS
GTGATACTTTGGCTGATACA+AGG 0.561337 5:-48766478 MsaT027609.1:CDS
GTGATACTTTGGCTGATACA+AGG 0.561337 5:-48766547 MsaT027609.1:CDS
CCGTGAACCACAGGAGGAGG+AGG 0.561880 5:+48768095 None:intergenic
GTGGTACTTTGCCTGATACA+AGG 0.562508 5:-48766754 MsaT027609.1:CDS
GAGTGCGGTCTTGGGTGCAG+TGG 0.564030 5:-48767727 MsaT027609.1:CDS
TCTCCCCTCTTTCAGCTGCA+GGG 0.565059 5:+48767760 None:intergenic
ATGCAAGGAGTCAGGCAAGA+AGG 0.567091 5:-48766869 MsaT027609.1:CDS
AAACTATGGCAGAAATGCGC+TGG 0.567239 5:-48768338 MsaT027609.1:CDS
GTGATACTTTGGCGGATACA+GGG 0.568488 5:-48766616 MsaT027609.1:CDS
ATTACACCAATTCCCATCTG+TGG 0.570163 5:+48767662 None:intergenic
AGTAGAGACGATGCATGGAA+TGG 0.572932 5:+48768193 None:intergenic
GACTTGTTCGCAGGGTCGAG+TGG 0.575371 5:-48766842 MsaT027609.1:CDS
AAACAGAGTAGACTAACTAA+AGG 0.575699 5:-48767891 MsaT027609.1:CDS
TGTTGTGGAGATGTTGACAG+TGG 0.578376 5:+48767000 None:intergenic
CTGACTCCTTGCATGCCAGA+TGG 0.584361 5:+48766878 None:intergenic
CATGTTCCAAATGACCTTGT+GGG 0.588081 5:+48768270 None:intergenic
GGTGATTGTGGCAGCATTAG+GGG 0.588227 5:+48768238 None:intergenic
TGGTTGGAAATCTGGAATGA+GGG 0.589287 5:-48767598 MsaT027609.1:CDS
TGGACGGTAACCATCAAGAA+TGG 0.589526 5:+48768217 None:intergenic
ACCATCAAGAATGGTGATTG+TGG 0.590838 5:+48768226 None:intergenic
GTGGTACTTTGCTTGATACA+GGG 0.591580 5:-48766823 MsaT027609.1:CDS
CCAAGAACCTCCTCCTCCTG+TGG 0.595254 5:-48768102 MsaT027609.1:CDS
TTACACCAATTCCCATCTGT+GGG 0.595749 5:+48767663 None:intergenic
TTGTGTGAGAGTCTTGACAT+AGG 0.600208 5:+48768040 None:intergenic
ACAGTGGAGGAGGAAGTTGA+CGG 0.601762 5:+48767016 None:intergenic
TGCCATAGTTTGGAGTCCAT+AGG 0.605278 5:+48768350 None:intergenic
ATCAAGTCTGTGCATTGACG+AGG 0.606145 5:+48767990 None:intergenic
GCCAATGAAGATACCTCACT+TGG 0.608165 5:+48766256 None:intergenic
GCAAAGACCTCGTCGGTGTG+AGG 0.608714 5:+48768152 None:intergenic
GTGATACTTTGGCTGATACA+GGG 0.609258 5:-48766409 MsaT027609.1:CDS
GCTTGGCAGTTCTAAAGGTG+TGG 0.615631 5:-48766312 MsaT027609.1:CDS
CTTCCCTGCAGCTGAAAGAG+GGG 0.617250 5:-48767763 MsaT027609.1:CDS
CGATGCATGGAATGGATGGA+CGG 0.620709 5:+48768201 None:intergenic
CAGTGGAGGAGGAAGTTGAC+GGG 0.623769 5:+48767017 None:intergenic
