AlfalfaGEDB | MsaG027783

M. sativa ssp. caerulea / MsaG027783

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027783	XP_003615216.2	91.103	843	60	6	1	834	1	837	0.0	1514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027783	sp\|Q9SSE9\|JMJ25_ARATH	56.442	489	200	3	350	833	415	895	2.52e-179	546
MsaG027783	sp\|Q9SSE9\|JMJ25_ARATH	35.806	310	183	5	29	332	49	348	3.71e-47	185

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027783	tr\|G7KBD9\|G7KBD9_MEDTR	91.103	843	60	6	1	834	1	837	0.0	1514

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TFs/TRs:

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Gene ID	Type	Classification
MsaG027783	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG027765	MsaG027783	0.824301	1.538926e-53	3.798092e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG027783	MtrunA17_Chr5g0426961	91.103	843	60	6	1	834	1	837	1514
MsaG027783	MtrunA17_Chr1g0211711	72.286	783	190	7	68	833	280	1052	1158
MsaG027783	MtrunA17_Chr1g0183311	63.199	894	255	10	3	833	1	883	1074
MsaG027783	MtrunA17_Chr1g0211661	69.585	651	191	2	128	772	216	865	937
MsaG027783	MtrunA17_Chr1g0211691	70.894	615	153	7	129	720	334	945	874
MsaG027783	MtrunA17_Chr5g0420361	63.902	651	192	8	208	822	145	788	829
MsaG027783	MtrunA17_Chr6g0472441	60.398	654	190	11	208	822	87	710	759
MsaG027783	MtrunA17_Chr2g0289121	45.455	814	380	17	33	829	53	819	624
MsaG027783	MtrunA17_Chr5g0448301	60.646	526	180	5	224	742	126	631	619
MsaG027783	MtrunA17_Chr4g0075261	45.174	746	321	13	130	829	161	864	616

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027783	AT1G11950.1	49.143	700	333	7	133	829	189	868	0.0	677
MsaG027783	AT1G11950.3	49.143	700	333	7	133	829	189	868	0.0	677
MsaG027783	AT1G62310.1	48.696	690	323	11	136	813	208	878	0.0	649
MsaG027783	AT1G11950.2	46.919	633	313	7	133	762	189	801	0.0	573
MsaG027783	AT3G07610.1	56.442	489	200	3	350	833	415	895	2.57e-180	546
MsaG027783	AT3G07610.1	35.806	310	183	5	29	332	49	348	3.77e-48	185
MsaG027783	AT3G07610.3	54.134	508	204	4	350	833	415	917	2.16e-172	526
MsaG027783	AT3G07610.3	35.806	310	183	5	29	332	49	348	3.50e-48	185
MsaG027783	AT4G00990.2	42.727	550	279	13	137	675	80	604	5.22e-133	415
MsaG027783	AT4G00990.2	63.810	105	33	2	666	770	671	770	6.33e-34	140

