AlfalfaGEDB | MsaG027873

M. sativa ssp. caerulea / MsaG027873

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF07714.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027873	GAU46717.1	93.684	95	6	0	1	95	646	740	8.48e-56	196

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027873	sp\|Q05609\|CTR1_ARATH	55.556	117	29	1	2	95	542	658	5.39e-34	126

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027873	tr\|A0A2Z6PMH7\|A0A2Z6PMH7_TRISU	93.684	95	6	0	1	95	646	740	4.05e-56	196

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001396	MsaG027873	0.850446	3.219160e-60	1.771553e-57
MsaG002966	MsaG027873	0.811601	1.107304e-50	1.966406e-48
MsaG020023	MsaG027873	0.828025	2.021224e-54	5.531225e-52
MsaG027873	MsaG033550	0.812252	7.998849e-51	1.443370e-48
MsaG027873	MsaG031954	0.808439	5.271989e-50	8.670458e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027873	MtrunA17_Chr5g0427651	78.814	118	2	1	1	95	636	753	4.26e-57	188
MsaG027873	MtrunA17_Chr3g0132791	66.949	118	16	1	1	95	643	760	3.89e-46	157
MsaG027873	MtrunA17_Chr1g0179331	54.237	118	31	1	1	95	545	662	5.75e-35	125
MsaG027873	MtrunA17_Chr8g0392871	53.097	113	28	2	5	94	733	843	7.29e-33	119
MsaG027873	MtrunA17_Chr1g0191171	49.123	114	33	2	5	95	683	794	1.39e-30	113
MsaG027873	MtrunA17_Chr1g0151541	48.246	114	34	2	5	95	657	768	1.53e-29	110
MsaG027873	MtrunA17_Chr6g0482711	52.174	115	30	2	5	96	654	766	1.88e-29	110
MsaG027873	MtrunA17_Chr1g0171451	46.087	115	39	1	4	95	407	521	5.44e-26	100
MsaG027873	MtrunA17_Chr4g0068411	46.491	114	36	2	5	95	454	565	6.56e-25	97.1
MsaG027873	MtrunA17_Chr2g0294351	47.368	114	35	2	5	95	460	571	1.40e-24	96.3
MsaG027873	MtrunA17_Chr5g0397931	41.228	114	42	2	5	95	417	528	1.33e-21	87.8
MsaG027873	MtrunA17_Chr7g0240231	100.000	33	0	0	1	33	1	33	9.49e-19	74.7
MsaG027873	MtrunA17_Chr4g0041201	37.719	114	48	1	6	96	542	655	8.95e-18	76.6
MsaG027873	MtrunA17_Chr2g0325851	36.842	114	49	1	6	96	552	665	2.30e-17	75.5
MsaG027873	MtrunA17_Chr5g0411591	90.625	32	3	0	1	32	1	32	2.89e-15	66.2
MsaG027873	MtrunA17_Chr5g0406251	35.714	98	40	1	2	76	286	383	2.50e-14	67.0
MsaG027873	MtrunA17_Chr1g0202101	34.188	117	51	3	2	95	275	388	3.61e-12	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027873	AT4G24480.3	68.376	117	14	1	2	95	660	776	4.86e-48	163
MsaG027873	AT4G24480.2	68.376	117	14	1	2	95	660	776	6.23e-48	163
MsaG027873	AT4G24480.1	65.574	122	14	1	2	95	660	781	2.33e-47	161
MsaG027873	AT5G03730.2	55.556	117	29	1	2	95	542	658	5.47e-35	126
MsaG027873	AT5G03730.1	55.556	117	29	1	2	95	542	658	5.47e-35	126
MsaG027873	AT1G73660.1	53.982	113	27	2	5	94	742	852	6.56e-33	120
MsaG027873	AT1G18160.1	52.212	113	29	2	5	94	709	819	3.28e-32	118
MsaG027873	AT1G08720.2	50.877	114	31	2	5	95	663	774	2.85e-31	115
MsaG027873	AT1G08720.1	50.877	114	31	2	5	95	663	774	2.94e-31	115
MsaG027873	AT5G11850.1	50.877	114	31	2	5	95	603	714	4.08e-31	115
MsaG027873	AT1G18160.2	51.304	115	31	2	5	96	709	821	9.00e-31	114
MsaG027873	AT3G06630.7	47.368	114	35	2	5	95	428	539	6.20e-24	94.7
MsaG027873	AT3G06630.6	47.368	114	35	2	5	95	344	455	6.59e-24	94.4
MsaG027873	AT3G06630.4	47.368	114	35	2	5	95	428	539	8.51e-24	94.4
MsaG027873	AT3G06630.3	47.368	114	35	2	5	95	428	539	8.51e-24	94.4
MsaG027873	AT3G06630.5	47.368	114	35	2	5	95	428	539	8.51e-24	94.4
MsaG027873	AT3G06630.2	47.368	114	35	2	5	95	428	539	9.29e-24	94.4
MsaG027873	AT3G06630.1	47.368	114	35	2	5	95	428	539	9.34e-24	94.4
MsaG027873	AT3G06620.1	46.491	114	36	2	5	95	488	599	1.14e-23	94.0
MsaG027873	AT5G49470.7	47.368	114	35	2	5	95	358	469	1.28e-23	93.6
MsaG027873	AT3G06640.2	47.368	114	35	2	5	95	440	551	1.44e-23	93.6
MsaG027873	AT3G06640.3	47.368	114	35	2	5	95	440	551	1.44e-23	93.6
MsaG027873	AT5G49470.6	47.368	114	35	2	5	95	485	596	1.63e-23	93.6
MsaG027873	AT3G06640.1	47.368	114	35	2	5	95	440	551	1.75e-23	93.6
MsaG027873	AT5G49470.5	47.368	114	35	2	5	95	485	596	1.87e-23	93.2
MsaG027873	AT5G49470.3	47.368	114	35	2	5	95	485	596	2.00e-23	93.2
MsaG027873	AT5G49470.4	47.368	114	35	2	5	95	459	570	2.47e-23	92.8
MsaG027873	AT1G67890.4	46.491	114	36	2	5	95	353	464	3.56e-23	92.4
MsaG027873	AT1G67890.1	46.491	114	36	2	5	95	481	592	3.86e-23	92.4
MsaG027873	AT5G49470.1	47.368	114	35	2	5	95	198	309	3.92e-23	92.0
MsaG027873	AT1G67890.3	46.491	114	36	2	5	95	481	592	5.86e-23	92.0
MsaG027873	AT1G67890.2	46.491	114	36	2	5	95	481	592	5.86e-23	92.0
MsaG027873	AT4G23050.1	41.228	114	42	2	5	95	461	572	7.54e-23	91.7
MsaG027873	AT4G23050.2	41.228	114	42	2	5	95	462	573	7.54e-23	91.7
MsaG027873	AT3G58640.1	34.188	117	53	2	2	95	545	660	1.07e-17	77.0
MsaG027873	AT3G58640.2	34.188	117	53	2	2	95	545	660	1.07e-17	77.0
MsaG027873	AT2G31010.1	37.391	115	49	1	5	96	513	627	1.31e-17	76.6
MsaG027873	AT2G31010.2	37.391	115	49	1	5	96	513	627	1.31e-17	76.6
MsaG027873	AT5G49470.2	45.652	92	27	1	5	73	482	573	8.25e-17	74.3
MsaG027873	AT4G35780.1	32.479	117	54	2	2	95	283	397	5.25e-14	66.2
MsaG027873	AT4G38470.3	35.714	98	40	1	2	76	281	378	2.66e-13	64.3
MsaG027873	AT2G17700.1	32.479	117	54	2	2	95	277	391	2.71e-13	64.3
MsaG027873	AT4G38470.1	35.714	98	40	1	2	76	281	378	4.34e-13	63.9
MsaG027873	AT4G38470.2	35.714	98	40	1	2	76	281	378	4.54e-13	63.5
MsaG027873	AT4G18950.2	42.647	68	36	1	29	96	199	263	1.26e-11	59.7
MsaG027873	AT4G18950.1	43.284	67	35	1	29	95	199	262	1.43e-11	59.3
MsaG027873	AT2G42640.3	31.250	96	42	2	2	74	520	614	3.24e-11	58.5
MsaG027873	AT2G42640.1	31.250	96	42	2	2	74	520	614	4.85e-11	58.2
MsaG027873	AT2G42640.4	31.250	96	42	2	2	74	482	576	5.71e-11	57.8

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTATTTATGCAGGATCATT+TGG	0.282685	5:-53679457	MsaT027873.1:intron
TGGATGCTGGCCGGTGAATC+AGG	0.287253	5:+53678458	None:intergenic
TCCAAATGTGGTGCTCTTCA+TGG	0.376916	5:-53678645	MsaT027873.1:CDS
CCTTGGATCGTGCATTTCAC+TGG	0.385640	5:+53678438	None:intergenic
CCCATGAAGAGCACCACATT+TGG	0.410475	5:+53678644	None:intergenic
TTATTTATGCAGGATCATTT+GGG	0.416542	5:-53679456	MsaT027873.1:intron
TGGACTGGCTTGAGATATCA+TGG	0.445535	5:-53679589	MsaT027873.1:CDS
GCCATTCGTAATCTTCCCCT+TGG	0.488605	5:+53678421	None:intergenic
ATCAAAGAACGCATTGGTGC+TGG	0.498755	5:-53679554	MsaT027873.1:intron
GTTTATTCCGCCTGATTCAC+CGG	0.500117	5:-53678468	MsaT027873.1:CDS
CCAGTGAAATGCACGATCCA+AGG	0.504528	5:-53678438	MsaT027873.1:CDS
TCGTGCATTTCACTGGATGC+TGG	0.529268	5:+53678445	None:intergenic
CCAAATGTGGTGCTCTTCAT+GGG	0.530102	5:-53678644	MsaT027873.1:CDS
AACCATCACTAGCAATGGAC+TGG	0.566572	5:-53679604	None:intergenic
GCATTTCACTGGATGCTGGC+CGG	0.576096	5:+53678449	None:intergenic
GGACAGTGTACCGTGCTGAA+TGG	0.576758	5:-53679435	MsaT027873.1:CDS
CAGTGAAATGCACGATCCAA+GGG	0.577597	5:-53678437	MsaT027873.1:CDS
CTGCGGATCAAAGAACGCAT+TGG	0.597029	5:-53679560	MsaT027873.1:CDS
TGAAGAGCACCACATTTGGA+TGG	0.617370	5:+53678648	None:intergenic
TAGTGACAGAGTATTTGCCC+AGG	0.619832	5:-53678592	MsaT027873.1:intron
TGTGGTGCTCTTCATGGGTG+CGG	0.620498	5:-53678639	MsaT027873.1:CDS
CTGATCCATGCCATTCAGCA+CGG	0.630160	5:+53679425	None:intergenic
AGATATCATGGGATGAGCTG+CGG	0.633760	5:-53679577	MsaT027873.1:CDS
TCCAAGGGGAAGATTACGAA+TGG	0.635338	5:-53678422	MsaT027873.1:CDS
GTGTACCGTGCTGAATGGCA+TGG	0.657179	5:-53679430	MsaT027873.1:CDS
ACTTGTCCGCCATCCAAATG+TGG	0.684843	5:-53678657	MsaT027873.1:CDS
ATGCTGGCCGGTGAATCAGG+CGG	0.689622	5:+53678461	None:intergenic
TCTGTCACTATAGATAGATG+AGG	0.694310	5:+53678605	None:intergenic
GGACTGGCTTGAGATATCAT+GGG	0.699073	5:-53679588	MsaT027873.1:CDS
AGAGCACCACATTTGGATGG+CGG	0.707353	5:+53678651	None:intergenic
AGTGAAATGCACGATCCAAG+GGG	0.726437	5:-53678436	MsaT027873.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	53678399	53679612	53678399	ID=MsaG027873
Chr5	mRNA	53678399	53679612	53678399	ID=MsaT027873.1;Parent=MsaG027873
Chr5	exon	53678399	53678495	53678399	ID=MsaT027873.1.exon4;Parent=MsaT027873.1
Chr5	CDS	53678399	53678495	53678399	ID=cds.MsaT027873.1;Parent=MsaT027873.1
Chr5	exon	53678593	53678693	53678593	ID=MsaT027873.1.exon3;Parent=MsaT027873.1
Chr5	CDS	53678593	53678693	53678593	ID=cds.MsaT027873.1;Parent=MsaT027873.1
Chr5	exon	53679426	53679466	53679426	ID=MsaT027873.1.exon2;Parent=MsaT027873.1
Chr5	CDS	53679426	53679466	53679426	ID=cds.MsaT027873.1;Parent=MsaT027873.1
Chr5	exon	53679555	53679612	53679555	ID=MsaT027873.1.exon1;Parent=MsaT027873.1
Chr5	CDS	53679555	53679612	53679555	ID=cds.MsaT027873.1;Parent=MsaT027873.1

Gene Sequence	>MsaT027873.1 ATGGACTGGCTTGAGATATCATGGGATGAGCTGCGGATCAAAGAACGCATTGGTGCTGGATCATTTGGGACAGTGTACCGTGCTGAATGGCATGGATCAGTTGCAATAATGAAACTTGTCCGCCATCCAAATGTGGTGCTCTTCATGGGTGCGGTTACAAAGCGTCCTCATCTATCTATAGTGACAGAGTATTTGCCCAGAGGTAGTTTATTCCGCCTGATTCACCGGCCAGCATCCAGTGAAATGCACGATCCAAGGGGAAGATTACGAATGGCTCTAGACGTTGTTTGTACATAA
Protein sequence	>MsaT027873.1 MDWLEISWDELRIKERIGAGSFGTVYRAEWHGSVAIMKLVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHRPASSEMHDPRGRLRMALDVVCT*