TGTGGAGATGTTGACAGTGG+AGG 0.625945 5:+48767003 None:intergenic
AGAGTAGACTAACTAAAGGA+TGG 0.627717 5:-48767887 MsaT027609.1:CDS
GGGTAAACTTCAACCTCCCA+AGG 0.632620 5:+48767037 None:intergenic
GCATGTTCCAAATGACCTTG+TGG 0.633704 5:+48768269 None:intergenic
TACCCCGCAGAAACCACCCC+TGG 0.634765 5:-48767065 MsaT027609.1:CDS
AATCTTTGGAATCTTGACGT+CGG 0.641188 5:+48768313 None:intergenic
GACCAGGGGTGGTTTCTGCG+GGG 0.641988 5:+48767063 None:intergenic
AAGGTGCTGACTTGTTCGCA+GGG 0.642119 5:-48766850 MsaT027609.1:CDS
ACCCCTGGTCAATCCTTGGG+AGG 0.647009 5:-48767050 MsaT027609.1:CDS
CCAACAGTAGAGACGATGCA+TGG 0.649094 5:+48768188 None:intergenic
TCTTGGCCGTGAACCACAGG+AGG 0.650102 5:+48768089 None:intergenic
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5:-48766381 MsaT027609.1:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5:-48766450 MsaT027609.1:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5:-48766588 MsaT027609.1:CDS
AATGAGCCAAGCACCAAGTG+AGG 0.655123 5:-48766269 None:intergenic
TGTTGATCCTCACACCGACG+AGG 0.655379 5:-48768159 MsaT027609.1:CDS
AGAGTCGAGTGATACTTTGG+CGG 0.658205 5:-48766624 MsaT027609.1:CDS
CAGTTTGGCAAAGACCTCGT+CGG 0.663811 5:+48768145 None:intergenic
GACTTGTTTGCAGAGTCGAG+TGG 0.669905 5:-48766773 MsaT027609.1:CDS
AACCTCCCAAGGATTGACCA+GGG 0.674108 5:+48767048 None:intergenic
AAAGTTTACTACTTCCCACA+AGG 0.678948 5:-48768284 MsaT027609.1:CDS
GGAGAAATTAACTGAGAGTG+CGG 0.686397 5:-48767742 MsaT027609.1:CDS
ACCTCCCAAGGATTGACCAG+GGG 0.687043 5:+48767049 None:intergenic
TGAAAACAACGGAATCTTCG+GGG 0.698750 5:+48767835 None:intergenic
CACGGCCAAGAAGACGACGA+TGG 0.706758 5:-48768077 MsaT027609.1:CDS
GGATTTGGCTAACAAGAACG+TGG 0.730069 5:-48767706 MsaT027609.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 48766271 48768369 48766271 ID=MsaG027609
Chr5 mRNA 48766271 48768369 48766271 ID=MsaT027609.1;Parent=MsaG027609
Chr5 exon 48766271 48767107 48766271 ID=MsaT027609.1.exon2;Parent=MsaT027609.1
Chr5 CDS 48766271 48767107 48766271 ID=cds.MsaT027609.1;Parent=MsaT027609.1
Chr5 exon 48767485 48768369 48767485 ID=MsaT027609.1.exon1;Parent=MsaT027609.1
Chr5 CDS 48767485 48768369 48767485 ID=cds.MsaT027609.1;Parent=MsaT027609.1
Gene Sequence

>MsaT027609.1

ATGGACTCCAAACTATGGCAGAAATGCGCTGGTCCCGACGTCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCACAAGGTCATTTGGAACATGCATGTTCTTCCCCTAATGCTGCCACAATCACCATTCTTGATGGTTACCGTCCATCCATTCCATGCATCGTCTCTACTGTTGGTCTCTTTGTTGATCCTCACACCGACGAGGTCTTTGCCAAACTGCTCCTAACTCCCGTAACAGACCAAGAACCTCCTCCTCCTGTGGTTCACGGCCAAGAAGACGACGATGGAAACAATCTTGTTTCCTATGTCAAGACTCTCACACAAACTGATACTAAATCTGGATTCAATATGCCTCGTCAATGCACAGACTTGATCTTTCCAGAGTTGCAGAAGTCTCAAGAAGTCTCTGTCACTGACCTTCCAGGCAAAGTCTACACCTATACCTACTCAAAACAGAGTAGACTAACTAAAGGATGGTTTAATTTTGTAAGTGAGAAGAAACTCGTCCCCGAAGATTCCGTTGTTTTCATCAAAAACTCTGCCGGAAAAATATATGTCGGAATTCGCAGGAACACTAACTTCCCTGCAGCTGAAAGAGGGGAGAAATTAACTGAGAGTGCGGTCTTGGGTGCAGTGGATTTGGCTAACAAGAACGTGGCGTTTGAAGTTGTGTTTTATCCCACAGATGGGAATTGGTGTAATTTTGTAGTGGATGCCAAGGTTGTAGATGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGGGCAAAGCTTCGTTTGATGGAACCTGAATCTTCAAATTTAACTATAAGAGGTTTTCAGCGGGAGGGGACAATCTCTAATGATTCTTCTAATGTCCCTAATTGGCACATGCTTAAGGTTAAATGGGATGAACCTAATACCCCGCAGAAACCACCCCTGGTCAATCCTTGGGAGGTTGAAGTTTACCCGTCAACTTCCTCCTCCACTGTCAACATCTCCACAACAAAAAGTCCTAAACTATCTCAGAGTTCTTCTCCCCGACAAATTCAAAATTCTTTAATGCCAAGTACACTGACACCATTACCGCCTCCACTGTTTATTTTTCCATCTGGCATGCAAGGAGTCAGGCAAGAAGGTGCTGACTTGTTCGCAGGGTCGAGTGGTACTTTGCTTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGATGCTGACTTGTTTGCAGAGTCGAGTGGTACTTTGCCTGATACAAGGCTAAAGCTTGGCAGTTCTAAAGGCGCTGACTTGGGCGCAGAGTCGACTGATAATTTGGCTGATACAGAGCTAAAGCTTGGCAGTTCTAAAGGCCCTGACTTGGGCGCAGAGTCGAGTGATACTTTGGCGGATACAGGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAAGGCTAAAGCTTGGCAGTTCTAAAGGTGCATACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAAGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCACAGATTCGAGTGATACTTTGGCTGATACAGGGATAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAGTGCTAAAGCTTGGCAGTTCTAAAGGTGTGGAGTTGTTGCCTCATAGGTCCAATGAGCCAAGCACCAAGTGA

Protein sequence

>MsaT027609.1

MDSKLWQKCAGPDVKIPKIHSKVYYFPQGHLEHACSSPNAATITILDGYRPSIPCIVSTVGLFVDPHTDEVFAKLLLTPVTDQEPPPPVVHGQEDDDGNNLVSYVKTLTQTDTKSGFNMPRQCTDLIFPELQKSQEVSVTDLPGKVYTYTYSKQSRLTKGWFNFVSEKKLVPEDSVVFIKNSAGKIYVGIRRNTNFPAAERGEKLTESAVLGAVDLANKNVAFEVVFYPTDGNWCNFVVDAKVVDDAMKIGWKSGMRAKLRLMEPESSNLTIRGFQREGTISNDSSNVPNWHMLKVKWDEPNTPQKPPLVNPWEVEVYPSTSSSTVNISTTKSPKLSQSSSPRQIQNSLMPSTLTPLPPPLFIFPSGMQGVRQEGADLFAGSSGTLLDTGLKLGSSKDADLFAESSGTLPDTRLKLGSSKGADLGAESTDNLADTELKLGSSKGPDLGAESSDTLADTGLKLGSSKGADLGAESSDTLADTRLKLGSSKGAYLGAESSDTLADTRLKLGSSKGADLGTDSSDTLADTGIKLGSSKGADLGAESSDTLADTVLKLGSSKGVELLPHRSNEPSTK*