AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027907

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027907 MtrunA17_Chr5g0427921 100.000 61 0 0 1 61 1 61 1.37e-39 124
MsaG027907 MtrunA17_Chr2g0279821 86.667 60 8 0 1 60 1 60 4.75e-30 105
MsaG027907 MtrunA17_Chr1g0173161 73.770 61 16 0 1 61 1 61 9.04e-30 100
MsaG027907 MtrunA17_Chr4g0049541 78.333 60 13 0 1 60 1 60 2.60e-29 102
MsaG027907 MtrunA17_Chr4g0020221 75.000 60 15 0 1 60 1 60 3.96e-28 100
MsaG027907 MtrunA17_Chr5g0411691 81.667 60 11 0 1 60 1 60 4.50e-27 97.4
MsaG027907 MtrunA17_Chr5g0427401 68.333 60 19 0 1 60 1 60 8.99e-26 94.0
MsaG027907 MtrunA17_Chr8g0351041 68.333 60 19 0 1 60 1 60 9.51e-26 92.0
MsaG027907 MtrunA17_Chr7g0246431 70.000 60 18 0 1 60 1 60 1.33e-25 93.2
MsaG027907 MtrunA17_Chr7g0246381 65.000 60 21 0 1 60 1 60 1.37e-25 89.0
MsaG027907 MtrunA17_Chr3g0077501 65.000 60 21 0 1 60 1 60 2.12e-25 92.8
MsaG027907 MtrunA17_Chr4g0061671 63.333 60 22 0 1 60 1 60 2.42e-25 91.7
MsaG027907 MtrunA17_Chr3g0097101 65.000 60 21 0 1 60 16 75 2.90e-25 92.8
MsaG027907 MtrunA17_Chr4g0057151 66.667 60 20 0 1 60 1 60 3.28e-25 92.0
MsaG027907 MtrunA17_Chr2g0284911 65.000 60 21 0 1 60 16 75 6.49e-25 92.4
MsaG027907 MtrunA17_Chr7g0220111 65.000 60 21 0 1 60 1 60 7.02e-25 92.0
MsaG027907 MtrunA17_Chr8g0351031 66.667 60 20 0 1 60 1 60 1.10e-24 90.9
MsaG027907 MtrunA17_Chr8g0380021 63.333 60 22 0 1 60 17 76 1.42e-24 91.3
MsaG027907 MtrunA17_Chr8g0377561 63.793 58 21 0 1 58 1 58 1.45e-24 87.4
MsaG027907 MtrunA17_Chr3g0142191 65.000 60 21 0 1 60 1 60 1.67e-24 90.5
MsaG027907 MtrunA17_Chr2g0308251 59.322 59 24 0 1 59 1 59 1.76e-24 86.7
MsaG027907 MtrunA17_Chr5g0412461 64.407 59 21 0 1 59 1 59 8.44e-24 89.0
MsaG027907 MtrunA17_Chr4g0049901 63.333 60 22 0 1 60 27 86 1.95e-23 88.2
MsaG027907 MtrunA17_Chr3g0125241 57.627 59 25 0 1 59 26 84 3.10e-23 87.0
MsaG027907 MtrunA17_Chr3g0122251 63.333 60 22 0 1 60 1 60 4.05e-23 87.4
MsaG027907 MtrunA17_Chr8g0351051 67.797 59 19 0 1 59 1 59 5.12e-23 87.4
MsaG027907 MtrunA17_Chr4g0018421 66.102 59 20 0 1 59 1 59 8.55e-23 85.5
MsaG027907 MtrunA17_Chr6g0474371 63.333 60 22 0 1 60 1 60 1.25e-22 85.1
MsaG027907 MtrunA17_Chr6g0455511 63.333 60 22 0 1 60 1 60 3.16e-22 85.1
MsaG027907 MtrunA17_Chr5g0420091 66.102 59 20 0 1 59 1 59 5.04e-22 84.0
MsaG027907 MtrunA17_Chr1g0159661 55.000 60 27 0 1 60 1 60 9.67e-22 82.4
MsaG027907 MtrunA17_Chr1g0204111 63.333 60 22 0 1 60 17 76 9.87e-22 84.0