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Find 191 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGACTCCTCACAATA+AGG	0.433520	5:+52557944	MsaT027783.1:CDS
AAAAGGTCTGATCATGGATG+GGG	0.603357	5:-52562575	None:intergenic
AAAATAGTTTGTTGGTTGGT+GGG	0.432080	5:+52561144	MsaT027783.1:CDS
AAACCACCGGTAAACGTAAC+CGG	0.429322	5:+52557736	MsaT027783.1:CDS
AAACGCGGGAGCGGTGGCGG+AGG	0.477252	5:+52557683	MsaT027783.1:CDS
AAAGAGACTCAGAACAAACG+CGG	0.708789	5:+52557668	MsaT027783.1:CDS
AAATAGTTTGTTGGTTGGTG+GGG	0.532716	5:+52561145	MsaT027783.1:CDS
AACAAACGCGGGAGCGGTGG+CGG	0.439355	5:+52557680	MsaT027783.1:CDS
AACAACAACACGTTCACGAC+GGG	0.435577	5:+52557609	MsaT027783.1:CDS
AACAATAAAGGCTCCCGTCT+TGG	0.441667	5:+52557821	MsaT027783.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	52557582	52564590	52557582	ID=MsaG027783
Chr5	mRNA	52557582	52564590	52557582	ID=MsaT027783.1;Parent=MsaG027783
Chr5	exon	52557582	52557965	52557582	ID=MsaT027783.1.exon1;Parent=MsaT027783.1
Chr5	CDS	52557582	52557965	52557582	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52558181	52558296	52558181	ID=MsaT027783.1.exon2;Parent=MsaT027783.1
Chr5	CDS	52558181	52558296	52558181	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52558374	52558473	52558374	ID=MsaT027783.1.exon3;Parent=MsaT027783.1
Chr5	CDS	52558374	52558473	52558374	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52558567	52558708	52558567	ID=MsaT027783.1.exon4;Parent=MsaT027783.1
Chr5	CDS	52558567	52558708	52558567	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52558983	52559046	52558983	ID=MsaT027783.1.exon5;Parent=MsaT027783.1
Chr5	CDS	52558983	52559046	52558983	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52559129	52559867	52559129	ID=MsaT027783.1.exon6;Parent=MsaT027783.1
Chr5	CDS	52559129	52559867	52559129	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52560109	52560438	52560109	ID=MsaT027783.1.exon7;Parent=MsaT027783.1
Chr5	CDS	52560109	52560438	52560109	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52561005	52561286	52561005	ID=MsaT027783.1.exon8;Parent=MsaT027783.1
Chr5	CDS	52561005	52561286	52561005	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52562567	52562639	52562567	ID=MsaT027783.1.exon9;Parent=MsaT027783.1
Chr5	CDS	52562567	52562639	52562567	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52562741	52562826	52562741	ID=MsaT027783.1.exon10;Parent=MsaT027783.1
Chr5	CDS	52562741	52562826	52562741	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52563999	52564118	52563999	ID=MsaT027783.1.exon11;Parent=MsaT027783.1
Chr5	CDS	52563999	52564118	52563999	ID=cds.MsaT027783.1;Parent=MsaT027783.1
Chr5	exon	52564522	52564590	52564522	ID=MsaT027783.1.exon12;Parent=MsaT027783.1
Chr5	CDS	52564522	52564590	52564522	ID=cds.MsaT027783.1;Parent=MsaT027783.1

Gene Sequence

>MsaT027783.1

ATGGCGTTTGCGAGGGAACAAGAAGACAACAACAACACGTTCACGACGGGGATTAACAAGCCTCCTATCCATTATGTCTATTCTAGAAAGAGACTCAGAACAAACGCGGGAGCGGTGGCGGAGGAGTTAGCTAAGAACGAAGAACAACAACACCAAACCACCGGTAAACGTAACCGGAAAACCGATGAAGCTGCTTCTTCTTCCGTTGCTGTTCGAAAGAGTCAACGGATAAGAAGAACAACAATAAAGGCTCCCGTCTTGGTAGACAAGAAGAAAAAGAAGAAGAAGAAGAATCTTGGTGATGGTGATGGTGATGGTGCTGAGAAAACCAACACAATTTCTCGAAAGAAACCCGGAAAAAGAAAACAGACTCCTCACAATAAGTGGATTGAAGAGGAGTCCTTAATGTGTCATCAATGTCAAAGAAATGACAAGGGCAGGGTTGTCAGATGCACCAAATGCAAACGGAAAAGATATTGTGTAGACTGTATAAAAAATTGGTATCCTCGATTGAAAGAGGAACAATTTGCTGAGGCATGTCCTGTCTGCTGTGGTAACTGCAATTGCAAAGCTTGTTTGAAGTCACGGAAACTTATAGATTCAATTAAAGAAAAGGAGGAGGAAACCAACGATCATCATCAGGTCGAGCGCTCCAAGTATATGCTCAAAGCTCTTCTTCCACATTTAATACGATTGGATCAAGAACAAATGGCCGAGAAGGAGATAGAAGCCAAGTTACAAGGTCTCTCACTCTCTGAGCTAAAAATTAAAAAATCAAATCCCCATAATGATGAGCGCATGTACTGTGACAACTGCAAAACATCAATATTTGACTACCATAGAAGCTGCACAGAATGCTCTTTTGACCTTTGTCTCCTCTGTTGTCGTGAGCTTCGTTGTGGGCAGCTTCTAGGTGGGGCAGATCCATTTGATTTTGAGTTTATCTTCCGAGGCCCAAATTATCTGCATGGTGAAGTTGCGAAGAAAGTAACCAGATACAAAGCACCTGATGCTGGTGCCCAGCCTGAGATTCCTACGTGGTCAAAATCTGGGTGGCATGCTGATAGTGACGGCAATATTCCCTGTCCAAAACCTGAGATTAAATGTGATCACGGTTACCTTGAACTGAAAAGCGTATTTTCGCCAGAATGCATCTCCGAGTTAGTATGTAAAGCAAAGGAACTTGCAGATTCAATGAAACTTCAAGATGCAGAGGTGACTCTTGATAATAGCTGCTCTTGTTTGAATCCTGTTAGGAATAGAGATGATATACACAATAACACAAGGGAAGCAGCTCTTTGCAAAGAATCCAGGGGCAACTTTTTGTACTGTCCTAGGGCTGTAGATCTTCATCACGATGATTTAGGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGTTTGTCATGTGGCGTGCATTTCGTCAAATAAACAAGAACAAGAACAAGTCACTTTTGGATGTTAAGGCACTTGATTGCTTAGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATTGTCCCAAGGATAATCATAATTGGCCTCAAGTATTGAAATTGAAAGATTGGCCTCCTTCTAAACTATTTGAAGAAAGTTTACCGCGTCATTGTGCGGAGTTCATATCTTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATGAAGTTCTAAAGCCAGACATGGGACCAAAAACATATATTGCTTATGGATTTGCTGAGGAGCTTGGACGGGGTGATTCGGTGACTAGGCTCCATTGTGATATGTCTGACGCAGTAAATGTGTTGACTCATATTGCTGAAGCAAAACTGGATAGTGGGAGTATTGACGCAATTAAGAAATTGAAACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATATTCAGGATGGAGAGACCACTGTTGAAAATAGTTTGTTGGTTGGTGGGGATTCCTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGACGTACCTGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTGTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCATCGGGCATAAGAAAAAGCTGAAGGAAGAGTATGGTATTGAGCCTTGGACTTTTGTTCAGAAGCTTGGAGATGCAATTTTCATTCCAGCTGGTTGCCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATCGTATATGCTATGATTGATGTGGTCAAAAAGTTGGAGAAAGCAAGGAGCCAATGA

Protein sequence

>MsaT027783.1

MAFAREQEDNNNTFTTGINKPPIHYVYSRKRLRTNAGAVAEELAKNEEQQHQTTGKRNRKTDEAASSSVAVRKSQRIRRTTIKAPVLVDKKKKKKKKNLGDGDGDGAEKTNTISRKKPGKRKQTPHNKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRYCVDCIKNWYPRLKEEQFAEACPVCCGNCNCKACLKSRKLIDSIKEKEEETNDHHQVERSKYMLKALLPHLIRLDQEQMAEKEIEAKLQGLSLSELKIKKSNPHNDERMYCDNCKTSIFDYHRSCTECSFDLCLLCCRELRCGQLLGGADPFDFEFIFRGPNYLHGEVAKKVTRYKAPDAGAQPEIPTWSKSGWHADSDGNIPCPKPEIKCDHGYLELKSVFSPECISELVCKAKELADSMKLQDAEVTLDNSCSCLNPVRNRDDIHNNTREAALCKESRGNFLYCPRAVDLHHDDLGHFQWHWSKGEPVIVSNVLECTSGLSWEPFVMWRAFRQINKNKNKSLLDVKALDCLDWCEIDINVHQFFTGYTNCPKDNHNWPQVLKLKDWPPSKLFEESLPRHCAEFISSLPFKEYTNPFKGALNLAVKLPDEVLKPDMGPKTYIAYGFAEELGRGDSVTRLHCDMSDAVNVLTHIAEAKLDSGSIDAIKKLKQKHLEQDKRELHGDIQDGETTVENSLLVGGDSLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPVEEVIHPIHDQTFYLTIGHKKKLKEEYGIEPWTFVQKLGDAIFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIVYAMIDVVKKLEKARSQ*