AlfalfaGEDB | MsaG027621

M. sativa ssp. caerulea / MsaG027621

KEGG: K14431
GO: GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	XP_003614897.2	96.648	358	12	0	16	373	1	358	0.0	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	sp\|Q93ZE2\|TGA7_ARATH	52.785	377	148	6	1	361	1	363	6.68e-122	359

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	tr\|G7K933\|G7K933_MEDTR	96.648	358	12	0	16	373	1	358	0.0	723

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TFs/TRs:

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Gene ID	Type	Classification
MsaG027621	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG027621	0.808158	6.048585e-50	9.880628e-48
MsaG000139	MsaG027621	0.813043	5.380955e-51	9.903332e-49
MsaG000142	MsaG027621	0.862053	1.315947e-63	1.106720e-60
MsaG000325	MsaG027621	0.867453	2.727459e-65	2.844526e-62
MsaG000467	MsaG027621	0.803432	5.885804e-49	8.604708e-47
MsaG000648	MsaG027621	0.812065	8.783295e-51	1.577617e-48
MsaG001138	MsaG027621	0.805969	1.748823e-49	2.711914e-47
MsaG002137	MsaG027621	0.805008	2.775430e-49	4.208508e-47
MsaG002481	MsaG027621	0.830187	6.080940e-55	1.769296e-52
MsaG002885	MsaG027621	0.825960	6.268986e-54	1.619466e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	MtrunA17_Chr5g0424861	96.379	359	12	1	16	373	1	359	0.0	719
MsaG027621	MtrunA17_Chr3g0115371	65.143	350	114	4	16	361	1	346	1.05e-157	447
MsaG027621	MtrunA17_Chr5g0424851	80.603	232	44	1	141	371	1	232	3.35e-131	382
MsaG027621	MtrunA17_Chr5g0424851	74.882	211	53	0	146	356	220	430	9.68e-109	325
MsaG027621	MtrunA17_Chr3g0124601	49.587	363	172	3	4	361	2	358	2.71e-117	344
MsaG027621	MtrunA17_Chr8g0382861	47.126	348	177	4	14	361	13	353	2.23e-99	298
MsaG027621	MtrunA17_Chr8g0353501	51.568	287	128	2	82	361	181	463	1.26e-89	277
MsaG027621	MtrunA17_Chr7g0256211	50.871	287	130	3	82	361	167	449	7.33e-89	275
MsaG027621	MtrunA17_Chr2g0321431	51.429	280	129	2	82	361	194	466	7.59e-89	276
MsaG027621	MtrunA17_Chr7g0258321	47.020	302	149	3	69	361	161	460	4.79e-88	273

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027621	AT1G77920.1	52.785	377	148	6	1	361	1	363	6.79e-123	359
MsaG027621	AT1G22070.1	50.538	372	159	4	14	365	17	383	8.01e-118	347
MsaG027621	AT5G10030.5	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.3	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.1	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.4	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G10030.2	50.416	361	173	3	4	361	2	359	8.59e-116	341
MsaG027621	AT5G65210.5	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.7	48.919	370	182	4	4	369	2	368	3.07e-115	340
MsaG027621	AT5G65210.3	48.919	370	182	4	4	369	2	368	3.07e-115	340

