AlfalfaGEDB | MsaG027623

M. sativa ssp. caerulea / MsaG027623

KEGG: K14432
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027623	XP_003614899.2	73.709	213	7	1	1	164	1	213	3.77e-95	286

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027623	sp\|Q9LES3\|AI5L2_ARATH	32.195	205	95	6	1	185	88	268	2.43e-18	83.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027623	tr\|G7K935\|G7K935_MEDTR	73.709	213	7	1	1	164	85	297	8.28e-95	287

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TFs/TRs:

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Gene ID	Type	Classification
MsaG027623	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027623	MtrunA17_Chr5g0424871	73.709	213	7	1	1	164	85	297	1.59e-98	287
MsaG027623	MtrunA17_Chr8g0355121	33.333	198	103	6	4	185	100	284	3.56e-20	85.9
MsaG027623	MtrunA17_Chr7g0254991	31.132	212	110	7	1	187	93	293	1.68e-19	84.0
MsaG027623	MtrunA17_Chr3g0080341	30.144	209	114	8	1	185	93	293	5.87e-18	79.7
MsaG027623	MtrunA17_Chr2g0321411	31.771	192	104	7	1	185	81	252	4.93e-15	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027623	AT2G41070.5	34.375	192	94	6	1	188	73	236	1.75e-19	83.2
MsaG027623	AT3G56850.1	32.195	205	95	6	1	185	88	268	2.47e-19	83.6
MsaG027623	AT2G41070.3	34.375	192	94	6	1	188	73	236	3.04e-19	82.8
MsaG027623	AT2G41070.1	34.375	192	94	6	1	188	73	236	3.04e-19	82.8
MsaG027623	AT2G41070.2	34.375	192	94	6	1	188	73	236	3.04e-19	82.8
MsaG027623	AT2G41070.4	34.375	192	94	6	1	188	82	245	3.07e-19	82.8
MsaG027623	AT2G36270.3	29.150	247	113	8	1	185	152	398	7.52e-13	66.2
MsaG027623	AT2G36270.1	29.150	247	113	8	1	185	152	398	8.50e-13	66.2
MsaG027623	AT2G36270.2	29.150	247	113	8	1	185	152	398	8.50e-13	66.2
MsaG027623	AT4G34000.3	55.172	58	25	1	128	185	359	415	7.78e-11	60.5

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Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGAGGTGCTGGTGGAAG+CGG	0.452209	5:+49048397	MsaT027623.1:CDS
AATGTTGGGAGAAACAACTT+TGG	0.520689	5:+49048003	MsaT027623.1:CDS
AATTTGCAACAATCAATGTT+GGG	0.488793	5:+49047989	MsaT027623.1:CDS
ACAAAACCATCAATGAGGTA+TGG	0.522632	5:+49047918	MsaT027623.1:CDS
ACACATAAATAAGTTACAGA+TGG	0.576179	5:+49048643	MsaT027623.1:CDS
ACAGATGGACAAATTTCAGT+TGG	0.521534	5:+49048658	MsaT027623.1:CDS
ACATGTTCAGATTCAAAGGG+AGG	0.661738	5:+49048382	MsaT027623.1:CDS
AGATTTCGGTGTTGCAAATT+CGG	0.363775	5:+49048285	MsaT027623.1:intron
AGTTGAACCAAATTTGGTCA+TGG	0.554386	5:+49048117	MsaT027623.1:CDS
ATCTACATGTTCAGATTCAA+AGG	0.498171	5:+49048378	MsaT027623.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	49047911	49048712	49047911	ID=MsaG027623
Chr5	mRNA	49047911	49048712	49047911	ID=MsaT027623.1;Parent=MsaG027623
Chr5	exon	49047911	49048154	49047911	ID=MsaT027623.1.exon1;Parent=MsaT027623.1
Chr5	CDS	49047911	49048154	49047911	ID=cds.MsaT027623.1;Parent=MsaT027623.1
Chr5	exon	49048287	49048534	49048287	ID=MsaT027623.1.exon2;Parent=MsaT027623.1
Chr5	CDS	49048287	49048534	49048287	ID=cds.MsaT027623.1;Parent=MsaT027623.1
Chr5	exon	49048641	49048712	49048641	ID=MsaT027623.1.exon3;Parent=MsaT027623.1
Chr5	CDS	49048641	49048712	49048641	ID=cds.MsaT027623.1;Parent=MsaT027623.1

Gene Sequence

>MsaT027623.1

ATGTGTAACAAAACCATCAATGAGGTATGGAGTGAGATTAACCAACAAAAAAATGTAATTGGGTCAATGGATCATAACAATTTGCAACAATCAATGTTGGGAGAAACAACTTTGGATAATTTTCTTGCACATGCTAAGGCTATTAATATTGGAAATCAAGAAAATGTTCATGCTATTGGTGATGAAACTCAAGTTCCATTTATTGGAGTTGAACCAAATTTGGTCATGGCTTCACAGCCAGAAGATTTCGGTGTTGCAAATTCGGTTTATGAGAACAAACTTATGGAAATTGGTTACTCAGAAATACCAATCGGGGCAACGACAACACATTTATCATCTACATGTTCAGATTCAAAGGGAGGTGCTGGTGGAAGCGGCGTTGGAAGGAAGCACAAGTATTCAGATGAGATGATGGAAAAGACTATTGAGAGGAGGCAGAAGCGAATGGCGAAGAACCGCGAATCTGCTGCGAGATCAAGGGCAAAGAAACAGGAACACATAAATAAGTTACAGATGGACAAATTTCAGTTGGAGAAAAAAAATACCGAACTCAAATTGATAAAG

Protein sequence

>MsaT027623.1

MCNKTINEVWSEINQQKNVIGSMDHNNLQQSMLGETTLDNFLAHAKAINIGNQENVHAIGDETQVPFIGVEPNLVMASQPEDFGVANSVYENKLMEIGYSEIPIGATTTHLSSTCSDSKGGAGGSGVGRKHKYSDEMMEKTIERRQKRMAKNRESAARSRAKKQEHINKLQMDKFQLEKKNTELKLIK