MsaG027907 MtrunA17_Chr5g0425191 57.377 61 26 0 1 61 1 61 1.66e-21 79.7
MsaG027907 MtrunA17_Chr5g0420081 61.017 59 23 0 1 59 1 59 1.94e-21 82.8
MsaG027907 MtrunA17_Chr8g0366231 59.322 59 24 0 1 59 1 59 1.94e-21 82.8
MsaG027907 MtrunA17_Chr1g0164791 64.407 59 21 0 1 59 1 59 2.16e-21 82.8
MsaG027907 MtrunA17_Chr5g0412271 64.407 59 21 0 1 59 1 59 2.31e-21 82.4
MsaG027907 MtrunA17_Chr4g0061691 61.017 59 23 0 1 59 1 59 2.70e-21 82.4
MsaG027907 MtrunA17_Chr1g0166611 71.429 49 14 0 13 61 17 65 8.25e-21 79.0
MsaG027907 MtrunA17_Chr4g0044071 54.098 61 28 0 1 61 1 61 1.35e-20 77.8
MsaG027907 MtrunA17_Chr7g0220121 57.627 59 25 0 1 59 1 59 2.21e-20 80.5
MsaG027907 MtrunA17_Chr5g0404951 55.932 59 26 0 1 59 1 59 3.77e-19 76.6
MsaG027907 MtrunA17_Chr3g0134451 57.377 61 26 0 1 61 1 61 3.87e-19 77.8
MsaG027907 MtrunA17_Chr1g0175611 55.000 60 27 0 1 60 1 60 5.62e-18 72.4
MsaG027907 MtrunA17_Chr8g0376821 53.333 60 28 0 1 60 1 60 6.99e-18 72.4
MsaG027907 MtrunA17_Chr8g0357771 56.667 60 26 0 1 60 1 60 1.96e-17 71.2
MsaG027907 MtrunA17_Chr1g0175601 55.000 60 27 0 1 60 1 60 2.56e-17 70.9
MsaG027907 MtrunA17_Chr4g0052061 53.333 60 28 0 1 60 1 60 3.42e-17 70.1
MsaG027907 MtrunA17_Chr1g0169761 53.333 60 28 0 1 60 1 60 3.94e-17 70.5
MsaG027907 MtrunA17_Chr1g0180591 51.667 60 29 0 1 60 1 60 4.83e-17 70.1
MsaG027907 MtrunA17_Chr3g0099421 52.632 57 27 0 2 58 34 90 5.93e-16 68.6
MsaG027907 MtrunA17_Chr2g0333981 46.667 60 32 0 1 60 11 70 7.01e-16 67.0
MsaG027907 MtrunA17_Chr8g0379021 48.276 58 30 0 2 59 12 69 1.05e-15 66.6
MsaG027907 MtrunA17_Chr2g0292791 50.877 57 28 0 2 58 9 65 1.75e-15 67.0
MsaG027907 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 2.36e-15 67.8
MsaG027907 MtrunA17_Chr5g0417661 49.057 53 27 0 1 53 56 108 2.61e-15 64.7
MsaG027907 MtrunA17_Chr2g0325971 47.368 57 30 0 2 58 9 65 3.09e-15 66.2
MsaG027907 MtrunA17_Chr4g0052081 46.667 60 32 0 1 60 1 60 3.17e-15 65.5
MsaG027907 MtrunA17_Chr1g0208581 49.123 57 29 0 2 58 9 65 3.37e-15 66.2
MsaG027907 MtrunA17_Chr8g0356071 51.667 60 29 0 1 60 1 60 3.62e-15 65.1
MsaG027907 MtrunA17_Chr1g0208561 47.368 57 30 0 2 58 9 65 3.98e-15 66.2
MsaG027907 MtrunA17_Chr5g0422421 52.632 57 27 0 2 58 9 65 4.48e-15 66.2
MsaG027907 MtrunA17_Chr3g0089141 47.368 57 30 0 2 58 9 65 4.66e-15 65.9
MsaG027907 MtrunA17_Chr1g0206991 47.458 59 31 0 2 60 9 67 6.70e-15 64.7
MsaG027907 MtrunA17_Chr1g0206721 49.123 57 29 0 2 58 9 65 7.63e-15 65.5
