AlfalfaGEDB | MsaG027636

M. sativa ssp. caerulea / MsaG027636

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027636	AES97927.2	64.373	407	105	7	1	396	9	386	2.02e-164	478

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027636	sp\|Q84WU6\|ARFQ_ARATH	35.405	370	179	10	1	317	16	378	1.98e-61	211

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027636	tr\|G7KA25\|G7KA25_MEDTR	64.373	407	105	7	1	396	9	386	9.67e-165	478

TFs/TRs:

Gene ID	Type	Classification
MsaG027636	TF	B3-ARF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003946	MsaG027636	0.864472	2.365730e-64	2.188466e-61
MsaG005188	MsaG027636	0.807246	9.427189e-50	1.506637e-47
MsaG005642	MsaG027636	0.839764	2.407082e-57	9.327053e-55
MsaG005811	MsaG027636	0.877481	1.268989e-68	2.039557e-65
MsaG006084	MsaG027636	0.841633	7.837342e-58	3.221168e-55
MsaG006175	MsaG027636	0.800223	2.664737e-48	3.620969e-46
MsaG006561	MsaG027636	0.838525	5.025255e-57	1.873331e-54
MsaG007880	MsaG027636	0.837755	7.914796e-57	2.880995e-54
MsaG007716	MsaG027636	0.804195	4.092410e-49	6.089744e-47
MsaG010533	MsaG027636	0.837426	9.601838e-57	3.460291e-54
MsaG011123	MsaG027636	0.850370	3.379078e-60	1.854691e-57
MsaG011441	MsaG027636	0.830287	5.748798e-55	1.677469e-52
MsaG012418	MsaG027636	0.831002	3.850765e-55	1.146866e-52
MsaG045596	MsaG027636	0.801309	1.603059e-48	2.232428e-46
MsaG046512	MsaG027636	0.822572	3.887479e-53	9.154719e-51
MsaG046656	MsaG027636	0.844575	1.300435e-58	5.875866e-56
MsaG046807	MsaG027636	0.811781	1.011866e-50	1.804912e-48
MsaG002242	MsaG027636	0.836266	1.891961e-56	6.582955e-54
MsaG004907	MsaG027636	0.830856	4.179305e-55	1.239528e-52
MsaG019142	MsaG027636	0.801893	1.218332e-48	1.719383e-46
MsaG027636	MsaG043490	0.801244	1.652678e-48	2.298105e-46
MsaG014096	MsaG027636	0.841350	9.293684e-58	3.785582e-55
MsaG014105	MsaG027636	0.866986	3.837308e-65	3.928206e-62
MsaG014272	MsaG027636	0.819057	2.477610e-52	5.315583e-50
MsaG014760	MsaG027636	0.807903	6.848527e-50	1.111943e-47
MsaG014762	MsaG027636	0.811387	1.231461e-50	2.175474e-48
MsaG015978	MsaG027636	0.820597	1.106292e-52	2.471768e-50
MsaG017058	MsaG027636	0.845120	9.285560e-59	4.271599e-56
MsaG017173	MsaG027636	0.807920	6.791128e-50	1.103090e-47
MsaG017251	MsaG027636	0.812959	5.613781e-51	1.030986e-48
MsaG017896	MsaG027636	0.834128	6.513743e-56	2.125623e-53
MsaG017966	MsaG027636	0.815590	1.481286e-51	2.906548e-49
MsaG018372	MsaG027636	0.814863	2.144726e-51	4.131694e-49
MsaG018791	MsaG027636	0.807782	7.263366e-50	1.175852e-47
MsaG019943	MsaG027636	0.807735	7.432499e-50	1.201865e-47
MsaG019982	MsaG027636	0.878152	7.416964e-69	1.229362e-65
MsaG029484	MsaG027636	0.804476	3.579055e-49	5.360430e-47
MsaG029593	MsaG027636	0.806403	1.418417e-49	2.222329e-47
MsaG038016	MsaG027636	0.841611	7.940864e-58	3.261489e-55
MsaG040612	MsaG027636	0.801773	1.289158e-48	1.814299e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027636	MtrunA17_Chr5g0425261	71.429	343	87	5	1	332	9	351	6.73e-166	470
MsaG027636	MtrunA17_Chr5g0424801	70.845	343	89	5	1	332	9	351	7.23e-163	462
MsaG027636	MtrunA17_Chr5g0424931	56.215	354	113	8	3	317	18	368	3.02e-124	370
MsaG027636	MtrunA17_Chr5g0424741	55.496	373	118	6	1	326	9	380	4.55e-124	369
MsaG027636	MtrunA17_Chr1g0178011	57.143	336	120	8	1	317	9	339	1.68e-119	355
MsaG027636	MtrunA17_Chr2g0289221	51.911	314	124	9	1	296	17	321	2.61e-94	287
MsaG027636	MtrunA17_Chr5g0417281	49.398	332	144	9	1	316	8	331	5.27e-91	284
MsaG027636	MtrunA17_Chr5g0436761	44.675	338	157	10	1	317	9	337	6.89e-83	261
MsaG027636	MtrunA17_Chr2g0277461	46.608	339	155	10	4	323	13	344	9.38e-83	261
MsaG027636	MtrunA17_Chr5g0417211	48.889	315	133	9	1	296	9	314	4.36e-79	250
MsaG027636	MtrunA17_Chr2g0277531	44.660	309	145	9	4	296	20	318	1.90e-74	235
MsaG027636	MtrunA17_Chr5g0425661	57.071	198	63	7	3	183	36	228	3.51e-62	201
MsaG027636	MtrunA17_Chr3g0115271	37.333	375	168	12	1	317	16	381	1.51e-58	201
MsaG027636	MtrunA17_Chr2g0326761	34.565	379	176	13	1	317	8	376	1.62e-53	189
MsaG027636	MtrunA17_Chr1g0181211	34.109	387	186	10	1	322	24	406	2.88e-53	188
MsaG027636	MtrunA17_Chr5g0424791	65.714	140	44	2	53	188	12	151	3.68e-50	166
MsaG027636	MtrunA17_Chr1g0199681	33.850	387	176	14	1	321	91	463	4.65e-50	179
MsaG027636	MtrunA17_Chr4g0028971	34.103	390	178	12	1	321	9	388	3.28e-48	174
MsaG027636	MtrunA17_Chr7g0264171	30.864	405	185	14	1	325	28	417	1.62e-45	166
MsaG027636	MtrunA17_Chr2g0276781	32.967	364	187	14	4	332	23	364	5.87e-39	148
MsaG027636	MtrunA17_Chr7g0264161	32.131	305	165	9	14	291	2	291	8.84e-39	141
MsaG027636	MtrunA17_Chr2g0285461	32.877	365	191	16	1	324	20	371	1.84e-36	142
MsaG027636	MtrunA17_Chr1g0156321	31.105	344	202	10	1	316	40	376	4.80e-36	140
MsaG027636	MtrunA17_Chr8g0376771	32.055	365	193	15	1	324	20	370	1.60e-35	139
MsaG027636	MtrunA17_Chr2g0282961	30.259	347	196	13	4	316	53	387	2.34e-35	137
MsaG027636	MtrunA17_Chr8g0385791	31.594	345	208	11	4	324	59	399	2.23e-34	135
MsaG027636	MtrunA17_Chr5g0433301	31.445	353	190	15	1	316	21	358	2.25e-33	132
MsaG027636	MtrunA17_Chr4g0046371	30.874	366	199	14	4	332	38	386	3.24e-33	132
MsaG027636	MtrunA17_Chr2g0326281	30.151	398	215	13	4	349	56	442	4.30e-33	132
MsaG027636	MtrunA17_Chr2g0301251	31.105	344	201	12	1	316	20	355	8.19e-33	131
MsaG027636	MtrunA17_Chr3g0109391	30.398	352	195	14	1	316	23	360	4.07e-32	129
MsaG027636	MtrunA17_Chr5g0425651	55.357	112	46	2	211	319	1	111	4.49e-32	118
MsaG027636	MtrunA17_Chr4g0009751	30.028	363	213	14	2	336	17	366	5.71e-32	128
MsaG027636	MtrunA17_Chr7g0239061	29.683	347	194	13	4	316	14	344	3.00e-31	126
MsaG027636	MtrunA17_Chr4g0070181	30.814	344	202	13	1	316	20	355	1.08e-30	125
MsaG027636	MtrunA17_Chr8g0346711	30.372	349	212	14	4	331	29	367	2.95e-30	123
MsaG027636	MtrunA17_Chr4g0029671	29.609	358	218	10	4	329	54	409	3.10e-28	117
MsaG027636	MtrunA17_Chr8g0389081	29.745	353	196	11	1	316	29	366	8.95e-28	116
MsaG027636	MtrunA17_Chr8g0356211	26.638	229	136	9	110	316	2	220	1.92e-12	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027636	AT1G77850.2	35.405	370	179	10	1	317	16	378	1.33e-62	212
MsaG027636	AT1G77850.1	35.405	370	179	10	1	317	16	378	2.02e-62	211
MsaG027636	AT4G30080.1	34.606	393	181	14	1	328	16	397	1.97e-52	186
MsaG027636	AT2G28350.1	33.000	400	170	16	1	321	7	387	2.98e-45	166
MsaG027636	AT2G28350.2	33.250	400	169	17	1	321	7	387	3.44e-45	166
MsaG027636	AT2G46530.3	31.768	362	207	13	3	336	41	390	3.37e-41	154
MsaG027636	AT2G46530.1	32.320	362	205	14	3	336	20	369	4.63e-41	154
MsaG027636	AT3G61830.1	32.295	353	198	14	3	326	24	364	5.10e-40	151
MsaG027636	AT5G37020.2	31.461	356	186	16	1	316	19	356	2.86e-36	141
MsaG027636	AT5G37020.1	31.461	356	186	16	1	316	19	356	3.46e-36	141
MsaG027636	AT1G59750.4	32.065	368	215	13	4	347	22	378	1.52e-35	139
MsaG027636	AT1G59750.1	32.065	368	215	13	4	347	22	378	1.82e-35	139
MsaG027636	AT1G59750.3	32.065	368	215	13	4	347	22	378	1.82e-35	139
MsaG027636	AT1G59750.2	32.065	368	215	13	4	347	22	378	1.97e-35	138
MsaG027636	AT2G33860.1	32.286	350	185	15	4	316	54	388	4.42e-35	137
MsaG027636	AT1G30330.3	31.593	364	197	14	1	324	22	373	5.55e-35	138
MsaG027636	AT1G30330.2	31.593	364	197	14	1	324	22	373	5.55e-35	138
MsaG027636	AT1G30330.1	31.593	364	197	14	1	324	20	371	6.26e-35	137
MsaG027636	AT1G19850.1	31.232	349	196	12	1	316	51	388	6.64e-33	132
MsaG027636	AT1G19850.2	31.232	349	196	12	1	316	40	377	8.01e-33	131
MsaG027636	AT5G62000.4	29.830	352	207	10	4	325	61	402	2.57e-32	130
MsaG027636	AT5G62000.2	29.830	352	207	10	4	325	61	402	2.86e-32	130
MsaG027636	AT5G62000.5	29.830	352	207	10	4	325	61	402	2.86e-32	130
MsaG027636	AT5G62000.3	29.830	352	207	10	4	325	61	402	2.86e-32	130
MsaG027636	AT5G62000.1	29.830	352	207	10	4	325	61	402	2.86e-32	130
MsaG027636	AT1G34390.1	30.319	376	208	14	1	338	24	383	4.51e-32	128
MsaG027636	AT1G35520.1	29.268	410	237	15	1	381	24	409	1.60e-31	127
MsaG027636	AT1G34410.1	28.851	409	238	15	1	380	24	408	3.76e-31	125
MsaG027636	AT4G23980.1	29.096	354	201	13	4	321	12	351	6.59e-31	125
MsaG027636	AT4G23980.2	29.096	354	201	13	4	321	12	351	6.60e-31	125
MsaG027636	AT5G60450.2	29.759	373	231	11	3	346	40	410	9.96e-31	125
MsaG027636	AT5G60450.1	29.759	373	231	11	3	346	64	434	1.02e-30	125
MsaG027636	AT1G35240.1	31.304	345	192	14	1	316	24	352	1.77e-30	124
MsaG027636	AT1G35540.1	30.205	341	201	12	1	316	24	352	3.21e-30	123
MsaG027636	AT1G19220.1	29.640	361	205	14	1	324	20	368	6.44e-30	123
MsaG027636	AT5G20730.3	30.725	345	202	13	1	316	21	357	1.11e-29	122
MsaG027636	AT5G20730.1	30.725	345	202	13	1	316	21	357	1.42e-29	122
MsaG027636	AT5G20730.2	30.814	344	202	13	1	316	21	356	1.43e-29	122
MsaG027636	AT1G34310.1	31.287	342	190	13	4	316	27	352	1.73e-29	120
MsaG027636	AT3G61830.2	30.990	313	179	13	39	326	13	313	1.17e-26	112
MsaG027636	AT1G34170.1	29.086	361	208	14	1	330	22	365	1.66e-26	111
MsaG027636	AT1G43950.1	33.333	207	114	7	1	191	24	222	6.00e-22	94.0
MsaG027636	AT1G34170.2	28.490	351	197	12	1	330	22	339	1.23e-21	97.1
MsaG027636	AT1G34170.3	28.490	351	197	12	1	330	22	339	1.66e-21	97.1
MsaG027636	AT2G46530.2	31.373	255	146	11	103	336	36	282	1.05e-20	94.7
MsaG027636	AT2G33860.2	31.250	240	128	11	104	316	2	231	2.42e-19	90.1
MsaG027636	AT5G37020.3	30.000	270	145	13	77	316	6	261	4.31e-18	87.0

Find 113 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTTCCATCGTCGTCTTCT+TGG	0.207983	5:-49325875	None:intergenic
ATAGTTAAATTTGAAGATTC+AGG	0.238302	5:-49326392	None:intergenic
ACCTTAAGCATGTGCCAATT+AGG	0.244625	5:-49326464	None:intergenic
CATTGAATGTGGAATTTGTT+GGG	0.253252	5:-49335270	None:intergenic
TAAACTTTAGAGTGAATCTT+TGG	0.260426	5:-49325648	None:intergenic
ATTCTTCTAATGTCCCTAAT+TGG	0.268826	5:+49326450	MsaT027636.1:CDS
TTGGCTCATTGGACCTATTA+TGG	0.290349	5:-49335370	None:intergenic
TCTTGAGACTTCTGCAACTC+TGG	0.293011	5:-49325984	None:intergenic
ATGGTGATTGTGGCAGCATT+AGG	0.295879	5:-49325711	None:intergenic
TCACTTGGTGCTTGGCTCAT+TGG	0.308376	5:-49335381	None:intergenic
CTTGGTCTGTTACGGGAGTT+AGG	0.314595	5:-49325827	None:intergenic
CTACTTCCCACAAGGTCATT+TGG	0.318755	5:+49325671	MsaT027636.1:CDS
CGTTGCTTCATAACCATAAT+AGG	0.329182	5:+49335357	MsaT027636.1:CDS
ATGAAGATTGGTTGGAAATC+TGG	0.337904	5:+49326341	MsaT027636.1:CDS
TCTTCAAATTTAACTATAAG+AGG	0.347983	5:+49326398	MsaT027636.1:CDS
TGGTGATTGTGGCAGCATTA+GGG	0.354813	5:-49325710	None:intergenic
AGCGCATTTCTGCCATAGTT+TGG	0.354882	5:-49325607	None:intergenic
GATGAAAACAACGGAATCTT+CGG	0.357948	5:-49326114	None:intergenic
ATTGGTCTGCAGTCACAATT+AGG	0.358018	5:+49335421	MsaT027636.1:CDS
TTCTCACCTCTTTCAGCTGC+AGG	0.358959	5:-49326188	None:intergenic
GAGGGCAAAGCTTCGTTTGA+TGG	0.363032	5:+49326367	MsaT027636.1:CDS
GTCTCTGTCACTGACCTTCC+AGG	0.363192	5:+49326008	MsaT027636.1:CDS
CCACAGGAGGAGGAGGTTCT+TGG	0.364923	5:-49325845	None:intergenic
GCCACAATCACCATTCTTGA+TGG	0.366631	5:+49325720	MsaT027636.1:CDS
ATTAACTGAGAGTGCGGTCT+TGG	0.368633	5:+49326211	MsaT027636.1:CDS
AGGTATCTTCATTGGCATAT+TGG	0.368638	5:+49335403	MsaT027636.1:CDS
AGGAGGTTCTTGGTCTGTTA+CGG	0.370719	5:-49325835	None:intergenic
CCTTAAGCATGTGCCAATTA+GGG	0.381506	5:-49326463	None:intergenic
CCATTGAATGTGGAATTTGT+TGG	0.382992	5:-49335271	None:intergenic
AGATTTCCAACCAATCTTCA+TGG	0.383662	5:-49326339	None:intergenic
ATGAAAACAACGGAATCTTC+GGG	0.384466	5:-49326113	None:intergenic
ACACAAACTGATACTAAATC+TGG	0.395790	5:+49325924	MsaT027636.1:CDS
GGAGGTTCTTGGTCTGTTAC+GGG	0.397553	5:-49325834	None:intergenic
CCCTAATTGGCACATGCTTA+AGG	0.403221	5:+49326463	MsaT027636.1:CDS
GGTCTTGGGTGCAGTGGATT+TGG	0.411620	5:+49326226	MsaT027636.1:CDS
TTTATCCCACAGATGGGAAT+TGG	0.411809	5:+49326279	MsaT027636.1:CDS
CTCCTATGGACTCCAAACTA+TGG	0.424679	5:+49325595	None:intergenic
CCAAGGTTTGGCTATGTGTC+AGG	0.447799	5:-49335314	None:intergenic
TACGGGAGTTAGGAGCAGTT+TGG	0.451525	5:-49325817	None:intergenic
ATCTTTGGAATCTTGACGTC+GGG	0.453371	5:-49325633	None:intergenic
AGTGGAGTTGACGGTGGAGG+AGG	0.453428	5:-49335211	None:intergenic
ACCAAGTGAGGTATCTTCAT+TGG	0.464362	5:+49335395	MsaT027636.1:CDS
TTATCATAGGTTAACTGGGA+TGG	0.471984	5:+49335111	MsaT027636.1:intron
CCGTTAGGACTGCCAAGGTT+TGG	0.476008	5:-49335326	None:intergenic
TTAACTGAGAGTGCGGTCTT+GGG	0.478339	5:+49326212	MsaT027636.1:CDS
AACTTCCCTGCAGCTGAAAG+AGG	0.482726	5:+49326182	MsaT027636.1:CDS
ATCAAAACCTAGTCAATCCT+TGG	0.483973	5:+49335151	MsaT027636.1:CDS
CCAACAAATTCCACATTCAA+TGG	0.487436	5:+49335271	MsaT027636.1:CDS
GTATAGGTGTAGACTTTGCC+TGG	0.494583	5:-49326026	None:intergenic
CAAATTCCACATTCAATGGC+AGG	0.495396	5:+49335275	MsaT027636.1:CDS
GTAGATGATGCCATGAAGAT+TGG	0.497274	5:+49326329	MsaT027636.1:CDS
CATGGCATCATCTACAACCT+TGG	0.499201	5:-49326321	None:intergenic
CAACCTGCCAAGGATTGACT+AGG	0.503489	5:-49335158	None:intergenic
TTGTAAATTTCAACCTGCCA+AGG	0.507058	5:-49335168	None:intergenic
AAGATACCTCACTTGGTGCT+TGG	0.507669	5:-49335389	None:intergenic
TCTTCTTGGCCGTGAACCAC+AGG	0.514079	5:-49325861	None:intergenic
CCTCCTCCTCCTGTGGTTCA+CGG	0.519022	5:+49325852	MsaT027636.1:CDS
TGAAGTGGAGTTGACGGTGG+AGG	0.522452	5:-49335214	None:intergenic
AGGTGTAGACTTTGCCTGGA+AGG	0.536557	5:-49326022	None:intergenic
GATGAACTCTCAGCAAGTCT+AGG	0.537540	5:-49335245	None:intergenic
CTCGACCCTGCCATTGAATG+TGG	0.538653	5:-49335281	None:intergenic
TGGCCGTGAACCACAGGAGG+AGG	0.540091	5:-49325855	None:intergenic
CCATGCATCGTCTCTACTGT+TGG	0.543464	5:+49325759	MsaT027636.1:CDS
AAATATATGTCGGAATTCGC+AGG	0.543716	5:+49326153	MsaT027636.1:CDS
AAACCTAGTCAATCCTTGGC+AGG	0.546100	5:+49335155	MsaT027636.1:CDS
GAGACGATGCATGGAATGGA+TGG	0.546365	5:-49325750	None:intergenic
TTGGTTGGAAATCTGGAATG+AGG	0.547760	5:+49326348	MsaT027636.1:CDS
GAGGAGGAAGTCAAAGGTGC+AGG	0.548119	5:-49335195	None:intergenic
ATTGAATGTGGAATTTGTTG+GGG	0.553077	5:-49335269	None:intergenic
ATGATGCCATGAAGATTGGT+TGG	0.558711	5:+49326333	MsaT027636.1:CDS
CCGTGAACCACAGGAGGAGG+AGG	0.561880	5:-49325852	None:intergenic
GAGTGCGGTCTTGGGTGCAG+TGG	0.564030	5:+49326220	MsaT027636.1:CDS
AAACTATGGCAGAAATGCGC+TGG	0.567239	5:+49325609	MsaT027636.1:CDS
CCAAACCTTGGCAGTCCTAA+CGG	0.569882	5:+49335326	MsaT027636.1:CDS
ATTACACCAATTCCCATCTG+TGG	0.570163	5:-49326285	None:intergenic
AGTAGAGACGATGCATGGAA+TGG	0.572932	5:-49325754	None:intergenic
CCTGACACATAGCCAAACCT+TGG	0.575256	5:+49335314	MsaT027636.1:CDS
AAACAGAGTAGACTAACTAA+AGG	0.575699	5:+49326056	MsaT027636.1:CDS
TCTCACCTCTTTCAGCTGCA+GGG	0.578496	5:-49326187	None:intergenic
CATGTTCCAAATGACCTTGT+GGG	0.588081	5:-49325677	None:intergenic
GGTGATTGTGGCAGCATTAG+GGG	0.588227	5:-49325709	None:intergenic
TGGTTGGAAATCTGGAATGA+GGG	0.589287	5:+49326349	MsaT027636.1:CDS
TGGACGGTAACCATCAAGAA+TGG	0.589526	5:-49325730	None:intergenic
ACCATCAAGAATGGTGATTG+TGG	0.590838	5:-49325721	None:intergenic
CCAAGAACCTCCTCCTCCTG+TGG	0.595254	5:+49325845	MsaT027636.1:CDS
TTACACCAATTCCCATCTGT+GGG	0.595749	5:-49326284	None:intergenic
CATTCAATGGCAGGGTCGAG+TGG	0.596117	5:+49335284	MsaT027636.1:CDS
TTGTGTGAGAGTCTTGACAT+AGG	0.600208	5:-49325907	None:intergenic
TGCCATAGTTTGGAGTCCAT+AGG	0.605278	5:-49325597	None:intergenic
ATCAAGTCTGTGCATTGACG+AGG	0.606145	5:-49325957	None:intergenic
AGCAACGAGTCAGCACCGTT+AGG	0.608103	5:-49335341	None:intergenic
GCCAATGAAGATACCTCACT+TGG	0.608165	5:-49335396	None:intergenic
GCAAAGACCTCGTCGGTGTG+AGG	0.608714	5:-49325795	None:intergenic
TTGAATGTGGAATTTGTTGG+GGG	0.613056	5:-49335268	None:intergenic
CGATGCATGGAATGGATGGA+CGG	0.620709	5:-49325746	None:intergenic
CAGCACCGTTAGGACTGCCA+AGG	0.621363	5:-49335331	None:intergenic
AGAGTAGACTAACTAAAGGA+TGG	0.627717	5:+49326060	MsaT027636.1:CDS
AAATTCCACATTCAATGGCA+GGG	0.627736	5:+49335276	MsaT027636.1:CDS
TCTTGAAGTGGAGTTGACGG+TGG	0.627767	5:-49335217	None:intergenic
GCATGTTCCAAATGACCTTG+TGG	0.633704	5:-49325678	None:intergenic
TGAATGTGGAATTTGTTGGG+GGG	0.640994	5:-49335267	None:intergenic
AATCTTTGGAATCTTGACGT+CGG	0.641188	5:-49325634	None:intergenic
CCAACAGTAGAGACGATGCA+TGG	0.649094	5:-49325759	None:intergenic
TCTTGGCCGTGAACCACAGG+AGG	0.650102	5:-49325858	None:intergenic
AATGAGCCAAGCACCAAGTG+AGG	0.655123	5:+49335383	MsaT027636.1:CDS
TGTTGATCCTCACACCGACG+AGG	0.655379	5:+49325788	MsaT027636.1:CDS
CAGTTTGGCAAAGACCTCGT+CGG	0.663811	5:-49325802	None:intergenic
AAAGTTTACTACTTCCCACA+AGG	0.678948	5:+49325663	MsaT027636.1:CDS
ACGGTGGAGGAGGAAGTCAA+AGG	0.680164	5:-49335201	None:intergenic
TGAGAAATTAACTGAGAGTG+CGG	0.683957	5:+49326205	MsaT027636.1:CDS
TGAAAACAACGGAATCTTCG+GGG	0.698750	5:-49326112	None:intergenic
CACGGCCAAGAAGACGACGA+TGG	0.706758	5:+49325870	MsaT027636.1:CDS
GGATTTGGCTAACAAGAACG+TGG	0.730069	5:+49326241	MsaT027636.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	49325600	49335485	49325600	ID=MsaG027636
Chr5	mRNA	49325600	49335485	49325600	ID=MsaT027636.1;Parent=MsaG027636
Chr5	exon	49325600	49326484	49325600	ID=MsaT027636.1.exon1;Parent=MsaT027636.1
Chr5	CDS	49325600	49326484	49325600	ID=cds.MsaT027636.1;Parent=MsaT027636.1
Chr5	exon	49335120	49335485	49335120	ID=MsaT027636.1.exon2;Parent=MsaT027636.1
Chr5	CDS	49335120	49335485	49335120	ID=cds.MsaT027636.1;Parent=MsaT027636.1

Gene Sequence

>MsaT027636.1

ATGGACTCCAAACTATGGCAGAAATGCGCTGGTCCCGACGTCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCACAAGGTCATTTGGAACATGCATGTTCTTCCCCTAATGCTGCCACAATCACCATTCTTGATGGTTACCGTCCATCCATTCCATGCATCGTCTCTACTGTTGGTCTCTTTGTTGATCCTCACACCGACGAGGTCTTTGCCAAACTGCTCCTAACTCCCGTAACAGACCAAGAACCTCCTCCTCCTGTGGTTCACGGCCAAGAAGACGACGATGGAAACAATCTTGTTTCCTATGTCAAGACTCTCACACAAACTGATACTAAATCTGGATTCAATATGCCTCGTCAATGCACAGACTTGATCTTTCCAGAGTTGCAGAAGTCTCAAGAAGTCTCTGTCACTGACCTTCCAGGCAAAGTCTACACCTATACCTACTCAAAACAGAGTAGACTAACTAAAGGATGGTTTAATTTTGTAAGTGAGAAGAAACTCGTCCCCGAAGATTCCGTTGTTTTCATCAAAAACTCTGCCGGAAAAATATATGTCGGAATTCGCAGGAACACTAACTTCCCTGCAGCTGAAAGAGGTGAGAAATTAACTGAGAGTGCGGTCTTGGGTGCAGTGGATTTGGCTAACAAGAACGTGGCGTTTGAAGTTGTGTTTTATCCCACAGATGGGAATTGGTGTAATTTTGTAGTGGATGCCAAGGTTGTAGATGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGGGCAAAGCTTCGTTTGATGGAACCTGAATCTTCAAATTTAACTATAAGAGGTTTTCAGCGGGAGGGGACAATCTCTAATGATTCTTCTAATGTCCCTAATTGGCACATGCTTAAGGTTAACTGGGATGGACCTAATATCCCGCAGAATCAAAACCTAGTCAATCCTTGGCAGGTTGAAATTTACAACATACCTGCACCTTTGACTTCCTCCTCCACCGTCAACTCCACTTCAAGAAAACTCCTAGACTTGCTGAGAGTTCATCCCCCCAACAAATTCCACATTCAATGGCAGGGTCGAGTGGTACTTTGCCTGACACATAGCCAAACCTTGGCAGTCCTAACGGTGCTGACTCGTTGCTTCATAACCATAATAGGTCCAATGAGCCAAGCACCAAGTGAGGTATCTTCATTGGCATATTGGTCTGCAGTCACAATTAGGTACTCAGTGAAAATTAGTTTTTCAGGACACTATATTCTCTAA

Protein sequence

>MsaT027636.1

MDSKLWQKCAGPDVKIPKIHSKVYYFPQGHLEHACSSPNAATITILDGYRPSIPCIVSTVGLFVDPHTDEVFAKLLLTPVTDQEPPPPVVHGQEDDDGNNLVSYVKTLTQTDTKSGFNMPRQCTDLIFPELQKSQEVSVTDLPGKVYTYTYSKQSRLTKGWFNFVSEKKLVPEDSVVFIKNSAGKIYVGIRRNTNFPAAERGEKLTESAVLGAVDLANKNVAFEVVFYPTDGNWCNFVVDAKVVDDAMKIGWKSGMRAKLRLMEPESSNLTIRGFQREGTISNDSSNVPNWHMLKVNWDGPNIPQNQNLVNPWQVEIYNIPAPLTSSSTVNSTSRKLLDLLRVHPPNKFHIQWQGRVVLCLTHSQTLAVLTVLTRCFITIIGPMSQAPSEVSSLAYWSAVTIRYSVKISFSGHYIL*