AlfalfaGEDB | MsaG027637

M. sativa ssp. caerulea / MsaG027637

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027637	XP_024640656.1	60.847	378	105	6	1	336	1	377	3.20e-139	410

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027637	sp\|Q84WU6\|ARFQ_ARATH	31.063	367	179	14	8	304	15	377	9.62e-44	162

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027637	tr\|A0A396HRU8\|A0A396HRU8_MEDTR	60.847	378	105	6	1	336	1	377	1.53e-139	410

TFs/TRs:

Gene ID	Type	Classification
MsaG027637	TF	B3-ARF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000161	MsaG027637	0.819954	1.550402e-52	3.405809e-50
MsaG000276	MsaG027637	0.807628	7.831054e-50	1.263010e-47
MsaG001045	MsaG027637	0.800958	1.889833e-48	2.610965e-46
MsaG001259	MsaG027637	0.814366	2.759647e-51	5.250339e-49
MsaG001331	MsaG027637	0.801408	1.530159e-48	2.135745e-46
MsaG002142	MsaG027637	0.807403	8.735701e-50	1.401396e-47
MsaG004010	MsaG027637	0.863405	5.062271e-64	4.489227e-61
MsaG004091	MsaG027637	0.818507	3.299666e-52	6.977877e-50
MsaG004298	MsaG027637	0.819101	2.422136e-52	5.202520e-50
MsaG004329	MsaG027637	0.805400	2.299379e-49	3.518483e-47
MsaG004455	MsaG027637	0.800543	2.294817e-48	3.141014e-46
MsaG004588	MsaG027637	0.830987	3.882618e-55	1.155858e-52
MsaG005275	MsaG027637	0.809197	3.635857e-50	6.089671e-48
MsaG005278	MsaG027637	0.811285	1.295986e-50	2.283730e-48
MsaG005530	MsaG027637	0.807235	9.479075e-50	1.514519e-47
MsaG005776	MsaG027637	0.802250	1.029973e-48	1.465362e-46
MsaG006284	MsaG027637	0.813040	5.387868e-51	9.915502e-49
MsaG006548	MsaG027637	0.805809	1.889001e-49	2.918263e-47
MsaG006762	MsaG027637	0.811032	1.469120e-50	2.572827e-48
MsaG007146	MsaG027637	0.844030	1.818029e-58	8.068671e-56
MsaG007836	MsaG027637	0.829624	8.325853e-55	2.383867e-52
MsaG008125	MsaG027637	0.832259	1.893283e-55	5.848650e-53
MsaG008848	MsaG027637	0.803731	5.106219e-49	7.517044e-47
MsaG009874	MsaG027637	0.821260	7.798607e-53	1.773352e-50
MsaG010307	MsaG027637	0.805138	2.607249e-49	3.965509e-47
MsaG010363	MsaG027637	0.831865	2.365921e-55	7.226237e-53
MsaG010604	MsaG027637	0.832819	1.377030e-55	4.323771e-53
MsaG011002	MsaG027637	0.809642	2.920991e-50	4.945310e-48
MsaG011147	MsaG027637	0.827559	2.613127e-54	7.058187e-52
MsaG011213	MsaG027637	0.802864	7.703617e-49	1.111545e-46
MsaG011559	MsaG027637	0.817333	6.057511e-52	1.242824e-49
MsaG011589	MsaG027637	0.800917	1.926345e-48	2.658949e-46
MsaG012026	MsaG027637	0.846310	4.430039e-59	2.119898e-56
MsaG012162	MsaG027637	0.831761	2.508833e-55	7.639766e-53
MsaG012334	MsaG027637	0.820532	1.144776e-52	2.553455e-50
MsaG042353	MsaG027637	0.810838	1.618114e-50	2.820333e-48
MsaG042532	MsaG027637	0.800444	2.403828e-48	3.282898e-46
MsaG042534	MsaG027637	0.858092	2.038909e-62	1.475235e-59
MsaG042720	MsaG027637	0.816770	8.095673e-52	1.637048e-49
MsaG043029	MsaG027637	0.811240	1.325322e-50	2.332853e-48
MsaG043183	MsaG027637	0.805091	2.667126e-49	4.052052e-47
MsaG044050	MsaG027637	0.813941	3.422414e-51	6.442164e-49
MsaG044119	MsaG027637	0.803281	6.324371e-49	9.213584e-47
MsaG044316	MsaG027637	0.834360	5.702312e-56	1.873941e-53
MsaG044709	MsaG027637	0.818632	3.091810e-52	6.559696e-50
MsaG044869	MsaG027637	0.802616	8.663987e-49	1.243062e-46
MsaG045606	MsaG027637	0.803490	5.725132e-49	8.381129e-47
MsaG046137	MsaG027637	0.832667	1.501455e-55	4.693567e-53
MsaG046278	MsaG027637	0.811648	1.081328e-50	1.922491e-48
MsaG046368	MsaG027637	0.866212	6.744616e-65	6.689649e-62
MsaG046830	MsaG027637	0.812589	6.756140e-51	1.229456e-48
MsaG002980	MsaG027637	0.824277	1.558869e-53	3.844744e-51
MsaG000822	MsaG027637	0.813060	5.335145e-51	9.823343e-49
MsaG009146	MsaG027637	0.855098	1.531376e-61	9.928023e-59
MsaG008489	MsaG027637	0.801856	1.239762e-48	1.748126e-46
MsaG008180	MsaG027637	0.807094	1.015068e-49	1.616456e-47
MsaG012002	MsaG027637	0.864870	1.778259e-64	1.671388e-61
MsaG022641	MsaG027637	0.853677	3.927777e-61	2.420238e-58
MsaG018327	MsaG027637	0.833297	1.048782e-55	3.339718e-53
MsaG019765	MsaG027637	0.820947	9.195879e-53	2.073933e-50
MsaG017922	MsaG027637	0.843775	2.126643e-58	9.361522e-56
MsaG027637	MsaG028382	0.814849	2.160768e-51	4.161038e-49
MsaG027637	MsaG028769	0.802522	9.058254e-49	1.296823e-46
MsaG027637	MsaG026769	0.826368	5.018502e-54	1.311147e-51
MsaG027637	MsaG031514	0.845561	7.062532e-59	3.296534e-56
MsaG027637	MsaG030749	0.826002	6.125597e-54	1.584258e-51
MsaG027637	MsaG033107	0.829222	1.041441e-54	2.947335e-52
MsaG027637	MsaG036285	0.827688	2.434041e-54	6.598096e-52
MsaG027637	MsaG040323	0.816670	8.523324e-52	1.719001e-49
MsaG027637	MsaG044603	0.823381	2.522238e-53	6.071443e-51
MsaG027637	MsaG043553	0.823413	2.479373e-53	5.973262e-51
MsaG013553	MsaG027637	0.808472	5.186367e-50	8.536641e-48
MsaG014042	MsaG027637	0.817490	5.587044e-52	1.150930e-49
MsaG014314	MsaG027637	0.808024	6.456979e-50	1.051402e-47
MsaG014305	MsaG027637	0.813643	3.977284e-51	7.430669e-49
MsaG014554	MsaG027637	0.800553	2.283888e-48	3.126806e-46
MsaG015144	MsaG027637	0.827925	2.135403e-54	5.827418e-52
MsaG015237	MsaG027637	0.817879	4.567898e-52	9.504575e-50
MsaG015319	MsaG027637	0.834125	6.526312e-56	2.129507e-53
MsaG015322	MsaG027637	0.823180	2.808697e-53	6.724122e-51
MsaG015328	MsaG027637	0.813065	5.320671e-51	9.798019e-49
MsaG015330	MsaG027637	0.807472	8.447781e-50	1.357429e-47
MsaG016118	MsaG027637	0.826030	6.034367e-54	1.561842e-51
MsaG016159	MsaG027637	0.801325	1.591498e-48	2.217152e-46
MsaG016384	MsaG027637	0.862725	8.197325e-64	7.077160e-61
MsaG016416	MsaG027637	0.815996	1.203631e-51	2.386181e-49
MsaG016448	MsaG027637	0.821995	5.282120e-53	1.224803e-50
MsaG017167	MsaG027637	0.804553	3.450331e-49	5.176872e-47
MsaG017279	MsaG027637	0.831153	3.536361e-55	1.057813e-52
MsaG017407	MsaG027637	0.857086	4.034711e-62	2.812197e-59
MsaG017887	MsaG027637	0.854162	2.851659e-61	1.788011e-58
MsaG017973	MsaG027637	0.820153	1.396743e-52	3.084519e-50
MsaG018488	MsaG027637	0.806481	1.365995e-49	2.144184e-47
MsaG018493	MsaG027637	0.803003	7.212670e-49	1.044065e-46
MsaG018680	MsaG027637	0.842756	3.965245e-58	1.689427e-55
MsaG018849	MsaG027637	0.809025	3.955829e-50	6.598492e-48
MsaG019060	MsaG027637	0.801368	1.559339e-48	2.174466e-46
MsaG019016	MsaG027637	0.815187	1.819029e-51	3.533051e-49
MsaG019278	MsaG027637	0.844844	1.101054e-58	5.019810e-56
MsaG019335	MsaG027637	0.810678	1.750980e-50	3.039961e-48
MsaG019312	MsaG027637	0.813464	4.352499e-51	8.095363e-49
MsaG019435	MsaG027637	0.829311	9.911047e-55	2.812187e-52
MsaG019473	MsaG027637	0.810590	1.829125e-50	3.168883e-48
MsaG020730	MsaG027637	0.822588	3.853230e-53	9.078298e-51
MsaG020850	MsaG027637	0.811919	9.446970e-51	1.690859e-48
MsaG021090	MsaG027637	0.809923	2.543112e-50	4.334893e-48
MsaG021496	MsaG027637	0.803869	4.780300e-49	7.059633e-47
MsaG021888	MsaG027637	0.844319	1.522207e-58	6.820491e-56
MsaG022579	MsaG027637	0.836598	1.559360e-56	5.479698e-54
MsaG022880	MsaG027637	0.822198	4.742836e-53	1.105737e-50
MsaG023078	MsaG027637	0.831158	3.525792e-55	1.054810e-52
MsaG023997	MsaG027637	0.817662	5.110855e-52	1.057466e-49
MsaG025332	MsaG027637	0.804497	3.543802e-49	5.310283e-47
MsaG025530	MsaG027637	0.807818	7.137777e-50	1.156524e-47
MsaG025985	MsaG027637	0.805824	1.874866e-49	2.897553e-47
MsaG026901	MsaG027637	0.824088	1.726209e-53	4.235578e-51
MsaG027526	MsaG027637	0.812195	8.232125e-51	1.483385e-48
MsaG027543	MsaG027637	0.831124	3.593999e-55	1.074182e-52
MsaG027547	MsaG027637	0.839073	3.631330e-57	1.377096e-54
MsaG027759	MsaG027637	0.820304	1.290022e-52	2.860276e-50
MsaG027891	MsaG027637	0.813342	4.629793e-51	8.584502e-49
MsaG028181	MsaG027637	0.810413	1.997159e-50	3.445172e-48
MsaG028493	MsaG027637	0.803993	4.506070e-49	6.673895e-47
MsaG028575	MsaG027637	0.804263	3.962848e-49	5.906195e-47
MsaG028760	MsaG027637	0.821627	6.419191e-53	1.473960e-50
MsaG028762	MsaG027637	0.803213	6.528778e-49	9.496692e-47
MsaG028831	MsaG027637	0.809508	3.120667e-50	5.266499e-48
MsaG029076	MsaG027637	0.826327	5.130504e-54	1.338874e-51
MsaG029106	MsaG027637	0.809692	2.850190e-50	4.831236e-48
MsaG029377	MsaG027637	0.802359	9.783085e-49	1.395401e-46
MsaG030197	MsaG027637	0.868425	1.332936e-65	1.446972e-62
MsaG030455	MsaG027637	0.833284	1.056081e-55	3.361767e-53
MsaG030494	MsaG027637	0.800963	1.885313e-48	2.605029e-46
MsaG030593	MsaG027637	0.823109	2.917455e-53	6.971023e-51
MsaG031104	MsaG027637	0.828319	1.718512e-54	4.741734e-52
MsaG034446	MsaG027637	0.813997	3.327584e-51	6.272255e-49
MsaG034554	MsaG027637	0.800688	2.144856e-48	2.945480e-46
MsaG034621	MsaG027637	0.808485	5.155501e-50	8.488333e-48
MsaG035144	MsaG027637	0.832828	1.369682e-55	4.301851e-53
MsaG035673	MsaG027637	0.820144	1.403022e-52	3.097723e-50
MsaG036482	MsaG027637	0.832661	1.506643e-55	4.708981e-53
MsaG037804	MsaG027637	0.811345	1.257492e-50	2.219170e-48
MsaG038522	MsaG027637	0.814308	2.842892e-51	5.400658e-49
MsaG039607	MsaG027637	0.805337	2.369552e-49	3.620616e-47
MsaG039979	MsaG027637	0.800331	2.533621e-48	3.451251e-46
MsaG040100	MsaG027637	0.823275	2.669463e-53	6.407438e-51
MsaG040511	MsaG027637	0.812698	6.398193e-51	1.167452e-48
MsaG040748	MsaG027637	0.820766	1.011616e-52	2.270402e-50
MsaG041293	MsaG027637	0.801880	1.225673e-48	1.729228e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027637	MtrunA17_Chr5g0425261	60.847	378	105	6	1	336	1	377	2.94e-143	410
MsaG027637	MtrunA17_Chr5g0424801	60.582	378	106	6	1	336	1	377	6.12e-142	407
MsaG027637	MtrunA17_Chr5g0424741	49.735	378	122	8	1	311	1	377	8.97e-105	317
MsaG027637	MtrunA17_Chr5g0424931	48.642	405	115	14	1	321	8	403	3.65e-103	313
MsaG027637	MtrunA17_Chr1g0178011	46.366	399	153	14	1	348	1	389	3.97e-92	283
MsaG027637	MtrunA17_Chr5g0424791	87.857	140	16	1	33	171	12	151	2.12e-77	234
MsaG027637	MtrunA17_Chr5g0417281	43.155	336	141	11	8	304	7	331	1.19e-71	231
MsaG027637	MtrunA17_Chr2g0289221	44.172	326	121	13	4	284	12	321	1.66e-69	221
MsaG027637	MtrunA17_Chr2g0277461	42.151	344	142	13	5	304	6	336	4.57e-67	218
MsaG027637	MtrunA17_Chr5g0417211	43.027	337	128	13	5	294	5	324	8.85e-67	216
MsaG027637	MtrunA17_Chr5g0436761	38.133	375	173	11	5	333	5	366	3.90e-66	216
MsaG027637	MtrunA17_Chr2g0277531	38.438	320	141	10	6	284	14	318	3.12e-57	188
MsaG027637	MtrunA17_Chr3g0115271	34.626	361	169	11	30	337	63	409	6.25e-48	170
MsaG027637	MtrunA17_Chr5g0425651	63.393	112	39	2	197	307	1	111	9.09e-42	142
MsaG027637	MtrunA17_Chr1g0181211	31.008	387	174	15	11	310	26	406	1.44e-36	139
MsaG027637	MtrunA17_Chr2g0326761	30.108	372	176	14	11	304	10	375	1.19e-35	137
MsaG027637	MtrunA17_Chr1g0199681	31.594	345	166	11	24	309	130	463	4.33e-35	135
MsaG027637	MtrunA17_Chr4g0028971	29.517	393	188	14	1	309	1	388	1.52e-33	131
MsaG027637	MtrunA17_Chr5g0425661	43.005	193	71	6	12	166	37	228	5.85e-32	120
MsaG027637	MtrunA17_Chr7g0264171	30.058	346	170	14	31	310	74	413	1.37e-30	122
MsaG027637	MtrunA17_Chr2g0276781	26.425	386	210	13	9	338	20	387	3.40e-27	112
MsaG027637	MtrunA17_Chr7g0239061	28.772	285	181	8	35	304	67	344	1.83e-25	107
MsaG027637	MtrunA17_Chr7g0264161	31.022	274	162	12	31	284	35	301	6.69e-25	102
MsaG027637	MtrunA17_Chr4g0009751	28.920	287	178	9	35	304	72	349	9.77e-25	105
MsaG027637	MtrunA17_Chr2g0282961	25.648	347	212	11	2	304	43	387	1.94e-24	104
MsaG027637	MtrunA17_Chr8g0385791	27.815	302	193	8	25	309	103	396	2.61e-24	104
MsaG027637	MtrunA17_Chr2g0285461	27.557	352	179	16	12	304	23	357	3.23e-24	103
MsaG027637	MtrunA17_Chr3g0109391	27.508	309	175	11	26	304	71	360	2.08e-22	98.6
MsaG027637	MtrunA17_Chr5g0433301	28.479	309	172	12	26	304	69	358	2.54e-22	98.6
MsaG027637	MtrunA17_Chr8g0376771	27.221	349	183	16	12	304	23	356	3.35e-22	98.2
MsaG027637	MtrunA17_Chr4g0070181	25.439	342	213	8	9	309	20	360	1.51e-21	96.3
MsaG027637	MtrunA17_Chr2g0301251	26.936	297	198	6	31	309	65	360	4.25e-21	94.7
MsaG027637	MtrunA17_Chr8g0346711	26.531	343	195	13	9	304	26	358	3.35e-20	92.0
MsaG027637	MtrunA17_Chr1g0156321	28.716	296	181	12	31	304	89	376	1.00e-19	90.5
MsaG027637	MtrunA17_Chr4g0046371	24.269	342	207	12	12	304	38	376	1.77e-17	84.0
MsaG027637	MtrunA17_Chr8g0389081	24.561	342	212	8	7	304	27	366	2.62e-17	83.6
MsaG027637	MtrunA17_Chr4g0029671	26.019	319	176	12	26	304	98	396	4.77e-17	82.4
MsaG027637	MtrunA17_Chr2g0326281	26.198	313	189	12	30	304	103	411	1.07e-15	78.6
MsaG027637	MtrunA17_Chr8g0356211	24.686	239	151	7	92	313	3	229	4.01e-13	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027637	AT1G77850.2	31.063	367	179	14	8	304	15	377	9.40e-45	162
MsaG027637	AT1G77850.1	31.063	367	179	14	8	304	15	377	9.78e-45	162
MsaG027637	AT4G30080.1	31.367	373	170	15	11	304	18	383	3.36e-37	142
MsaG027637	AT2G28350.1	29.427	384	181	17	11	309	9	387	6.22e-34	132
MsaG027637	AT2G28350.2	29.427	384	181	17	11	309	9	387	6.44e-34	132
MsaG027637	AT2G46530.1	30.952	294	169	11	31	304	71	350	9.48e-29	117
MsaG027637	AT2G46530.3	30.952	294	169	11	31	304	92	371	1.16e-28	117
MsaG027637	AT3G61830.1	26.724	348	190	12	8	304	21	354	8.60e-27	111
MsaG027637	AT3G61830.2	29.592	294	173	11	31	304	24	303	8.62e-27	111
MsaG027637	AT1G35520.1	29.677	310	182	13	35	326	80	371	5.32e-26	109
MsaG027637	AT1G34390.1	26.966	356	185	13	9	309	24	359	8.57e-26	108
MsaG027637	AT1G59750.2	27.353	340	192	11	12	304	22	353	1.54e-25	108
MsaG027637	AT1G59750.4	27.353	340	192	11	12	304	22	353	1.66e-25	108
MsaG027637	AT1G59750.1	27.353	340	192	11	12	304	22	353	1.72e-25	108
MsaG027637	AT1G59750.3	27.353	340	192	11	12	304	22	353	1.72e-25	108
MsaG027637	AT4G23980.2	28.000	300	193	8	31	313	62	355	3.89e-25	107
MsaG027637	AT4G23980.1	28.000	300	193	8	31	313	62	355	4.13e-25	107
MsaG027637	AT1G34410.1	30.033	303	171	13	35	313	80	365	9.58e-25	105
MsaG027637	AT1G34310.1	27.933	358	189	15	9	313	24	365	2.21e-24	104
MsaG027637	AT1G35240.1	29.568	301	175	12	35	313	80	365	3.04e-24	104
MsaG027637	AT1G30330.1	26.703	367	186	15	2	304	10	357	3.34e-24	104
MsaG027637	AT1G30330.3	26.836	354	179	14	12	304	25	359	4.72e-24	103
MsaG027637	AT1G30330.2	26.836	354	179	14	12	304	25	359	4.72e-24	103
MsaG027637	AT2G33860.1	28.487	337	187	15	31	331	96	414	8.17e-24	103
MsaG027637	AT5G37020.2	26.271	354	181	15	12	304	22	356	9.58e-24	103
MsaG027637	AT5G37020.1	26.271	354	181	15	12	304	22	356	1.23e-23	102
MsaG027637	AT5G62000.4	26.821	302	177	9	35	309	114	398	3.07e-23	101
MsaG027637	AT5G62000.2	26.821	302	177	9	35	309	114	398	3.25e-23	101
MsaG027637	AT5G62000.5	26.821	302	177	9	35	309	114	398	3.25e-23	101
MsaG027637	AT5G62000.3	26.821	302	177	9	35	309	114	398	3.25e-23	101
MsaG027637	AT5G62000.1	26.821	302	177	9	35	309	114	398	3.25e-23	101
MsaG027637	AT2G46530.2	30.709	254	146	10	67	304	24	263	6.28e-23	100
MsaG027637	AT1G35540.1	26.822	343	190	14	9	304	24	352	7.40e-23	100
MsaG027637	AT2G33860.2	28.519	270	156	12	85	331	2	257	1.58e-20	92.8
MsaG027637	AT5G60450.1	25.000	352	200	13	9	304	62	405	1.82e-19	90.1
MsaG027637	AT5G60450.2	25.000	352	200	13	9	304	38	381	2.12e-19	90.1
MsaG027637	AT1G34170.1	27.666	347	184	15	9	304	22	352	2.31e-19	89.4
MsaG027637	AT1G19850.1	27.660	282	191	6	35	304	108	388	1.68e-18	87.4
MsaG027637	AT1G19850.2	27.660	282	191	6	35	304	97	377	1.73e-18	87.4
MsaG027637	AT5G20730.1	25.507	345	210	11	9	309	21	362	2.07e-18	87.4
MsaG027637	AT5G20730.3	25.507	345	210	11	9	309	21	362	2.22e-18	87.0
MsaG027637	AT5G20730.2	25.797	345	208	12	9	309	21	361	3.36e-18	86.7
MsaG027637	AT1G19220.1	25.874	286	200	5	35	309	76	360	1.13e-17	85.1
MsaG027637	AT5G37020.3	28.571	245	136	10	85	304	31	261	1.91e-17	84.0
MsaG027637	AT1G34170.2	27.089	347	160	17	9	304	22	326	3.19e-13	70.9
MsaG027637	AT1G34170.3	27.089	347	160	17	9	304	22	326	4.14e-13	70.9

Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTTCCATCTTCGTCTTCT+TGG	0.210312	5:-49356356	None:intergenic
CCTGAAAACAACAGAATCTT+TGG	0.226595	5:-49356601	None:intergenic
ATTCTTCAAATGTCCCTAAT+TGG	0.230817	5:+49356952	MsaT027637.1:CDS
ATGAAGATTGGTTGGGAATC+TGG	0.311617	5:+49356837	MsaT027637.1:CDS
CGTAGGTGCAACCCCATTCT+TGG	0.311998	5:-49356518	None:intergenic
CTTTCACCCGCTTCAGCTGC+AGG	0.324014	5:-49356675	None:intergenic
ACCTCAAGAATGCGCCAATT+AGG	0.328543	5:-49356966	None:intergenic
GGCAACAAGTCAGCCGATTT+AGG	0.332336	5:-49357790	None:intergenic
TCCATCTTCGTCTTCTTGGC+CGG	0.332884	5:-49356352	None:intergenic
CTGCTCCTCACTCCGGTAAC+TGG	0.333359	5:+49356300	MsaT027637.1:CDS
GACTTCTCCAAGTCAAGCTT+TGG	0.342525	5:-49356465	None:intergenic
ATCTTTGGAACCTTGGCATC+GGG	0.343346	5:-49356105	None:intergenic
CCTCAAGAATGCGCCAATTA+GGG	0.362876	5:-49356965	None:intergenic
CCATCTTCGTCTTCTTGGCC+GGG	0.390410	5:-49356351	None:intergenic
GGAGGTTCTTGGCCAGTTAC+CGG	0.390862	5:-49356312	None:intergenic
GCCATGCCTCTGCCTGAGCC+AGG	0.396403	5:+49356045	None:intergenic
AGATTCCCAACCAATCTTCA+TGG	0.412679	5:-49356835	None:intergenic
GTACTGGCTGGTCTCACTTT+CGG	0.420748	5:+49356559	MsaT027637.1:CDS
CAGTAGGAGGAGGAGGTTCT+TGG	0.423692	5:-49356323	None:intergenic
CGACCTTAAAAGCCAAGAAT+GGG	0.432454	5:+49356506	MsaT027637.1:CDS
CCTCCTCCTACTGTTGTTCC+CGG	0.432625	5:+49356333	MsaT027637.1:CDS
GCCGTGTCCACCCTAAAATA+TGG	0.440684	5:+49356067	MsaT027637.1:CDS
GGGTGGACACGGCCTGGCTC+AGG	0.447654	5:-49356057	None:intergenic
ATACACTGGCAGTCCTAAAT+CGG	0.448630	5:+49357777	MsaT027637.1:CDS
ATTATCCGACAGCTAGGAAT+TGG	0.450128	5:+49356775	MsaT027637.1:CDS
TCTGCTGGAAAGATATTAGT+TGG	0.452740	5:+49356630	MsaT027637.1:CDS
CCGCACTCTCAGTTAAATTC+CGG	0.457010	5:-49356701	None:intergenic
GATCTTTCCAAAGCTTGACT+TGG	0.477680	5:+49356458	MsaT027637.1:CDS
TACCGGAGTGAGGAGCAGTT+TGG	0.479172	5:-49356295	None:intergenic
AACTTCCCTGCAGCTGAAGC+GGG	0.481484	5:+49356669	MsaT027637.1:CDS
ATCAGGAAAAGTAGAATGGC+AGG	0.482347	5:+49357724	MsaT027637.1:CDS
TTATCATAGGTTAACTGGGA+TGG	0.485250	5:+49357604	MsaT027637.1:intron
ACAGTAGAGATTGTTCCCTT+AGG	0.494524	5:-49356921	None:intergenic
ACACGGCCTGGCTCAGGCAG+AGG	0.496843	5:-49356051	None:intergenic
ACAAGGGTGATGGTTTCATC+AGG	0.497114	5:+49357707	MsaT027637.1:CDS
GTAGATGATGCCATGAAGAT+TGG	0.497274	5:+49356825	MsaT027637.1:CDS
CCCTAATTGGCGCATTCTTG+AGG	0.497342	5:+49356965	MsaT027637.1:CDS
GCAGCTGAAGCGGGTGAAAG+AGG	0.499828	5:+49356678	MsaT027637.1:CDS
AGCATCAACAAAGAGATTAA+CGG	0.500852	5:-49356253	None:intergenic
CCGACCTTAAAAGCCAAGAA+TGG	0.501034	5:+49356505	MsaT027637.1:CDS
AAAGACATATTATAAGCCTA+AGG	0.505882	5:+49356905	MsaT027637.1:CDS
ATACAAACATAGTCAATCCT+TGG	0.507379	5:+49357644	MsaT027637.1:CDS
AGATATTAGTTGGAATTCGC+AGG	0.508600	5:+49356640	MsaT027637.1:CDS
TTTGAATACAGTTGAATTAG+CGG	0.512559	5:+49356725	MsaT027637.1:CDS
ACTTGTTGCTTGGTTCATTG+AGG	0.515871	5:-49357811	None:intergenic
CTGAAGCGGGTGAAAGAGGC+CGG	0.516670	5:+49356682	MsaT027637.1:CDS
AATCTTTGGAACCTTGGCAT+CGG	0.533073	5:-49356106	None:intergenic
CGCCAAACTGCTCCTCACTC+CGG	0.538251	5:+49356293	MsaT027637.1:CDS
AAAATATGGCAGATATGTGC+AGG	0.539162	5:+49356081	MsaT027637.1:CDS
GCCTGGCTCAGGCAGAGGCA+TGG	0.543238	5:-49356046	None:intergenic
TAACTTCCCTGCAGCTGAAG+CGG	0.546068	5:+49356668	MsaT027637.1:CDS
TTTCATCAGGAAAAGTAGAA+TGG	0.549729	5:+49357720	MsaT027637.1:CDS
ATGATGCCATGAAGATTGGT+TGG	0.554453	5:+49356829	MsaT027637.1:CDS
ATGTGCAGGCCCCGATGCCA+AGG	0.559547	5:+49356095	MsaT027637.1:CDS
TTGCAAGCTTCAAGCTGCCA+AGG	0.562587	5:-49357661	None:intergenic
TTGTGTATTATCCGACAGCT+AGG	0.565398	5:+49356769	MsaT027637.1:CDS
CCCGGCCAAGAAGACGAAGA+TGG	0.565421	5:+49356351	MsaT027637.1:CDS
GAAATGATGCATGGAAAGGA+TGG	0.568677	5:-49356228	None:intergenic
TGATGCCATGAAGATTGGTT+GGG	0.569149	5:+49356830	MsaT027637.1:CDS
TTTCACCCGCTTCAGCTGCA+GGG	0.570879	5:-49356674	None:intergenic
GGAACAACAGTAGGAGGAGG+AGG	0.574344	5:-49356330	None:intergenic
TCACACCAATTCCTAGCTGT+CGG	0.585707	5:-49356780	None:intergenic
TCTTGGCCGGGAACAACAGT+AGG	0.588215	5:-49356339	None:intergenic
CTTGGCCAGTTACCGGAGTG+AGG	0.591769	5:-49356305	None:intergenic
TGAATTAGCGGACAAGAACA+TGG	0.593074	5:+49356737	MsaT027637.1:CDS
AAGACATATTATAAGCCTAA+GGG	0.594017	5:+49356906	MsaT027637.1:CDS
TGTTGATGCTCTCACTGACG+AGG	0.594122	5:+49356266	MsaT027637.1:CDS
TTAACGGCTGAAATGATGCA+TGG	0.595581	5:-49356237	None:intergenic
CCGGGAACAACAGTAGGAGG+AGG	0.601910	5:-49356333	None:intergenic
ACAGTAGACTACGTACTGGC+TGG	0.603214	5:+49356547	MsaT027637.1:CDS
CCGGAATTTAACTGAGAGTG+CGG	0.606695	5:+49356701	MsaT027637.1:CDS
TGGCCGGGAACAACAGTAGG+AGG	0.609021	5:-49356336	None:intergenic
AGTAGAATGGCAGGGCTGAG+TGG	0.615590	5:+49357733	MsaT027637.1:CDS
ATCAAGTCAGCGAATTCATG+AGG	0.631551	5:-49356438	None:intergenic
GGCTGAAATGATGCATGGAA+AGG	0.633559	5:-49356232	None:intergenic
TCTTTGGAACCTTGGCATCG+GGG	0.654059	5:-49356104	None:intergenic
TGATGCATGGAAAGGATGGA+CGG	0.656958	5:-49356224	None:intergenic
TCAGGAAAAGTAGAATGGCA+GGG	0.663509	5:+49357725	MsaT027637.1:CDS
TCTGACACAGAGCTATACAC+TGG	0.679314	5:+49357763	MsaT027637.1:CDS
GACCTTAAAAGCCAAGAATG+GGG	0.680749	5:+49356507	MsaT027637.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	49356048	49357819	49356048	ID=MsaG027637
Chr5	mRNA	49356048	49357819	49356048	ID=MsaT027637.1;Parent=MsaG027637
Chr5	exon	49356048	49356116	49356048	ID=MsaT027637.1.exon1;Parent=MsaT027637.1
Chr5	CDS	49356048	49356116	49356048	ID=cds.MsaT027637.1;Parent=MsaT027637.1
Chr5	exon	49356207	49356986	49356207	ID=MsaT027637.1.exon2;Parent=MsaT027637.1
Chr5	CDS	49356207	49356986	49356207	ID=cds.MsaT027637.1;Parent=MsaT027637.1
Chr5	exon	49357613	49357819	49357613	ID=MsaT027637.1.exon3;Parent=MsaT027637.1
Chr5	CDS	49357613	49357819	49357613	ID=cds.MsaT027637.1;Parent=MsaT027637.1

Gene Sequence

>MsaT027637.1

ATGCCTCTGCCTGAGCCAGGCCGTGTCCACCCTAAAATATGGCAGATATGTGCAGGCCCCGATGCCAAGTTTCTTTATGATCGTTACCGTCCATCCTTTCCATGCATCATTTCAGCCGTTAATCTCTTTGTTGATGCTCTCACTGACGAGGTTTTCGCCAAACTGCTCCTCACTCCGGTAACTGGCCAAGAACCTCCTCCTCCTACTGTTGTTCCCGGCCAAGAAGACGAAGATGGAAACCATCTTGTTTCCTATGTCAAAACTCTCACAACAACTGATACTAAATCTGTATTCAAGATACCTCATGAATTCGCTGACTTGATCTTTCCAAAGCTTGACTTGGAGAAGTCTCAAAACATCACTGTCACCGACCTTAAAAGCCAAGAATGGGGTTGCACCTACGTGAAAAACAGTAGACTACGTACTGGCTGGTCTCACTTTCGGAAAGAGAAGAAACTCGTAGCCAAAGATTCTGTTGTTTTCAGGAAAAACTCTGCTGGAAAGATATTAGTTGGAATTCGCAGGAACACTAACTTCCCTGCAGCTGAAGCGGGTGAAAGAGGCCGGAATTTAACTGAGAGTGCGGTTTTGAATACAGTTGAATTAGCGGACAAGAACATGGAGTTTGAAGTTGTGTATTATCCGACAGCTAGGAATTGGTGTGATTTTGTGATGGATGCTAAGGTTGTAGATGATGCCATGAAGATTGGTTGGGAATCTGGAATGAGAGTCAAACTTACGTTGAAGAAAGATGAATCTTCAAATTCAAAGACATATTATAAGCCTAAGGGAACAATCTCTACTGTCTTTAATTATTCTTCAAATGTCCCTAATTGGCGCATTCTTGAGGTTAACTGGGATGGACCTAAAATCTTGCAAAATACAAACATAGTCAATCCTTGGCAGCTTGAAGCTTGCAACATACCTGCAAAAGTTTTGAATGACAAGGGTGATGGTTTCATCAGGAAAAGTAGAATGGCAGGGCTGAGTGGTACTTTGTCTGACACAGAGCTATACACTGGCAGTCCTAAATCGGCTGACTTGTTGCCTCAATGA

Protein sequence

>MsaT027637.1

MPLPEPGRVHPKIWQICAGPDAKFLYDRYRPSFPCIISAVNLFVDALTDEVFAKLLLTPVTGQEPPPPTVVPGQEDEDGNHLVSYVKTLTTTDTKSVFKIPHEFADLIFPKLDLEKSQNITVTDLKSQEWGCTYVKNSRLRTGWSHFRKEKKLVAKDSVVFRKNSAGKILVGIRRNTNFPAAEAGERGRNLTESAVLNTVELADKNMEFEVVYYPTARNWCDFVMDAKVVDDAMKIGWESGMRVKLTLKKDESSNSKTYYKPKGTISTVFNYSSNVPNWRILEVNWDGPKILQNTNIVNPWQLEACNIPAKVLNDKGDGFIRKSRMAGLSGTLSDTELYTGSPKSADLLPQ*