MsaG027907 MtrunA17_Chr4g0074101 51.724 58 28 0 1 58 1 58 8.62e-15 64.7
MsaG027907 MtrunA17_Chr3g0099411 49.123 57 29 0 2 58 9 65 9.17e-15 65.1
MsaG027907 MtrunA17_Chr5g0419601 50.000 58 29 0 1 58 8 65 1.08e-14 65.1
MsaG027907 MtrunA17_Chr2g0317481 49.123 57 29 0 2 58 9 65 1.50e-14 64.7
MsaG027907 MtrunA17_Chr2g0317451 49.123 57 29 0 2 58 9 65 1.52e-14 64.7
MsaG027907 MtrunA17_Chr8g0355091 49.123 57 29 0 2 58 9 65 1.53e-14 64.7
MsaG027907 MtrunA17_Chr1g0149391 50.877 57 28 0 2 58 9 65 1.58e-14 64.7
MsaG027907 MtrunA17_Chr1g0188671 47.368 57 30 0 2 58 47 103 1.64e-14 65.1
MsaG027907 MtrunA17_Chr1g0187361 47.368 57 30 0 2 58 9 65 1.72e-14 64.7
MsaG027907 MtrunA17_Chr1g0206701 49.123 57 29 0 2 58 9 65 2.63e-14 63.9
MsaG027907 MtrunA17_Chr5g0422941 49.123 57 29 0 2 58 9 65 3.34e-14 63.9
MsaG027907 MtrunA17_Chr4g0018951 59.091 44 18 0 14 57 24 67 2.20e-13 60.5
MsaG027907 MtrunA17_Chr3g0085241 48.276 58 30 0 1 58 40 97 2.29e-13 61.6
MsaG027907 MtrunA17_Chr3g0119901 48.276 58 30 0 1 58 8 65 3.26e-13 60.8
MsaG027907 MtrunA17_Chr2g0300421 42.373 59 34 0 2 60 9 67 8.25e-13 59.3
MsaG027907 MtrunA17_Chr3g0111841 47.059 51 27 0 8 58 2 52 9.77e-13 56.6
MsaG027907 MtrunA17_Chr3g0089151 40.678 59 35 0 2 60 9 67 1.50e-12 57.8
MsaG027907 MtrunA17_Chr2g0300441 44.068 59 31 1 2 58 7 65 1.78e-12 59.3
MsaG027907 MtrunA17_Chr6g0457851 48.980 49 25 0 1 49 11 59 5.04e-12 58.5
MsaG027907 MtrunA17_Chr6g0449851 46.939 49 26 0 1 49 1 49 2.73e-11 56.2
MsaG027907 MtrunA17_Chr4g0071601 46.667 60 32 0 1 60 11 70 3.61e-11 55.1
MsaG027907 MtrunA17_Chr1g0212151 46.939 49 26 0 1 49 1 49 5.05e-11 55.8
MsaG027907 MtrunA17_Chr1g0206691 47.917 48 25 0 11 58 1 48 8.08e-11 54.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027907 AT3G57230.2 86.667 60 8 0 1 60 1 60 2.30e-33 111
MsaG027907 AT2G14210.1 88.333 60 7 0 1 60 1 60 1.76e-32 111
MsaG027907 AT2G14210.2 88.333 60 7 0 1 60 1 60 2.41e-32 111
MsaG027907 AT4G37940.4 85.000 60 9 0 1 60 1 60 2.40e-31 108
MsaG027907 AT4G37940.1 85.000 60 9 0 1 60 1 60 2.45e-31 108
MsaG027907 AT4G37940.3 85.000 60 9 0 1 60 1 60 2.99e-31 107
MsaG027907 AT3G57230.1 86.667 60 8 0 1 60 1 60 1.17e-29 104
MsaG027907 AT3G57230.4 86.667 60 8 0 1 60 1 60 1.17e-29 104
MsaG027907 AT2G22630.1 80.000 60 12 0 1 60 1 60 1.07e-28 101
MsaG027907 AT2G22630.2 80.000 60 12 0 1 60 1 60 1.07e-28 101
MsaG027907 AT3G57390.3 74.576 59 15 0 1 59 1 59 8.28e-28 99.4
MsaG027907 AT3G57390.1 74.576 59 15 0 1 59 1 59 1.83e-27 99.4
MsaG027907 AT2G45660.2 71.667 60 17 0 1 60 1 60 1.88e-26 94.4
MsaG027907 AT5G13790.1 68.333 60 19 0 1 60 1 60 2.35e-26 96.7
MsaG027907 AT5G13790.2 68.333 60 19 0 1 60 1 60 2.50e-26 96.7
MsaG027907 AT4G09960.1 66.667 60 20 0 1 60 1 60 5.89e-26 94.7
MsaG027907 AT4G09960.2 66.667 60 20 0 1 60 1 60 5.99e-26 94.4
MsaG027907 AT4G09960.6 66.667 60 20 0 1 60 2 61 6.15e-26 94.7
MsaG027907 AT4G09960.5 66.667 60 20 0 1 60 11 70 7.45e-26 94.7
MsaG027907 AT2G45660.1 71.667 60 17 0 1 60 1 60 7.59e-26 94.0
MsaG027907 AT4G09960.3 66.667 60 20 0 1 60 27 86 1.18e-25 94.7
MsaG027907 AT4G09960.4 66.667 60 20 0 1 60 96 155 3.06e-25 94.7
MsaG027907 AT4G22950.2 68.333 60 19 0 1 60 1 60 3.11e-25 91.7
MsaG027907 AT2G03710.3 63.333 60 22 0 1 60 1 60 5.39e-25 91.3
MsaG027907 AT4G11880.2 68.333 60 19 0 1 60 1 60 5.43e-25 90.9
MsaG027907 AT4G11880.3 68.333 60 19 0 1 60 1 60 5.43e-25 90.9
MsaG027907 AT2G22540.3 68.333 60 19 0 1 60 1 60 7.75e-25 92.0
MsaG027907 AT2G22540.1 68.333 60 19 0 1 60 1 60 7.75e-25 92.0
MsaG027907 AT2G42830.1 65.000 60 21 0 1 60 16 75 1.01e-24 92.0
MsaG027907 AT4G22950.3 68.333 60 19 0 1 60 1 60 1.04e-24 91.3
MsaG027907 AT4G22950.1 68.333 60 19 0 1 60 1 60 1.04e-24 91.3
MsaG027907 AT2G42830.2 65.000 60 21 0 1 60 16 75 1.05e-24 92.0
MsaG027907 AT4G11880.4 68.333 60 19 0 1 60 1 60 1.20e-24 91.3
MsaG027907 AT4G11880.1 68.333 60 19 0 1 60 1 60 1.20e-24 91.3
MsaG027907 AT3G02310.2 63.333 60 22 0 1 60 1 60 1.31e-24 90.5
MsaG027907 AT5G62165.14 63.333 60 22 0 1 60 1 60 1.86e-24 87.8
MsaG027907 AT5G62165.17 63.333 60 22 0 1 60 1 60 1.95e-24 89.0
MsaG027907 AT5G62165.12 63.333 60 22 0 1 60 1 60 1.95e-24 89.0
MsaG027907 AT5G62165.11 63.333 60 22 0 1 60 1 60 1.95e-24 89.0
MsaG027907 AT5G62165.6 63.333 60 22 0 1 60 1 60 1.98e-24 89.0
MsaG027907 AT5G62165.9 63.333 60 22 0 1 60 1 60 1.98e-24 89.0
MsaG027907 AT5G62165.7 63.333 60 22 0 1 60 1 60 1.98e-24 89.0
MsaG027907 AT5G62165.8 63.333 60 22 0 1 60 1 60 1.98e-24 89.0
MsaG027907 AT5G62165.13 63.333 60 22 0 1 60 1 60 1.98e-24 89.0
MsaG027907 AT5G51860.2 66.667 60 20 0 1 60 1 60 2.25e-24 90.1
MsaG027907 AT5G51860.1 66.667 60 20 0 1 60 1 60 2.56e-24 90.1
MsaG027907 AT5G23260.3 62.295 61 23 0 1 61 1 61 3.02e-24 90.5
MsaG027907 AT4G18960.1 64.407 59 21 0 2 60 18 76 3.63e-24 90.5
MsaG027907 AT1G71692.1 66.102 59 20 0 1 59 1 59 4.47e-24 89.4
MsaG027907 AT2G22540.2 70.175 57 17 0 1 57 1 57 6.23e-24 89.7
MsaG027907 AT5G62165.10 63.333 60 22 0 1 60 1 60 6.96e-24 88.6
MsaG027907 AT5G62165.4 63.333 60 22 0 1 60 1 60 6.96e-24 88.6
MsaG027907 AT5G23260.2 62.295 61 23 0 1 61 1 61 7.57e-24 89.7
MsaG027907 AT5G62165.3 63.333 60 22 0 1 60 1 60 8.08e-24 89.0
MsaG027907 AT5G62165.1 63.333 60 22 0 1 60 1 60 8.08e-24 89.0
MsaG027907 AT5G62165.2 63.333 60 22 0 1 60 1 60 8.08e-24 89.0
MsaG027907 AT3G02310.1 63.333 60 22 0 1 60 1 60 1.46e-23 89.0
MsaG027907 AT5G23260.1 62.295 61 23 0 1 61 17 77 2.14e-23 89.0
MsaG027907 AT5G23260.4 62.295 61 23 0 1 61 17 77 2.32e-23 89.0
MsaG027907 AT1G24260.3 63.333 60 22 0 1 60 1 60 3.68e-23 87.8
MsaG027907 AT2G45650.1 67.797 59 19 0 1 59 1 59 3.97e-23 87.8
MsaG027907 AT3G61120.1 62.712 59 22 0 1 59 1 59 4.22e-23 87.8
MsaG027907 AT3G58780.2 65.574 61 21 0 1 61 16 76 4.55e-23 87.4
MsaG027907 AT5G60910.1 59.322 59 24 0 1 59 1 59 7.80e-23 87.0
MsaG027907 AT4G24540.1 62.295 61 23 0 1 61 1 61 9.01e-23 86.3
MsaG027907 AT5G10140.4 59.322 59 24 0 1 59 1 59 9.19e-23 85.5
MsaG027907 AT5G20240.2 62.069 58 22 0 1 58 1 58 1.06e-22 84.3
MsaG027907 AT5G15800.1 63.333 60 22 0 1 60 1 60 1.09e-22 86.7
MsaG027907 AT5G10140.2 59.322 59 24 0 1 59 1 59 1.11e-22 84.7
MsaG027907 AT5G15800.2 63.333 60 22 0 1 60 1 60 1.20e-22 87.0
MsaG027907 AT1G24260.2 63.333 60 22 0 1 60 1 60 1.47e-22 86.3
MsaG027907 AT1G24260.1 63.333 60 22 0 1 60 1 60 1.49e-22 86.3
MsaG027907 AT5G10140.3 59.322 59 24 0 1 59 1 59 1.56e-22 85.1
MsaG027907 AT3G58780.3 66.102 59 20 0 1 59 16 74 1.82e-22 86.7
MsaG027907 AT5G51870.2 57.377 61 26 0 1 61 1 61 2.02e-22 84.3
MsaG027907 AT3G58780.4 66.102 59 20 0 1 59 16 74 2.14e-22 86.7
MsaG027907 AT2G03710.2 63.333 60 22 0 1 60 1 60 2.76e-22 85.9
MsaG027907 AT2G03710.1 63.333 60 22 0 1 60 1 60 3.47e-22 85.5
MsaG027907 AT5G51870.1 57.377 61 26 0 1 61 1 61 3.79e-22 84.3
MsaG027907 AT5G51870.5 57.377 61 26 0 1 61 24 84 4.45e-22 84.0
MsaG027907 AT3G58780.1 66.102 59 20 0 1 59 16 74 4.74e-22 85.1
MsaG027907 AT3G58780.5 66.102 59 20 0 1 59 22 80 4.86e-22 85.1
MsaG027907 AT3G30260.1 57.627 59 25 0 1 59 1 59 5.71e-22 84.7
MsaG027907 AT5G51870.4 57.377 61 26 0 1 61 1 61 6.53e-22 84.0
MsaG027907 AT5G51870.3 57.377 61 26 0 1 61 11 71 9.43e-22 84.0
MsaG027907 AT5G65070.4 57.627 59 25 0 1 59 1 59 1.61e-21 81.3
MsaG027907 AT3G54340.1 64.407 59 21 0 1 59 1 59 1.91e-21 83.2
MsaG027907 AT5G65050.2 57.627 59 25 0 1 59 1 59 3.13e-21 81.3
MsaG027907 AT5G65070.1 57.627 59 25 0 1 59 1 59 3.34e-21 81.6
MsaG027907 AT5G65070.5 57.627 59 25 0 1 59 1 59 5.91e-21 81.3
MsaG027907 AT5G65070.2 57.627 59 25 0 1 59 1 59 7.63e-21 81.6
MsaG027907 AT5G65050.1 57.627 59 25 0 1 59 1 59 7.66e-21 80.5
MsaG027907 AT5G65050.5 57.627 59 25 0 1 59 1 59 7.73e-21 80.5
MsaG027907 AT5G10140.1 59.322 59 24 0 1 59 1 59 8.00e-21 80.9
MsaG027907 AT5G65050.3 57.627 59 25 0 1 59 1 59 9.00e-21 80.5
MsaG027907 AT1G26310.1 57.627 59 25 0 1 59 1 59 9.82e-21 81.6
MsaG027907 AT5G65070.3 57.627 59 25 0 1 59 1 59 1.07e-20 81.3
MsaG027907 AT1G69120.1 57.627 59 25 0 1 59 1 59 2.44e-20 80.9
MsaG027907 AT1G69120.2 57.627 59 25 0 1 59 1 59 3.33e-20 80.1
MsaG027907 AT5G20240.1 63.158 57 21 0 1 57 1 57 4.03e-20 79.3
MsaG027907 AT5G65060.3 57.627 59 25 0 1 59 1 59 6.39e-20 78.2
MsaG027907 AT5G65060.2 57.627 59 25 0 1 59 1 59 8.07e-20 77.8
MsaG027907 AT5G65060.1 57.627 59 25 0 1 59 1 59 9.03e-20 78.2
MsaG027907 AT5G65080.3 57.627 59 25 0 1 59 8 66 1.87e-19 77.0
MsaG027907 AT5G65080.2 57.627 59 25 0 1 59 8 66 2.48e-19 77.0
MsaG027907 AT1G22130.1 58.621 58 24 0 1 58 1 58 3.91e-19 78.6
MsaG027907 AT1G77980.1 58.621 58 24 0 1 58 1 58 4.93e-19 78.2
MsaG027907 AT3G66656.1 55.172 58 26 0 1 58 1 58 9.91e-18 72.4
MsaG027907 AT1G77080.12 61.017 59 23 0 1 59 1 59 1.79e-17 70.9
MsaG027907 AT1G77080.11 61.017 59 23 0 1 59 1 59 2.25e-17 71.2
MsaG027907 AT1G77080.5 61.017 59 23 0 1 59 1 59 2.46e-17 71.2
MsaG027907 AT1G77080.2 61.017 59 23 0 1 59 1 59 4.76e-17 70.9
MsaG027907 AT1G77080.4 61.017 59 23 0 1 59 1 59 4.90e-17 70.9
MsaG027907 AT1G18750.4 50.877 57 28 0 1 57 1 57 7.64e-17 72.4
MsaG027907 AT1G18750.1 50.877 57 28 0 1 57 1 57 7.83e-17 72.4
MsaG027907 AT1G18750.3 50.877 57 28 0 1 57 1 57 8.23e-17 72.4
MsaG027907 AT1G77080.8 61.017 59 23 0 1 59 1 59 1.12e-16 70.5
MsaG027907 AT4G37435.1 52.632 57 27 0 1 57 1 57 2.26e-16 68.9
MsaG027907 AT2G34440.1 51.724 58 28 0 1 58 1 58 2.73e-16 68.6
MsaG027907 AT1G72350.1 53.448 58 27 0 2 59 43 100 3.98e-16 68.9
MsaG027907 AT2G03060.3 49.180 61 31 0 1 61 1 61 2.57e-15 68.2
MsaG027907 AT2G03060.7 49.180 61 31 0 1 61 1 61 2.57e-15 68.2
MsaG027907 AT2G03060.1 49.180 61 31 0 1 61 1 61 2.57e-15 68.2
MsaG027907 AT1G01530.1 50.000 58 29 0 1 58 6 63 3.31e-15 67.0
MsaG027907 AT2G03060.2 49.180 61 31 0 1 61 1 61 4.29e-15 67.4
MsaG027907 AT1G31140.2 50.847 59 29 0 1 59 1 59 6.97e-15 65.5
MsaG027907 AT1G31140.1 50.847 59 29 0 1 59 1 59 7.14e-15 65.5
MsaG027907 AT1G47760.1 50.000 58 29 0 1 58 1 58 9.40e-15 64.7
MsaG027907 AT1G77950.3 50.000 58 29 0 1 58 1 58 1.09e-14 65.5
MsaG027907 AT1G77950.2 50.000 58 29 0 1 58 1 58 1.09e-14 65.5
MsaG027907 AT1G77950.1 50.000 58 29 0 1 58 1 58 1.09e-14 65.5
MsaG027907 AT1G77950.4 50.000 58 29 0 1 58 1 58 1.09e-14 65.5
MsaG027907 AT5G60440.1 50.877 57 28 0 2 58 7 63 1.25e-14 65.9
MsaG027907 AT2G24840.1 51.724 58 28 0 1 58 62 119 2.56e-14 64.7
MsaG027907 AT3G04100.1 44.068 59 33 0 2 60 14 72 6.38e-14 63.2
MsaG027907 AT1G69540.2 50.943 53 26 0 1 53 1 53 6.59e-14 64.3
MsaG027907 AT1G69540.1 50.943 53 26 0 1 53 1 53 1.04e-13 63.5
MsaG027907 AT1G65360.1 43.103 58 33 0 1 58 6 63 1.74e-12 59.3
MsaG027907 AT4G36590.1 47.368 57 30 0 2 58 7 63 2.03e-12 59.3
MsaG027907 AT2G26320.1 45.283 53 29 0 1 53 17 69 2.75e-12 56.6
MsaG027907 AT1G29962.1 45.763 59 32 0 2 60 8 66 4.85e-12 57.8
MsaG027907 AT1G28460.1 45.763 59 32 0 2 60 8 66 1.18e-11 56.6

Find 11 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATCAATCCTCCTTATC+TGG 0.261059 5:-54282564 None:intergenic
TTAAACTAGTTACCTGGTGC+TGG 0.499040 5:-54282719 None:intergenic
TTGGAGATAGAAATGGGAAG+AGG 0.500409 5:+54282535 None:intergenic
TCTATGATTTCGCCAGCACC+AGG 0.543769 5:+54282707 MsaT027907.1:CDS
AAGGAATGGATTGTTGAAGA+AGG 0.570555 5:+54282618 MsaT027907.1:CDS
GAGGAAAGATCCAGATAAGG+AGG 0.581833 5:+54282554 MsaT027907.1:CDS
TAAACTTTAAACTAGTTACC+TGG 0.582917 5:-54282725 None:intergenic
GGATTGATAATTCAACGAGC+AGG 0.583950 5:+54282575 MsaT027907.1:CDS
TTTGTGTGATGCTGAGGTTG+GGG 0.592684 5:+54282657 MsaT027907.1:CDS
GAAGAGGAAAGATCCAGATA+AGG 0.608596 5:+54282551 MsaT027907.1:CDS
TGGATTGTTGAAGAAGGCGA+AGG 0.652096 5:+54282624 MsaT027907.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 54282547 54282732 54282547 ID=MsaG027907
Chr5 mRNA 54282547 54282732 54282547 ID=MsaT027907.1;Parent=MsaG027907
Chr5 exon 54282547 54282732 54282547 ID=MsaT027907.1.exon1;Parent=MsaT027907.1
Chr5 CDS 54282547 54282732 54282547 ID=cds.MsaT027907.1;Parent=MsaT027907.1
Gene Sequence

>MsaT027907.1

ATGGGAAGAGGAAAGATCCAGATAAGGAGGATTGATAATTCAACGAGCAGGCAAGTAACTTTTTCGAAGCGAAGGAATGGATTGTTGAAGAAGGCGAAGGAACTTGCGATTTTGTGTGATGCTGAGGTTGGGGTTATGATCTTCTCCAGCACTGCAAAACTCTATGATTTCGCCAGCACCAGGTAA
Protein sequence

>MsaT027907.1

MGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTR*