AlfalfaGEDB | MsaG027627

KEGG: -
GO: -
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
MsaG027627	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG027627	0.805961	1.755619e-49	2.721910e-47
MsaG000236	MsaG027627	0.810446	1.964609e-50	3.391767e-48
MsaG000837	MsaG027627	0.843466	2.570339e-58	1.120332e-55
MsaG000843	MsaG027627	0.827928	2.132398e-54	5.819666e-52
MsaG001169	MsaG027627	0.807667	7.681568e-50	1.240095e-47
MsaG001894	MsaG027627	0.815118	1.884713e-51	3.654012e-49
MsaG002237	MsaG027627	0.810566	1.851242e-50	3.205316e-48
MsaG002286	MsaG027627	0.806022	1.704260e-49	2.646135e-47
MsaG002350	MsaG027627	0.852216	1.022709e-60	5.986041e-58
MsaG002575	MsaG027627	0.808678	4.690418e-50	7.758815e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Find 11 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACACATAAATAAGTTACAGA+TGG	0.576179	5:-49088773	MsaT027627.1:CDS
ACAGATGGACAAATTTCAGT+TGG	0.521534	5:-49088758	MsaT027627.1:CDS
CACTACCTACATCAGATTCT+CGG	0.442070	5:+49088555	None:intergenic
CGAATCTGCTGCGAGATCAA+GGG	0.577446	5:-49088915	MsaT027627.1:CDS
GAGATCAAGGGCAAAGAAAC+AGG	0.423260	5:-49088903	MsaT027627.1:intron
GCGAATCTGCTGCGAGATCA+AGG	0.428490	5:-49088916	MsaT027627.1:CDS
TACATCAGATTCTCGGCAAC+AGG	0.398712	5:+49088562	None:intergenic
TACCGAACTCAAATTGATAA+AGG	0.388384	5:-49088725	MsaT027627.1:intron
TACCTTTATCAATTTGAGTT+CGG	0.422062	5:+49088723	None:intergenic
TGTTGCCGAGAATCTGATGT+AGG	0.606616	5:-49088560	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	49088561	49088951	49088561	ID=MsaG027627
Chr5	mRNA	49088561	49088951	49088561	ID=MsaT027627.1;Parent=MsaG027627
Chr5	exon	49088561	49088590	49088561	ID=MsaT027627.1.exon3;Parent=MsaT027627.1
Chr5	CDS	49088561	49088590	49088561	ID=cds.MsaT027627.1;Parent=MsaT027627.1
Chr5	exon	49088726	49088797	49088726	ID=MsaT027627.1.exon2;Parent=MsaT027627.1
Chr5	CDS	49088726	49088797	49088726	ID=cds.MsaT027627.1;Parent=MsaT027627.1
Chr5	exon	49088904	49088951	49088904	ID=MsaT027627.1.exon1;Parent=MsaT027627.1
Chr5	CDS	49088904	49088951	49088904	ID=cds.MsaT027627.1;Parent=MsaT027627.1

Gene Sequence	>MsaT027627.1 ATGGCGAAGAACCGCGAATCTGCTGCGAGATCAAGGGCAAAGAAACAGGAACACATAAATAAGTTACAGATGGACAAATTTCAGTTGGAGAAAAAAAATACCGAACTCAAATTGATAAAGGAGATTCCTGTTGCCGAGAATCTGATGTAG
Protein sequence	>MsaT027627.1 MAKNRESAARSRAKKQEHINKLQMDKFQLEKKNTELKLIKEIPVAENLM*

M. sativa ssp. caerulea / MsaG027627