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Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTTCTCTTGATTCTTGA+GGG	0.435161	5:+49001599	None:intergenic
AATGAAAGCAGAAGCTGCAA+AGG	0.554661	5:-49000547	MsaT027621.1:CDS
ACAGGCTTATGTTCAACAAC+TGG	0.406023	5:-49001026	MsaT027621.1:intron
ACGTCAAGCACAGAATCGCG+CGG	0.719929	5:-49001147	MsaT027621.1:CDS
ACGTCCGGAACAATAAACTC+AGG	0.666698	5:-49000801	MsaT027621.1:intron
AGAAACAGTTTATTGGATGT+CGG	0.555658	5:-49000834	MsaT027621.1:CDS
AGATGCACTGTCAATAGGGT+TGG	0.527361	5:-48999928	MsaT027621.1:CDS
AGTGTTGAGTAGGGTAGAAA+TGG	0.460652	5:+48999460	None:intergenic
ATAACAGAGTTTGTTGCCTA+AGG	0.529419	5:+48999595	None:intergenic
ATCCTCCTATCCAAAGAAAA+AGG	0.354680	5:+49000475	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	48999452	49001901	48999452	ID=MsaG027621
Chr5	mRNA	48999452	49001901	48999452	ID=MsaT027621.1;Parent=MsaG027621
Chr5	exon	48999452	48999625	48999452	ID=MsaT027621.1.exon8;Parent=MsaT027621.1
Chr5	CDS	48999452	48999625	48999452	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	48999806	49000033	48999806	ID=MsaT027621.1.exon7;Parent=MsaT027621.1
Chr5	CDS	48999806	49000033	48999806	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49000452	49000723	49000452	ID=MsaT027621.1.exon6;Parent=MsaT027621.1
Chr5	CDS	49000452	49000723	49000452	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49000802	49000865	49000802	ID=MsaT027621.1.exon5;Parent=MsaT027621.1
Chr5	CDS	49000802	49000865	49000802	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49000967	49001044	49000967	ID=MsaT027621.1.exon4;Parent=MsaT027621.1
Chr5	CDS	49000967	49001044	49000967	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49001118	49001177	49001118	ID=MsaT027621.1.exon3;Parent=MsaT027621.1
Chr5	CDS	49001118	49001177	49001118	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49001558	49001632	49001558	ID=MsaT027621.1.exon2;Parent=MsaT027621.1
Chr5	CDS	49001558	49001632	49001558	ID=cds.MsaT027621.1;Parent=MsaT027621.1
Chr5	exon	49001731	49001901	49001731	ID=MsaT027621.1.exon1;Parent=MsaT027621.1
Chr5	CDS	49001731	49001901	49001731	ID=cds.MsaT027621.1;Parent=MsaT027621.1

Gene Sequence

>MsaT027621.1

ATGAACTCTTCTTCATCATCAACTCAACTAATCGCGCCGAAAAGGATGAACATGTATGAGCCATTCCTTCAAGTGACTATGTGGGAGGATAGCTTTAAAGTTGATCATAGTACTTTGAATTCAATTGCTTCCCCAATGTTGAAGATGAACATAAGTAGCATGGAGAACAAGTCTGAATGTATCCCTCAAGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTATTCAAGAACCTGTTCCTAAGGTACTACGACGTCAAGCACAGAATCGCGCGGCTGCTCGAAAATGTCGGCTGCGAAAAAAGGCTTATGTTCAACAACTGGAAACGAGTAGATTGAAGCTCATGCAGTTGGAATTAGATATCGAGAAAACAAGAAAACAGGGTTTATACAGAAACAGTTTATTGGATGTCGGTTATATGGGAACGTCCGGAACAATAAACTCAGGGATATCTTTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCAACAAAACGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACATCTTCATCTACTTGTCGAGAGTAGGTTGAACCAATACTCAAATCTTTTTCAAATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCTGGCGTATGGAAATCACCGGTCGAACGCCTTTTTCTTTGGATAGGAGGATCTCGTCCATCACAAATTCTAAATATCGTGGTACCGAAACTTGAGAATTTGAATGATCAACAAATTGCTAGCATTAACAACCTGCGTTTATCATCTCAGCAAGCTGAAGATGCACTGTCAATAGGGTTGGAGAAACTCCAGCAGAGTATGATCAACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGCTTTCAGATGGCTGCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATTCAGGCAGATCACCTTAGGCAACAAACTCTGTTATACATGTCACGCATCTTATCAATTGGTCAAGCTGCTCAAGGCTTGTTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTTCATGTCACCATTTCTACCCTACTCAACACTCAAATTAA

Protein sequence

>MsaT027621.1

MNSSSSSTQLIAPKRMNMYEPFLQVTMWEDSFKVDHSTLNSIASPMLKMNISSMENKSECIPQESREPSGDDQETIQEPVPKVLRRQAQNRAAARKCRLRKKAYVQQLETSRLKLMQLELDIEKTRKQGLYRNSLLDVGYMGTSGTINSGISLFEIEYGRWIEEQDQQNEELRNALQTNASDIHLHLLVESRLNQYSNLFQMKAEAAKADVFYLISGVWKSPVERLFLWIGGSRPSQILNIVVPKLENLNDQQIASINNLRLSSQQAEDALSIGLEKLQQSMINNIQADPLDFGNYGFQMAAAMDKGEAVEGFVIQADHLRQQTLLYMSRILSIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYPTQHSN*