AlfalfaGEDB | MsaG027621

M. sativa ssp. caerulea / MsaG027621

KEGG: K14431
GO: GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	XP_003614897.2	96.648	358	12	0	16	373	1	358	0.0	723

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	sp\|Q93ZE2\|TGA7_ARATH	52.785	377	148	6	1	361	1	363	6.68e-122	359

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	tr\|G7K933\|G7K933_MEDTR	96.648	358	12	0	16	373	1	358	0.0	723

TFs/TRs:

Gene ID	Type	Classification
MsaG027621	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG027621	0.808158	6.048585e-50	9.880628e-48
MsaG000139	MsaG027621	0.813043	5.380955e-51	9.903332e-49
MsaG000142	MsaG027621	0.862053	1.315947e-63	1.106720e-60
MsaG000325	MsaG027621	0.867453	2.727459e-65	2.844526e-62
MsaG000467	MsaG027621	0.803432	5.885804e-49	8.604708e-47
MsaG000648	MsaG027621	0.812065	8.783295e-51	1.577617e-48
MsaG001138	MsaG027621	0.805969	1.748823e-49	2.711914e-47
MsaG002137	MsaG027621	0.805008	2.775430e-49	4.208508e-47
MsaG002481	MsaG027621	0.830187	6.080940e-55	1.769296e-52
MsaG002885	MsaG027621	0.825960	6.268986e-54	1.619466e-51
MsaG003422	MsaG027621	0.812512	7.023738e-51	1.275712e-48
MsaG003712	MsaG027621	0.840466	1.581337e-57	6.264179e-55
MsaG003715	MsaG027621	0.869672	5.276684e-66	6.031277e-63
MsaG003778	MsaG027621	0.803946	4.609962e-49	6.820214e-47
MsaG003796	MsaG027621	0.847739	1.806245e-59	9.067378e-57
MsaG003804	MsaG027621	0.848360	1.219563e-59	6.250185e-57
MsaG003894	MsaG027621	0.813512	4.249184e-51	7.912802e-49
MsaG004092	MsaG027621	0.814152	3.075768e-51	5.820164e-49
MsaG004112	MsaG027621	0.813408	4.477884e-51	8.316830e-49
MsaG004280	MsaG027621	0.882956	1.438784e-70	2.986217e-67
MsaG004654	MsaG027621	0.814460	2.631811e-51	5.018773e-49
MsaG004656	MsaG027621	0.801162	1.717262e-48	2.383536e-46
MsaG004718	MsaG027621	0.801023	1.833044e-48	2.536250e-46
MsaG004887	MsaG027621	0.805686	2.003832e-49	3.086843e-47
MsaG005055	MsaG027621	0.819213	2.284191e-52	4.920676e-50
MsaG005641	MsaG027621	0.821303	7.621617e-53	1.735083e-50
MsaG005728	MsaG027621	0.827960	2.094510e-54	5.721310e-52
MsaG005886	MsaG027621	0.830401	5.394708e-55	1.579304e-52
MsaG006090	MsaG027621	0.809822	2.672934e-50	4.545118e-48
MsaG006240	MsaG027621	0.832982	1.255165e-55	3.960055e-53
MsaG006547	MsaG027621	0.820964	9.113438e-53	2.056235e-50
MsaG006638	MsaG027621	0.818475	3.354864e-52	7.088621e-50
MsaG006683	MsaG027621	0.840087	1.984567e-57	7.768511e-55
MsaG006855	MsaG027621	0.831161	3.519817e-55	1.053109e-52
MsaG007241	MsaG027621	0.854486	2.299663e-61	1.458731e-58
MsaG007416	MsaG027621	0.801219	1.672262e-48	2.324017e-46
MsaG007584	MsaG027621	0.809469	3.181852e-50	5.364579e-48
MsaG007742	MsaG027621	0.812566	6.834441e-51	1.242994e-48
MsaG007768	MsaG027621	0.826392	4.953216e-54	1.294980e-51
MsaG007828	MsaG027621	0.802261	1.024408e-48	1.457826e-46
MsaG008155	MsaG027621	0.807292	9.220508e-50	1.475229e-47
MsaG008238	MsaG027621	0.808074	6.301938e-50	1.027371e-47
MsaG008298	MsaG027621	0.802999	7.228393e-49	1.046238e-46
MsaG008511	MsaG027621	0.802826	7.843518e-49	1.130733e-46
MsaG009117	MsaG027621	0.840384	1.661662e-57	6.565611e-55
MsaG009531	MsaG027621	0.816100	1.141553e-51	2.269066e-49
MsaG010112	MsaG027621	0.805795	1.901824e-49	2.937112e-47
MsaG010265	MsaG027621	0.819085	2.442574e-52	5.244192e-50
MsaG010637	MsaG027621	0.806433	1.397559e-49	2.191291e-47
MsaG010644	MsaG027621	0.803153	6.720236e-49	9.761349e-47
MsaG010706	MsaG027621	0.811354	1.251895e-50	2.209772e-48
MsaG010860	MsaG027621	0.816662	8.555207e-52	1.725125e-49
MsaG010890	MsaG027621	0.805284	2.431012e-49	3.709840e-47
MsaG011316	MsaG027621	0.805972	1.746456e-49	2.708418e-47
MsaG011481	MsaG027621	0.844156	1.682950e-58	7.500846e-56
MsaG011484	MsaG027621	0.819142	2.370145e-52	5.096454e-50
MsaG011812	MsaG027621	0.802733	8.196903e-49	1.179166e-46
MsaG011941	MsaG027621	0.828457	1.592281e-54	4.410719e-52
MsaG012046	MsaG027621	0.868071	1.730929e-65	1.851773e-62
MsaG012208	MsaG027621	0.802128	1.090960e-48	1.547792e-46
MsaG012478	MsaG027621	0.819433	2.036605e-52	4.412702e-50
MsaG012496	MsaG027621	0.809338	3.392298e-50	5.700964e-48
MsaG012497	MsaG027621	0.802334	9.896795e-49	1.410837e-46
MsaG014292	MsaG027621	0.812450	7.245727e-51	1.313968e-48
MsaG015722	MsaG027621	0.854877	1.773991e-61	1.141035e-58
MsaG016329	MsaG027621	0.800337	2.526832e-48	3.442453e-46
MsaG016495	MsaG027621	0.811845	9.802819e-51	1.751325e-48
MsaG016974	MsaG027621	0.831949	2.256463e-55	6.908703e-53
MsaG017057	MsaG027621	0.803651	5.303892e-49	7.793336e-47
MsaG017219	MsaG027621	0.803071	6.984954e-49	1.012688e-46
MsaG017290	MsaG027621	0.828802	1.315402e-54	3.678850e-52
MsaG017483	MsaG027621	0.842643	4.247823e-58	1.803326e-55
MsaG017495	MsaG027621	0.813287	4.759590e-51	8.812971e-49
MsaG017839	MsaG027621	0.811925	9.421479e-51	1.686529e-48
MsaG018082	MsaG027621	0.810464	1.947300e-50	3.363312e-48
MsaG018149	MsaG027621	0.811431	1.204988e-50	2.130980e-48
MsaG018214	MsaG027621	0.817141	6.687965e-52	1.365427e-49
MsaG018598	MsaG027621	0.847579	1.997589e-59	9.974036e-57
MsaG018633	MsaG027621	0.850436	3.240397e-60	1.782605e-57
MsaG018735	MsaG027621	0.848751	9.518485e-60	4.943601e-57
MsaG018751	MsaG027621	0.823720	2.103528e-53	5.110298e-51
MsaG018795	MsaG027621	0.833172	1.126067e-55	3.572902e-53
MsaG018960	MsaG027621	0.813706	3.854335e-51	7.212240e-49
MsaG019183	MsaG027621	0.830939	3.987931e-55	1.185581e-52
MsaG019187	MsaG027621	0.808069	6.316874e-50	1.029691e-47
MsaG019188	MsaG027621	0.866866	4.190067e-65	4.268457e-62
MsaG019275	MsaG027621	0.828413	1.631626e-54	4.514014e-52
MsaG019308	MsaG027621	0.853462	4.523932e-61	2.766661e-58
MsaG019421	MsaG027621	0.831265	3.320540e-55	9.964277e-53
MsaG019657	MsaG027621	0.809401	3.289491e-50	5.536768e-48
MsaG019721	MsaG027621	0.802237	1.036306e-48	1.473922e-46
MsaG019806	MsaG027621	0.861588	1.823304e-63	1.506021e-60
MsaG020003	MsaG027621	0.822218	4.693124e-53	1.094730e-50
MsaG020149	MsaG027621	0.824369	1.483798e-53	3.668869e-51
MsaG020202	MsaG027621	0.805028	2.748374e-49	4.169564e-47
MsaG020245	MsaG027621	0.842812	3.832253e-58	1.635595e-55
MsaG020732	MsaG027621	0.834831	4.347211e-56	1.448829e-53
MsaG020716	MsaG027621	0.838022	6.759336e-57	2.480757e-54
MsaG020834	MsaG027621	0.803671	5.254266e-49	7.724047e-47
MsaG021321	MsaG027621	0.803636	5.342693e-49	7.847473e-47
MsaG021650	MsaG027621	0.803407	5.956052e-49	8.702327e-47
MsaG022627	MsaG027621	0.838400	5.409814e-57	2.008732e-54
MsaG022933	MsaG027621	0.800498	2.343242e-48	3.204004e-46
MsaG023095	MsaG027621	0.800266	2.611801e-48	3.552476e-46
MsaG023268	MsaG027621	0.842820	3.812660e-58	1.627652e-55
MsaG023406	MsaG027621	0.815316	1.703963e-51	3.320323e-49
MsaG023416	MsaG027621	0.830936	3.994462e-55	1.187424e-52
MsaG023561	MsaG027621	0.824558	1.340057e-53	3.330454e-51
MsaG023641	MsaG027621	0.827885	2.183461e-54	5.951829e-52
MsaG023648	MsaG027621	0.842660	4.203730e-58	1.785544e-55
MsaG023796	MsaG027621	0.822459	4.127128e-53	9.689801e-51
MsaG023962	MsaG027621	0.809965	2.491677e-50	4.251410e-48
MsaG024008	MsaG027621	0.816410	9.736823e-52	1.950766e-49
MsaG024480	MsaG027621	0.807985	6.580086e-50	1.070453e-47
MsaG024642	MsaG027621	0.803275	6.341238e-49	9.237066e-47
MsaG026480	MsaG027621	0.823757	2.062144e-53	5.014788e-51
MsaG026754	MsaG027621	0.834642	4.846482e-56	1.606164e-53
MsaG026961	MsaG027621	0.827610	2.540645e-54	6.872229e-52
MsaG026987	MsaG027621	0.821385	7.298764e-53	1.665184e-50
MsaG027248	MsaG027621	0.801119	1.752580e-48	2.430166e-46
MsaG027395	MsaG027621	0.808140	6.100925e-50	9.961825e-48
MsaG027505	MsaG027621	0.857116	3.954613e-62	2.759447e-59
MsaG027557	MsaG027621	0.872123	8.295218e-67	1.052349e-63
MsaG027590	MsaG027621	0.825226	9.336998e-54	2.363351e-51
MsaG027621	MsaG027725	0.813434	4.420244e-51	8.215166e-49
MsaG027621	MsaG027762	0.800137	2.773727e-48	3.761748e-46
MsaG027621	MsaG027845	0.817341	6.033262e-52	1.238086e-49
MsaG027621	MsaG028248	0.816785	8.034344e-52	1.625263e-49
MsaG027621	MsaG028324	0.817695	5.025989e-52	1.040780e-49
MsaG027621	MsaG028480	0.804118	4.246576e-49	6.307831e-47
MsaG027621	MsaG028620	0.807409	8.711329e-50	1.397677e-47
MsaG027621	MsaG028661	0.811847	9.793307e-51	1.749708e-48
MsaG027621	MsaG028802	0.820978	9.049858e-53	2.042618e-50
MsaG027621	MsaG028844	0.819672	1.797525e-52	3.918952e-50
MsaG027621	MsaG029054	0.802001	1.158302e-48	1.638582e-46
MsaG027621	MsaG029063	0.827064	3.428186e-54	9.131669e-52
MsaG027621	MsaG029093	0.821300	7.635053e-53	1.737997e-50
MsaG027621	MsaG029152	0.803642	5.326950e-49	7.825446e-47
MsaG027621	MsaG029147	0.825787	6.887877e-54	1.770708e-51
MsaG027621	MsaG029307	0.800878	1.961764e-48	2.705520e-46
MsaG027621	MsaG029464	0.828435	1.611811e-54	4.462037e-52
MsaG027621	MsaG029580	0.821376	7.333761e-53	1.672749e-50
MsaG027621	MsaG029792	0.808279	5.699900e-50	9.338367e-48
MsaG027621	MsaG030039	0.821583	6.573009e-53	1.507445e-50
MsaG027621	MsaG030196	0.827325	2.970628e-54	7.971345e-52
MsaG027621	MsaG030231	0.808079	6.286246e-50	1.024942e-47
MsaG027621	MsaG031007	0.803956	4.587936e-49	6.789204e-47
MsaG027621	MsaG031494	0.820803	9.923421e-53	2.229302e-50
MsaG027621	MsaG032286	0.813619	4.026267e-51	7.517633e-49
MsaG027621	MsaG032279	0.811152	1.384482e-50	2.431697e-48
MsaG027621	MsaG032491	0.845916	5.662808e-59	2.674440e-56
MsaG027621	MsaG032915	0.800600	2.234886e-48	3.062959e-46
MsaG027621	MsaG033029	0.818462	3.377166e-52	7.133504e-50
MsaG027621	MsaG033231	0.821990	5.296980e-53	1.228084e-50
MsaG027621	MsaG034590	0.813493	4.290207e-51	7.985071e-49
MsaG027621	MsaG035530	0.814962	2.040193e-51	3.940067e-49
MsaG027621	MsaG039573	0.807714	7.510605e-50	1.213885e-47
MsaG027621	MsaG039901	0.801323	1.592402e-48	2.218345e-46
MsaG027621	MsaG040095	0.844526	1.339959e-58	6.044672e-56
MsaG027621	MsaG040728	0.824438	1.429518e-53	3.541239e-51
MsaG027621	MsaG041072	0.844779	1.146283e-58	5.214680e-56
MsaG027621	MsaG041299	0.860327	4.388214e-63	3.455382e-60
MsaG027621	MsaG041453	0.809272	3.504362e-50	5.879978e-48
MsaG027621	MsaG041985	0.834557	5.091918e-56	1.683120e-53
MsaG027621	MsaG042000	0.807037	1.043428e-49	1.659387e-47
MsaG027621	MsaG042102	0.803465	5.794220e-49	8.477301e-47
MsaG027621	MsaG043550	0.811221	1.337872e-50	2.353833e-48
MsaG027621	MsaG043695	0.801741	1.309058e-48	1.840986e-46
MsaG027621	MsaG043890	0.820940	9.230861e-53	2.081379e-50
MsaG027621	MsaG044107	0.803842	4.843034e-49	7.147742e-47
MsaG027621	MsaG044499	0.840902	1.217448e-57	4.889090e-55
MsaG027621	MsaG044516	0.820151	1.398398e-52	3.087999e-50
MsaG027621	MsaG044546	0.846452	4.051753e-59	1.947960e-56
MsaG027621	MsaG044916	0.811753	1.026187e-50	1.829177e-48
MsaG027621	MsaG044918	0.820003	1.511442e-52	3.324488e-50
MsaG027621	MsaG044957	0.820428	1.208903e-52	2.689186e-50
MsaG027621	MsaG045028	0.806252	1.525527e-49	2.381660e-47
MsaG027621	MsaG045360	0.810041	2.399885e-50	4.102366e-48
MsaG027621	MsaG045387	0.824377	1.477681e-53	3.654492e-51
MsaG027621	MsaG045510	0.810613	1.808414e-50	3.134747e-48
MsaG027621	MsaG045518	0.838916	3.985621e-57	1.504057e-54
MsaG027621	MsaG045739	0.812793	6.100055e-51	1.115679e-48
MsaG027621	MsaG045820	0.819414	2.056430e-52	4.453514e-50
MsaG027621	MsaG045822	0.872251	7.524913e-67	9.598208e-64
MsaG027621	MsaG045986	0.838047	6.663307e-57	2.447290e-54
MsaG027621	MsaG046054	0.869005	8.671993e-66	9.640142e-63
MsaG027621	MsaG046104	0.816464	9.472496e-52	1.900413e-49
MsaG027621	MsaG046167	0.808452	5.237514e-50	8.616524e-48
MsaG027621	MsaG046540	0.855114	1.515820e-61	9.832553e-59
MsaG027621	MsaG046528	0.824255	1.577520e-53	3.888337e-51
MsaG027621	MsaG046503	0.801584	1.409048e-48	1.974507e-46
MsaG027621	MsaG046555	0.821795	5.874399e-53	1.354810e-50
MsaG027621	MsaG046660	0.847499	2.101325e-59	1.046376e-56
MsaG027621	MsaG046754	0.806455	1.382968e-49	2.169521e-47
MsaG027621	MsaG046780	0.804770	3.109609e-49	4.689283e-47
MsaG027621	MsaG047011	0.844903	1.061775e-58	4.850647e-56
MsaG027621	MsaG047077	0.800430	2.418779e-48	3.302280e-46
MsaG027621	MsaG001966	0.826473	4.738395e-54	1.241650e-51
MsaG027621	MsaG002630	0.809239	3.562536e-50	5.972718e-48
MsaG027621	MsaG002000	0.801856	1.239762e-48	1.748126e-46
MsaG027621	MsaG002578	0.827879	2.190229e-54	5.969249e-52
MsaG027621	MsaG001072	0.813637	3.990514e-51	7.454183e-49
MsaG027621	MsaG002954	0.848043	1.490653e-59	7.560361e-57
MsaG027621	MsaG008811	0.814707	2.321429e-51	4.454438e-49
MsaG027621	MsaG009124	0.835544	2.877794e-56	9.797938e-54
MsaG027621	MsaG010554	0.869359	6.661342e-66	7.514776e-63
MsaG027621	MsaG014278	0.853633	4.041799e-61	2.486716e-58
MsaG027621	MsaG013546	0.864706	2.000418e-64	1.867930e-61
MsaG027621	MsaG014406	0.817269	6.261826e-52	1.282641e-49
MsaG027621	MsaG014164	0.825899	6.477983e-54	1.670647e-51
MsaG027621	MsaG013859	0.813036	5.398501e-51	9.934087e-49
MsaG027621	MsaG014017	0.826081	5.868645e-54	1.521144e-51
MsaG027621	MsaG013041	0.802371	9.727502e-49	1.387842e-46
MsaG027621	MsaG011821	0.858579	1.461572e-62	1.076972e-59
MsaG027621	MsaG019817	0.803485	5.739490e-49	8.401058e-47
MsaG027621	MsaG019915	0.837961	7.008561e-57	2.567400e-54
MsaG027621	MsaG020283	0.813746	3.777417e-51	7.075483e-49
MsaG027621	MsaG027695	0.811858	9.739059e-51	1.740493e-48
MsaG027621	MsaG028782	0.816911	7.529639e-52	1.528131e-49
MsaG027621	MsaG027201	0.829014	1.169018e-54	3.289131e-52
MsaG027621	MsaG027840	0.850158	3.872374e-60	2.109907e-57
MsaG027621	MsaG032924	0.800568	2.267590e-48	3.105584e-46
MsaG027621	MsaG033619	0.817705	4.998822e-52	1.035430e-49
MsaG027621	MsaG030607	0.854794	1.874655e-61	1.202181e-58
MsaG027621	MsaG032991	0.800950	1.896627e-48	2.619924e-46
MsaG027621	MsaG034732	0.803287	6.305232e-49	9.187056e-47
MsaG027621	MsaG031964	0.818155	3.961227e-52	8.301114e-50
MsaG027621	MsaG029994	0.831666	2.648045e-55	8.041148e-53
MsaG027621	MsaG032683	0.826233	5.401649e-54	1.405964e-51
MsaG027621	MsaG031508	0.821881	5.611607e-53	1.297241e-50
MsaG027621	MsaG032664	0.816202	1.083349e-51	2.159030e-49
MsaG027621	MsaG033449	0.800644	2.188711e-48	3.002722e-46
MsaG027621	MsaG033259	0.807147	9.891410e-50	1.577160e-47
MsaG027621	MsaG039733	0.822125	4.929509e-53	1.147029e-50
MsaG027621	MsaG039696	0.821376	7.333761e-53	1.672749e-50
MsaG027621	MsaG039788	0.826884	3.783804e-54	1.002887e-51
MsaG027621	MsaG038172	0.815080	1.921205e-51	3.721276e-49
MsaG027621	MsaG038591	0.819306	2.176146e-52	4.699415e-50
MsaG027621	MsaG035248	0.808053	6.365095e-50	1.037155e-47
MsaG027621	MsaG037051	0.817919	4.475223e-52	9.321320e-50
MsaG027621	MsaG037447	0.802243	1.033346e-48	1.469916e-46
MsaG027621	MsaG036928	0.806269	1.513346e-49	2.363591e-47
MsaG027621	MsaG036408	0.826971	3.607713e-54	9.585280e-52
MsaG027621	MsaG042683	0.816744	8.203053e-52	1.657676e-49
MsaG027621	MsaG040992	0.809245	3.551375e-50	5.954978e-48
MsaG027621	MsaG046854	0.802735	8.189304e-49	1.178121e-46
MsaG027621	MsaG047025	0.817405	5.837783e-52	1.199957e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	MtrunA17_Chr5g0424861	96.379	359	12	1	16	373	1	359	0.0	719
MsaG027621	MtrunA17_Chr3g0115371	65.143	350	114	4	16	361	1	346	1.05e-157	447
MsaG027621	MtrunA17_Chr5g0424851	80.603	232	44	1	141	371	1	232	3.35e-131	382
MsaG027621	MtrunA17_Chr5g0424851	74.882	211	53	0	146	356	220	430	9.68e-109	325
MsaG027621	MtrunA17_Chr3g0124601	49.587	363	172	3	4	361	2	358	2.71e-117	344
MsaG027621	MtrunA17_Chr8g0382861	47.126	348	177	4	14	361	13	353	2.23e-99	298
MsaG027621	MtrunA17_Chr8g0353501	51.568	287	128	2	82	361	181	463	1.26e-89	277
MsaG027621	MtrunA17_Chr7g0256211	50.871	287	130	3	82	361	167	449	7.33e-89	275
MsaG027621	MtrunA17_Chr2g0321431	51.429	280	129	2	82	361	194	466	7.59e-89	276
MsaG027621	MtrunA17_Chr7g0258321	47.020	302	149	3	69	361	161	460	4.79e-88	273
MsaG027621	MtrunA17_Chr1g0174701	42.037	383	196	7	4	361	122	503	1.60e-85	268
MsaG027621	MtrunA17_Chr4g0026401	45.981	311	155	5	52	361	160	458	1.89e-83	262
MsaG027621	MtrunA17_Chr5g0422771	44.631	298	154	2	71	361	168	461	4.01e-78	248
MsaG027621	MtrunA17_Chr1g0210151	46.367	289	149	3	77	360	49	336	2.90e-77	241
MsaG027621	MtrunA17_Chr3g0093451	43.827	162	84	3	84	238	48	209	1.76e-40	142
MsaG027621	MtrunA17_Chr1g0196951	31.000	200	115	5	163	357	59	240	3.49e-15	74.3
MsaG027621	MtrunA17_Chr7g0242651	25.698	179	117	3	188	354	45	219	2.27e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	AT1G77920.1	52.785	377	148	6	1	361	1	363	6.79e-123	359
MsaG027621	AT1G22070.1	50.538	372	159	4	14	365	17	383	8.01e-118	347
MsaG027621	AT5G10030.5	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.3	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.1	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.4	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.2	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G65210.5	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.7	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.3	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.1	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.2	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.4	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.6	53.512	299	135	2	72	369	3	298	3.82e-105	311
MsaG027621	AT1G08320.2	47.095	327	154	6	46	361	8	326	2.03e-91	278
MsaG027621	AT1G08320.5	47.095	327	154	6	46	361	8	326	2.03e-91	278
MsaG027621	AT1G08320.1	47.095	327	154	6	46	361	132	450	6.47e-90	279
MsaG027621	AT1G08320.4	47.095	327	154	6	46	361	132	450	6.47e-90	279
MsaG027621	AT1G08320.3	47.095	327	154	6	46	361	132	450	6.47e-90	279
MsaG027621	AT5G06839.1	45.322	342	166	5	37	361	75	412	6.23e-86	266
MsaG027621	AT5G06950.2	48.951	286	136	2	82	361	46	327	7.05e-86	263
MsaG027621	AT5G06950.4	48.951	286	136	2	82	361	46	327	7.05e-86	263
MsaG027621	AT5G06950.1	48.951	286	136	2	82	361	46	327	7.05e-86	263
MsaG027621	AT5G06950.5	48.951	286	136	2	82	361	46	327	7.05e-86	263
MsaG027621	AT5G06950.3	48.951	286	136	2	82	361	46	327	7.05e-86	263
MsaG027621	AT5G06839.3	47.213	305	146	2	72	361	151	455	1.33e-85	267
MsaG027621	AT5G06839.2	44.606	343	168	5	37	361	75	413	9.09e-85	263
MsaG027621	AT3G12250.5	48.601	286	137	2	82	361	19	300	2.20e-84	259
MsaG027621	AT3G12250.6	48.601	286	137	2	82	361	46	327	3.91e-84	259
MsaG027621	AT3G12250.2	48.601	286	137	2	82	361	46	327	3.91e-84	259
MsaG027621	AT3G12250.7	48.601	286	137	2	82	361	46	327	3.91e-84	259
MsaG027621	AT3G12250.1	48.601	286	137	2	82	361	46	327	3.91e-84	259
MsaG027621	AT3G12250.3	48.601	286	137	2	82	361	40	321	4.95e-84	258
MsaG027621	AT3G12250.4	48.601	286	137	2	82	361	71	352	1.98e-83	258
MsaG027621	AT5G06960.2	48.252	286	138	2	82	361	46	327	5.48e-83	256
MsaG027621	AT5G06960.1	48.252	286	138	2	82	361	46	327	5.48e-83	256
MsaG027621	AT5G06960.3	48.252	286	138	2	82	361	26	307	5.68e-83	255
MsaG027621	AT1G68640.1	44.631	298	153	3	72	361	156	449	1.60e-72	233
MsaG027621	AT1G58330.1	29.381	194	114	6	178	354	36	223	1.94e-12	66.6

Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTATTGGATGTCGGTTATA+TGG	0.184139	5:-49000826	MsaT027621.1:CDS
TCTTTGTTTGAAATTGAATA+TGG	0.229069	5:-49000696	MsaT027621.1:CDS
CAAGCTGATCCCTTGGATTT+CGG	0.267505	5:-48999873	MsaT027621.1:CDS
TTTATACAGAAACAGTTTAT+TGG	0.277561	5:-49000841	MsaT027621.1:CDS
TGCTCAAGGCTTGTTGGCTA+TGG	0.316587	5:-48999541	MsaT027621.1:CDS
ATCCTCCTATCCAAAGAAAA+AGG	0.354680	5:+49000475	None:intergenic
TTATGTTCATCTTCAACATT+GGG	0.356119	5:+49001748	None:intergenic
TCATTCAAATTCTCAAGTTT+CGG	0.363992	5:+49000002	None:intergenic
GCTGAAGATGCACTGTCAAT+AGG	0.369583	5:-48999933	MsaT027621.1:CDS
CTTATGTTCATCTTCAACAT+TGG	0.379233	5:+49001747	None:intergenic
GCTCAAGGCTTGTTGGCTAT+GGG	0.379556	5:-48999540	MsaT027621.1:CDS
CTAACCTGAGTTTATTGTTC+CGG	0.383626	5:+49000797	None:intergenic
CTCAACTAATCGCGCCGAAA+AGG	0.387136	5:-49001857	MsaT027621.1:CDS
TCAAGCTGCTCAAGGCTTGT+TGG	0.395796	5:-48999547	MsaT027621.1:CDS
ACAGGCTTATGTTCAACAAC+TGG	0.406023	5:-49001026	MsaT027621.1:intron
CTTTCAGATGGCTGCTGCCA+TGG	0.412683	5:-48999841	MsaT027621.1:CDS
TATCGAGAAAACAAGAAAAC+AGG	0.417815	5:-49000966	MsaT027621.1:intron
CTTTGCAGGCAGATCACCTT+AGG	0.420677	5:-48999611	MsaT027621.1:intron
TTATTGGATGTCGGTTATAT+GGG	0.423086	5:-49000825	MsaT027621.1:CDS
CCTCCCACATAGTCACTTGA+AGG	0.428980	5:+49001814	None:intergenic
AAGGTTCTCTTGATTCTTGA+GGG	0.435161	5:+49001599	None:intergenic
CCCTTGGATTTCGGAAACTA+CGG	0.436857	5:-48999864	MsaT027621.1:CDS
CAAGAATCAAGAGAACCTTC+TGG	0.437311	5:-49001595	MsaT027621.1:CDS
TACTGCTTCTCCTTTGTCCA+TGG	0.443791	5:+48999824	None:intergenic
CTGAAGATGCACTGTCAATA+GGG	0.444666	5:-48999932	MsaT027621.1:CDS
GACAAAGGAGAAGCAGTAGA+AGG	0.456711	5:-48999819	MsaT027621.1:CDS
AGTGTTGAGTAGGGTAGAAA+TGG	0.460652	5:+48999460	None:intergenic
CAACATTCAAGCTGATCCCT+TGG	0.462368	5:-48999880	MsaT027621.1:CDS
TCTTAATTTGAGTGTTGAGT+AGG	0.465347	5:+48999450	None:intergenic
GTCGGTTATATGGGAACGTC+CGG	0.469360	5:-49000816	MsaT027621.1:CDS
GAAGGTTCTCTTGATTCTTG+AGG	0.474792	5:+49001598	None:intergenic
TGTTGTTGATCATACTCTGC+TGG	0.478454	5:+48999898	None:intergenic
TCTATTTAATCTCTGGCGTA+TGG	0.481044	5:-49000515	MsaT027621.1:CDS
ATGTCACGCATCTTATCAAT+TGG	0.485700	5:-48999570	MsaT027621.1:CDS
CTCAAGGCTTGTTGGCTATG+GGG	0.490238	5:-48999539	MsaT027621.1:CDS
CTTAATTTGAGTGTTGAGTA+GGG	0.496496	5:+48999451	None:intergenic
CATAAGTAGCATGGAGAACA+AGG	0.509417	5:-49001730	MsaT027621.1:intron
CACATAGTCACTTGAAGGAA+TGG	0.522645	5:+49001819	None:intergenic
CATTCCTTCAAGTGACTATG+TGG	0.523116	5:-49001818	MsaT027621.1:CDS
TCAAGGCTTGTTGGCTATGG+GGG	0.523504	5:-48999538	MsaT027621.1:CDS
AGATGCACTGTCAATAGGGT+TGG	0.527361	5:-48999928	MsaT027621.1:CDS
ATAACAGAGTTTGTTGCCTA+AGG	0.529419	5:+48999595	None:intergenic
TTGAAATTGAATATGGACGT+TGG	0.536052	5:-49000689	MsaT027621.1:CDS
TCAATTGGTCAAGCTGCTCA+AGG	0.536456	5:-48999555	MsaT027621.1:CDS
TTCGCACTCTTAGTTCATTG+TGG	0.540430	5:-48999500	MsaT027621.1:CDS
TATTCAAGAACCTGTTCCTA+AGG	0.542554	5:-49001557	MsaT027621.1:intron
TAGATTGAAGCTCATGCAGT+TGG	0.542577	5:-49000996	MsaT027621.1:CDS
CGGAAACTACGGCTTTCAGA+TGG	0.543160	5:-48999853	MsaT027621.1:CDS
AATGAAAGCAGAAGCTGCAA+AGG	0.554661	5:-49000547	MsaT027621.1:CDS
AGAAACAGTTTATTGGATGT+CGG	0.555658	5:-49000834	MsaT027621.1:CDS
GCCGTAGTTTCCGAAATCCA+AGG	0.586415	5:+48999863	None:intergenic
GAAGATGAACATAAGTAGCA+TGG	0.592197	5:-49001739	MsaT027621.1:CDS
TGTACATTTAGAATTTGTGA+TGG	0.598170	5:+49000447	None:intergenic
GCGCGGCTGCTCGAAAATGT+CGG	0.599361	5:-49001130	MsaT027621.1:CDS
ATGGCTGCTGCCATGGACAA+AGG	0.602885	5:-48999834	MsaT027621.1:CDS
GTCTCTTGATCATCTCCAGA+AGG	0.603267	5:+49001580	None:intergenic
CTCTGGCGTATGGAAATCAC+CGG	0.616184	5:-49000505	MsaT027621.1:CDS
TTCATCTACTTGTCGAGAGT+AGG	0.630773	5:-49000596	MsaT027621.1:CDS
CCGTAGTTTCCGAAATCCAA+GGG	0.636532	5:+48999864	None:intergenic
CCTTCAAGTGACTATGTGGG+AGG	0.650193	5:-49001814	MsaT027621.1:CDS
ATTCCTTCAAGTGACTATGT+GGG	0.664208	5:-49001817	MsaT027621.1:CDS
ACGTCCGGAACAATAAACTC+AGG	0.666698	5:-49000801	MsaT027621.1:intron
CTTGCTGAGATGATAAACGC+AGG	0.683767	5:+48999955	None:intergenic
TATGTTCATCTTCAACATTG+GGG	0.698417	5:+49001749	None:intergenic
ACGTCAAGCACAGAATCGCG+CGG	0.719929	5:-49001147	MsaT027621.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	48999452	49001901	48999452	ID=MsaG027621
Chr5	mRNA	48999452	49001901	48999452	ID=MsaT027621.1;Parent=MsaG027621
Chr5	exon	48999452	48999625	48999452	ID=MsaT027621.1.exon8;Parent=MsaT027621.1
Chr5	CDS	48999452	48999625	48999452	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	48999806	49000033	48999806	ID=MsaT027621.1.exon7;Parent=MsaT027621.1
Chr5	CDS	48999806	49000033	48999806	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49000452	49000723	49000452	ID=MsaT027621.1.exon6;Parent=MsaT027621.1
Chr5	CDS	49000452	49000723	49000452	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49000802	49000865	49000802	ID=MsaT027621.1.exon5;Parent=MsaT027621.1
Chr5	CDS	49000802	49000865	49000802	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49000967	49001044	49000967	ID=MsaT027621.1.exon4;Parent=MsaT027621.1
Chr5	CDS	49000967	49001044	49000967	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49001118	49001177	49001118	ID=MsaT027621.1.exon3;Parent=MsaT027621.1
Chr5	CDS	49001118	49001177	49001118	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49001558	49001632	49001558	ID=MsaT027621.1.exon2;Parent=MsaT027621.1
Chr5	CDS	49001558	49001632	49001558	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49001731	49001901	49001731	ID=MsaT027621.1.exon1;Parent=MsaT027621.1
Chr5	CDS	49001731	49001901	49001731	ID=cds.MsaT027621.1;Parent=MsaT027621.1

Gene Sequence

>MsaT027621.1

ATGAACTCTTCTTCATCATCAACTCAACTAATCGCGCCGAAAAGGATGAACATGTATGAGCCATTCCTTCAAGTGACTATGTGGGAGGATAGCTTTAAAGTTGATCATAGTACTTTGAATTCAATTGCTTCCCCAATGTTGAAGATGAACATAAGTAGCATGGAGAACAAGTCTGAATGTATCCCTCAAGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTATTCAAGAACCTGTTCCTAAGGTACTACGACGTCAAGCACAGAATCGCGCGGCTGCTCGAAAATGTCGGCTGCGAAAAAAGGCTTATGTTCAACAACTGGAAACGAGTAGATTGAAGCTCATGCAGTTGGAATTAGATATCGAGAAAACAAGAAAACAGGGTTTATACAGAAACAGTTTATTGGATGTCGGTTATATGGGAACGTCCGGAACAATAAACTCAGGGATATCTTTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCAACAAAACGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACATCTTCATCTACTTGTCGAGAGTAGGTTGAACCAATACTCAAATCTTTTTCAAATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCTGGCGTATGGAAATCACCGGTCGAACGCCTTTTTCTTTGGATAGGAGGATCTCGTCCATCACAAATTCTAAATATCGTGGTACCGAAACTTGAGAATTTGAATGATCAACAAATTGCTAGCATTAACAACCTGCGTTTATCATCTCAGCAAGCTGAAGATGCACTGTCAATAGGGTTGGAGAAACTCCAGCAGAGTATGATCAACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGCTTTCAGATGGCTGCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATTCAGGCAGATCACCTTAGGCAACAAACTCTGTTATACATGTCACGCATCTTATCAATTGGTCAAGCTGCTCAAGGCTTGTTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTTCATGTCACCATTTCTACCCTACTCAACACTCAAATTAA

Protein sequence

>MsaT027621.1

MNSSSSSTQLIAPKRMNMYEPFLQVTMWEDSFKVDHSTLNSIASPMLKMNISSMENKSECIPQESREPSGDDQETIQEPVPKVLRRQAQNRAAARKCRLRKKAYVQQLETSRLKLMQLELDIEKTRKQGLYRNSLLDVGYMGTSGTINSGISLFEIEYGRWIEEQDQQNEELRNALQTNASDIHLHLLVESRLNQYSNLFQMKAEAAKADVFYLISGVWKSPVERLFLWIGGSRPSQILNIVVPKLENLNDQQIASINNLRLSSQQAEDALSIGLEKLQQSMINNIQADPLDFGNYGFQMAAAMDKGEAVEGFVIQADHLRQQTLLYMSRILSIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYPTQHSN*