AlfalfaGEDB | MsaG027883

M. sativa ssp. caerulea / MsaG027883

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF06200.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027883	XP_003615317.1	97.213	287	7	1	1	287	1	286	0.0	581

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027883	sp\|Q9LRH6\|GAT25_ARATH	58.586	198	80	1	72	267	81	278	5.82e-73	229

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027883	tr\|G7JYF5\|G7JYF5_MEDTR	97.213	287	7	1	1	287	1	286	0.0	581

TFs/TRs:

Gene ID	Type	Classification
MsaG027883	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027883	MtrunA17_Chr5g0427661	97.213	287	7	1	1	287	1	286	0.0	581
MsaG027883	MtrunA17_Chr3g0132761	60.465	258	71	8	46	275	42	296	3.75e-93	278
MsaG027883	MtrunA17_Chr3g0132751	54.595	185	76	5	74	252	69	251	2.28e-57	187
MsaG027883	MtrunA17_Chr4g0049741	51.208	207	80	8	53	245	20	219	3.26e-56	184
MsaG027883	MtrunA17_Chr4g0002231	56.701	97	28	4	152	237	42	135	1.85e-26	101
MsaG027883	MtrunA17_Chr3g0102511	39.216	102	57	3	159	259	4	101	4.34e-15	75.1
MsaG027883	MtrunA17_Chr4g0002261	68.627	51	15	1	127	176	16	66	7.81e-15	67.8
MsaG027883	MtrunA17_Chr4g0002251	67.500	40	13	0	199	238	5	44	2.63e-13	63.9
MsaG027883	MtrunA17_Chr4g0061021	52.459	61	27	1	135	195	505	563	2.53e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG027883	AT4G24470.1	58.586	198	80	1	72	267	81	278	5.92e-74	229
MsaG027883	AT4G24470.2	58.586	198	80	1	72	267	81	278	5.92e-74	229
MsaG027883	AT4G24470.3	62.778	180	65	1	72	249	81	260	1.63e-73	228
MsaG027883	AT1G51600.1	59.893	187	64	4	70	245	79	265	1.07e-68	215
MsaG027883	AT1G51600.2	59.893	187	64	4	70	245	79	265	1.07e-68	215
MsaG027883	AT3G21175.1	51.452	241	84	7	38	245	21	261	3.38e-68	214
MsaG027883	AT3G21175.2	51.667	240	83	7	38	245	21	259	2.57e-67	211
MsaG027883	AT3G21175.3	47.802	182	69	6	38	194	21	201	7.73e-38	133
MsaG027883	AT2G46670.1	50.909	55	27	0	129	183	126	180	3.51e-11	61.6
MsaG027883	AT2G46790.5	50.909	55	27	0	129	183	254	308	6.49e-11	62.4
MsaG027883	AT2G46790.4	50.909	55	27	0	129	183	254	308	6.49e-11	62.4
MsaG027883	AT2G46790.1	50.909	55	27	0	129	183	411	465	6.82e-11	62.8
MsaG027883	AT2G46790.2	50.909	55	27	0	129	183	294	348	8.25e-11	62.4

Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGAAGTGCAAATTC+AGG	0.278085	5:-53882181	None:intergenic
ATGGCCCTCGCCGCATCATT+GGG	0.283489	5:-53885221	None:intergenic
TCCAACTCCGATGCTGTTTA+CGG	0.309806	5:+53882142	MsaT027883.1:CDS
GATGGCCCTCGCCGCATCAT+TGG	0.329482	5:-53885222	None:intergenic
GTTGTAGATGGTTGCTCAAT+AGG	0.337983	5:-53886416	None:intergenic
TCGCTTTCGCCGGCGGTGAT+TGG	0.347965	5:-53882046	None:intergenic
CTGGTCTGTACCACAACTAT+TGG	0.364949	5:-53884949	None:intergenic
GAAAGAAATACCTGCTCAAC+AGG	0.391041	5:-53886091	None:intergenic
GGTCACTTTGCAATGCTTGT+GGG	0.405446	5:+53885253	MsaT027883.1:CDS
GGCGAAAGCGACGACGGTTC+CGG	0.410307	5:+53882058	MsaT027883.1:CDS
ATGATGCGGCGAGGGCCATC+TGG	0.424046	5:+53885225	MsaT027883.1:CDS
AAGCCTCATTACTTAGGTTC+CGG	0.424048	5:+53883431	MsaT027883.1:CDS
GTCGATGCCGGCGTCGGGAC+CGG	0.425728	5:-53882077	None:intergenic
AGGTCACTTTGCAATGCTTG+TGG	0.439332	5:+53885252	MsaT027883.1:CDS
TTTCTGATGGACTGGCATCC+TGG	0.442732	5:-53884980	None:intergenic
TCAATCGGTGTTGTTACTGT+TGG	0.455881	5:+53882496	MsaT027883.1:CDS
CAATCGGTGTTGTTACTGTT+GGG	0.455920	5:+53882497	MsaT027883.1:CDS
AGATAATTCCTGATGTCTCT+TGG	0.456240	5:-53886062	None:intergenic
AGCTTACGCTGTCGTTTCGT+GGG	0.456555	5:+53882218	MsaT027883.1:CDS
ATCTTTCTTTCCTCTTCTGC+CGG	0.458420	5:-53883450	None:intergenic
ATGTAGGATGCAGCGAAAGA+AGG	0.464044	5:+53884893	MsaT027883.1:intron
CAGCTTACGCTGTCGTTTCG+TGG	0.465455	5:+53882217	MsaT027883.1:CDS
TGAGCGTCGATGCCGGCGTC+GGG	0.466145	5:-53882082	None:intergenic
TACTAGCAAATAGTTGTAGA+TGG	0.470683	5:-53886428	None:intergenic
ATCTACTGTACCTGTTGAGC+AGG	0.474916	5:+53886081	MsaT027883.1:CDS
CGGTGCCTCAACAAAGTTTG+AGG	0.475750	5:+53882552	MsaT027883.1:CDS
ATTGAGAATCGAACCTTAGC+AGG	0.477071	5:-53882268	None:intergenic
CAAGCATTGCAAAGTGACCT+TGG	0.478461	5:-53885249	None:intergenic
GCCGTAAACAGCATCGGAGT+TGG	0.479472	5:-53882143	None:intergenic
TGTAGGATGCAGCGAAAGAA+GGG	0.482115	5:+53884894	MsaT027883.1:intron
TGGCATCCTGGCTAGAATCC+TGG	0.494476	5:-53884968	None:intergenic
TCAGTACGAAACGCACGGTA+TGG	0.494591	5:+53882114	MsaT027883.1:CDS
TGACTCTGTTACGCCTGCTA+AGG	0.495608	5:+53882255	MsaT027883.1:CDS
ACCGCATTCACACCAGCATC+AGG	0.496179	5:-53882533	None:intergenic
ATCGAGAAGCCTCATTACTT+AGG	0.501589	5:+53883425	MsaT027883.1:CDS
TTTCATGTTACAGGTTCAAT+CGG	0.502821	5:+53882481	MsaT027883.1:intron
GGAACCGTCGTCGCTTTCGC+CGG	0.503198	5:-53882056	None:intergenic
TACTTAGGTTCCGGCAGAAG+AGG	0.507196	5:+53883440	MsaT027883.1:CDS
GACGGTTCCGGTCCCGACGC+CGG	0.509123	5:+53882070	MsaT027883.1:CDS
ACTACATCTAAGAAACAAGA+TGG	0.513677	5:+53884924	MsaT027883.1:CDS
TCCGATGCTGTTTACGGCAA+CGG	0.517634	5:+53882148	MsaT027883.1:CDS
TTGAGCGTCGATGCCGGCGT+CGG	0.518484	5:-53882083	None:intergenic
ATTGGTACTGTGGTGTTCAA+AGG	0.519474	5:-53882028	None:intergenic
CGACCCCAATGATGCGGCGA+GGG	0.521861	5:+53885217	MsaT027883.1:CDS
AGACCTTTCCAAGAGACATC+AGG	0.523306	5:+53886054	MsaT027883.1:CDS
TCACGAGATTTCTGATGGAC+TGG	0.530433	5:-53884988	None:intergenic
GGTTGAGAGTGTTCGTACAT+TGG	0.539771	5:-53882007	None:intergenic
ACCGTCGTCGCTTTCGCCGG+CGG	0.540258	5:-53882053	None:intergenic
TGCGATGACTAGGTTGATCA+AGG	0.549206	5:+53886344	MsaT027883.1:intron
CAAAGTGACCTTGGACCAGA+TGG	0.549647	5:-53885240	None:intergenic
TGAGAGTGTTCGTACATTGG+TGG	0.550890	5:-53882004	None:intergenic
TTGATGTTGAGCGTCGATGC+CGG	0.559465	5:-53882089	None:intergenic
TACAGACCAGGATTCTAGCC+AGG	0.560530	5:+53884962	MsaT027883.1:CDS
CAAGCTCACGAGATTTCTGA+TGG	0.565628	5:-53884993	None:intergenic
CAATAGTTGTGGTACAGACC+AGG	0.567890	5:+53884950	MsaT027883.1:CDS
GGATGTGAACAACCTGATGC+TGG	0.568670	5:+53882521	MsaT027883.1:CDS
CTGCCGGAACCTAAGTAATG+AGG	0.570375	5:-53883434	None:intergenic
ATTCCTGATGTCTCTTGGAA+AGG	0.575092	5:-53886057	None:intergenic
GGTGCCTCAACAAAGTTTGA+GGG	0.580121	5:+53882553	MsaT027883.1:CDS
ATAGGAGTGATGTTGTGTGC+AGG	0.580688	5:-53886398	None:intergenic
GCCGTTGCCGTAAACAGCAT+CGG	0.590158	5:-53882149	None:intergenic
GGCGAGGGCCATCTGGTCCA+AGG	0.590488	5:+53885232	MsaT027883.1:CDS
CAAGATGGGTCCAATAGTTG+TGG	0.595326	5:+53884939	MsaT027883.1:CDS
TTAAATAGTTGCACACATTG+TGG	0.601041	5:+53885180	MsaT027883.1:intron
CAAGGTAACAACTCAGACTG+TGG	0.601587	5:+53886362	MsaT027883.1:CDS
TCGGTGTTGTTACTGTTGGG+TGG	0.618046	5:+53882500	MsaT027883.1:CDS
TACGTCAAGAAGTTGCACTC+AGG	0.620095	5:+53883500	MsaT027883.1:CDS
ACCACCCTCAAACTTTGTTG+AGG	0.626395	5:-53882557	None:intergenic
ACCGCCGGCGAAAGCGACGA+CGG	0.634534	5:+53882052	MsaT027883.1:CDS
TAGGAGTGATGTTGTGTGCA+GGG	0.638031	5:-53886397	None:intergenic
CTACATCTAAGAAACAAGAT+GGG	0.649224	5:+53884925	MsaT027883.1:CDS
CAAAATCGACCCCAATGATG+CGG	0.651595	5:+53885211	MsaT027883.1:CDS
ACCACAGTACCAATCACCGC+CGG	0.655305	5:+53882037	MsaT027883.1:CDS
GCCTCAACAAAGTTTGAGGG+TGG	0.655336	5:+53882556	MsaT027883.1:CDS
TCGACCCCAATGATGCGGCG+AGG	0.660240	5:+53885216	MsaT027883.1:CDS
GATGCTGTTTACGGCAACGG+CGG	0.661829	5:+53882151	MsaT027883.1:CDS
ACCTGATGCTGGTGTGAATG+CGG	0.662406	5:+53882532	MsaT027883.1:CDS
GCCGGCGGTGATTGGTACTG+TGG	0.669157	5:-53882038	None:intergenic
TGGCCCTCGCCGCATCATTG+GGG	0.672900	5:-53885220	None:intergenic
CAAATTCAGTACGAAACGCA+CGG	0.681403	5:+53882109	MsaT027883.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	53881998	53886448	53881998	ID=MsaG027883
Chr5	mRNA	53881998	53886448	53881998	ID=MsaT027883.1;Parent=MsaG027883
Chr5	exon	53881998	53882276	53881998	ID=MsaT027883.1.exon1;Parent=MsaT027883.1
Chr5	CDS	53881998	53882276	53881998	ID=cds.MsaT027883.1;Parent=MsaT027883.1
Chr5	exon	53882494	53882577	53882494	ID=MsaT027883.1.exon2;Parent=MsaT027883.1
Chr5	CDS	53882494	53882577	53882494	ID=cds.MsaT027883.1;Parent=MsaT027883.1
Chr5	exon	53883388	53883521	53883388	ID=MsaT027883.1.exon3;Parent=MsaT027883.1
Chr5	CDS	53883388	53883521	53883388	ID=cds.MsaT027883.1;Parent=MsaT027883.1
Chr5	exon	53884899	53885006	53884899	ID=MsaT027883.1.exon4;Parent=MsaT027883.1
Chr5	CDS	53884899	53885006	53884899	ID=cds.MsaT027883.1;Parent=MsaT027883.1
Chr5	exon	53885188	53885293	53885188	ID=MsaT027883.1.exon5;Parent=MsaT027883.1
Chr5	CDS	53885188	53885293	53885188	ID=cds.MsaT027883.1;Parent=MsaT027883.1
Chr5	exon	53886043	53886102	53886043	ID=MsaT027883.1.exon6;Parent=MsaT027883.1
Chr5	CDS	53886043	53886102	53886043	ID=cds.MsaT027883.1;Parent=MsaT027883.1
Chr5	exon	53886356	53886448	53886356	ID=MsaT027883.1.exon7;Parent=MsaT027883.1
Chr5	CDS	53886356	53886448	53886356	ID=cds.MsaT027883.1;Parent=MsaT027883.1

Gene Sequence

>MsaT027883.1

ATGGAACCACCAATGTACGAACACTCTCAACCTTTGAACACCACAGTACCAATCACCGCCGGCGAAAGCGACGACGGTTCCGGTCCCGACGCCGGCATCGACGCTCAACATCAAATTCAGTACGAAACGCACGGTATGGATGATTCCAACTCCGATGCTGTTTACGGCAACGGCGGCGAAAATCCTGAATTTGCACTTCAAAGTTTTGATGAATCTGATCAGCTTACGCTGTCGTTTCGTGGGCAAGTTTATGTCTTTGACTCTGTTACGCCTGCTAAGGTTCAATCGGTGTTGTTACTGTTGGGTGGATGTGAACAACCTGATGCTGGTGTGAATGCGGTGCCTCAACAAAGTTTGAGGGTGGAATCAATGGATTTTCCTACAAAATATAGTCAACTACATCGAGAAGCCTCATTACTTAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGATAAGAAAGTTAGATATGAAGTACGTCAAGAAGTTGCACTCAGGATGCAGCGAAAGAAGGGTCAATTTACTACATCTAAGAAACAAGATGGGTCCAATAGTTGTGGTACAGACCAGGATTCTAGCCAGGATGCCAGTCCATCAGAAATCTCTTGCACACATTGTGGCACAAGCTCAAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGGTGTCTTGAGAGACCTTTCCAAGAGACATCAGGAATTATCTACTGTACCTGTTGAGCAGGTTGATCAAGGTAACAACTCAGACTGTGGAACTACAACTATCCCTGCACACAACATCACTCCTATTGAGCAACCATCTACAACTATTTGCTAG

Protein sequence

>MsaT027883.1

MEPPMYEHSQPLNTTVPITAGESDDGSGPDAGIDAQHQIQYETHGMDDSNSDAVYGNGGENPEFALQSFDESDQLTLSFRGQVYVFDSVTPAKVQSVLLLLGGCEQPDAGVNAVPQQSLRVESMDFPTKYSQLHREASLLRFRQKRKERCFDKKVRYEVRQEVALRMQRKKGQFTTSKKQDGSNSCGTDQDSSQDASPSEISCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGVLRDLSKRHQELSTVPVEQVDQGNNSDCGTTTIPAHNITPIEQPSTTIC*