AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027962

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027962 MtrunA17_Chr5g0428401 93.834 1703 59 7 1 1664 1 1696 0.0 3222
MsaG027962 MtrunA17_Chr1g0168031 30.743 296 147 11 494 782 590 834 2.47e-32 137
MsaG027962 MtrunA17_Chr1g0168031 26.562 320 181 12 1321 1622 870 1153 7.95e-20 97.1
MsaG027962 MtrunA17_Chr2g0320751 28.383 303 167 6 491 789 474 730 2.55e-31 134
MsaG027962 MtrunA17_Chr2g0320751 29.412 289 161 11 1326 1608 751 1002 2.05e-24 111
MsaG027962 MtrunA17_Chr1g0212331 27.041 392 205 13 485 838 393 741 1.31e-23 108
MsaG027962 MtrunA17_Chr1g0212331 32.877 146 83 3 1460 1594 868 1009 7.48e-17 87.0
MsaG027962 MtrunA17_Chr2g0281601 26.957 345 184 9 476 782 637 951 8.37e-23 106
MsaG027962 MtrunA17_Chr2g0281601 32.283 127 82 2 1468 1594 1150 1272 7.53e-15 80.9
MsaG027962 MtrunA17_Chr7g0255821 27.083 336 188 8 445 780 251 529 1.01e-22 105
MsaG027962 MtrunA17_Chr7g0255821 26.471 272 173 8 1355 1622 573 821 5.86e-18 90.5
MsaG027962 MtrunA17_Chr4g0024921 28.315 279 169 10 1352 1622 679 934 2.35e-21 101
MsaG027962 MtrunA17_Chr8g0384531 29.032 155 105 2 1468 1622 758 907 3.06e-15 82.0
MsaG027962 MtrunA17_Chr1g0163011 32.192 146 93 2 1449 1594 571 710 4.24e-15 80.9
MsaG027962 MtrunA17_Chr5g0403921 27.647 170 116 3 1449 1616 507 671 1.94e-13 75.5
MsaG027962 MtrunA17_Chr4g0066651 36.170 141 81 4 1449 1587 1309 1442 3.07e-13 75.5
MsaG027962 MtrunA17_Chr7g0257101 25.166 302 165 10 494 784 628 879 5.85e-13 74.7
MsaG027962 MtrunA17_Chr7g0257101 31.098 164 103 4 1460 1621 1204 1359 1.37e-12 73.2
MsaG027962 MtrunA17_Chr3g0137091 29.091 165 105 5 1458 1617 619 776 8.60e-13 73.9
MsaG027962 MtrunA17_Chr1g0183681 27.397 219 138 7 1409 1621 698 901 9.48e-13 73.9
MsaG027962 MtrunA17_Chr4g0017211 33.553 152 87 6 1468 1609 1830 1977 2.91e-12 72.4
MsaG027962 MtrunA17_Chr5g0393461 32.609 138 88 2 1453 1589 542 675 4.78e-12 71.2
MsaG027962 MtrunA17_Chr3g0083491 25.338 296 167 13 493 780 729 978 8.26e-12 70.9
MsaG027962 MtrunA17_Chr4g0040301 29.012 162 105 4 1449 1607 381 535 1.66e-11 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027962 AT2G40770.2 57.640 1695 642 28 1 1661 1 1653 0.0 1837
MsaG027962 AT2G40770.1 57.640 1695 642 28 1 1661 1 1653 0.0 1837
MsaG027962 AT2G40770.3 57.640 1695 642 28 1 1661 1 1653 0.0 1837
MsaG027962 AT5G22750.1 27.938 519 242 15 284 789 344 743 1.27e-42 171
MsaG027962 AT5G22750.1 30.882 272 150 11 1340 1608 779 1015 1.42e-23 109
MsaG027962 AT5G43530.1 32.000 300 142 10 492 782 739 985 5.11e-32 137
MsaG027962 AT5G43530.1 29.150 247 127 7 1355 1591 1040 1248 1.26e-21 103
MsaG027962 AT1G61140.1 25.641 468 231 15 349 782 571 955 1.38e-28 125
MsaG027962 AT1G61140.1 30.769 156 102 3 1468 1621 1125 1276 1.57e-15 83.2
MsaG027962 AT1G61140.2 25.641 468 231 15 349 782 578 962 1.50e-28 125
MsaG027962 AT1G61140.3 25.641 468 231 15 349 782 413 797 1.51e-28 125
MsaG027962 AT1G61140.3 30.769 156 102 3 1468 1621 967 1118 1.68e-15 83.2
MsaG027962 AT1G11100.1 29.568 301 151 9 493 782 632 882 3.28e-25 115
MsaG027962 AT1G11100.1 32.308 130 78 2 1468 1594 1073 1195 2.52e-15 82.8
MsaG027962 AT1G11100.5 29.568 301 151 9 493 782 489 739 3.58e-25 114
MsaG027962 AT1G11100.5 32.308 130 78 2 1468 1594 930 1052 2.73e-15 82.4
MsaG027962 AT1G50410.4 29.394 330 165 12 493 784 342 641 7.79e-25 113
MsaG027962 AT3G20010.4 26.056 426 218 12 349 724 296 674 1.04e-24 113
MsaG027962 AT3G20010.6 26.056 426 218 12 349 724 296 674 1.04e-24 113
MsaG027962 AT3G20010.8 26.056 426 218 12 349 724 296 674 1.04e-24 113
MsaG027962 AT1G50410.2 29.394 330 165 12 493 784 342 641 1.11e-24 113
MsaG027962 AT1G50410.2 33.333 138 85 3 1460 1594 817 950 1.57e-16 86.7
MsaG027962 AT1G50410.1 29.394 330 165 12 493 784 342 641 1.11e-24 113
MsaG027962 AT1G50410.1 33.333 138 85 3 1460 1594 817 950 1.57e-16 86.7
MsaG027962 AT1G50410.3 29.394 330 165 12 493 784 342 641 1.11e-24 113
MsaG027962 AT1G50410.3 33.333 138 85 3 1460 1594 817 950 1.57e-16 86.7
MsaG027962 AT3G20010.1 23.784 555 276 17 223 724 214 674 1.33e-24 112
MsaG027962 AT3G20010.1 35.772 123 75 2 1468 1590 894 1012 2.99e-16 85.5
MsaG027962 AT3G20010.5 23.784 555 276 17 223 724 214 674 1.33e-24 112
MsaG027962 AT3G20010.5 35.772 123 75 2 1468 1590 894 1012 2.99e-16 85.5
MsaG027962 AT3G20010.7 23.784 555 276 17 223 724 214 674 1.33e-24 112
MsaG027962 AT3G20010.7 35.772 123 75 2 1468 1590 894 1012 2.99e-16 85.5
MsaG027962 AT5G05130.1 26.687 326 177 11 491 807 355 627 2.02e-24 112
MsaG027962 AT5G05130.1 27.586 290 163 11 1325 1596 593 853 7.74e-20 97.1
MsaG027962 AT1G11100.4 28.012 332 160 12 493 782 632 926 5.45e-23 107
MsaG027962 AT1G11100.4 32.308 130 78 2 1468 1594 1117 1239 2.62e-15 82.8
MsaG027962 AT1G11100.3 28.012 332 160 12 493 782 489 783 5.82e-23 107
MsaG027962 AT1G11100.3 32.308 130 78 2 1468 1594 974 1096 2.83e-15 82.4
MsaG027962 AT1G11100.2 28.012 332 160 12 493 782 631 925 6.08e-23 107
MsaG027962 AT1G11100.2 32.308 130 78 2 1468 1594 1116 1238 2.64e-15 82.8
MsaG027962 AT3G20010.2 28.571 273 143 8 493 724 122 383 3.33e-22 104
MsaG027962 AT3G20010.2 34.646 127 79 2 1468 1594 603 725 2.09e-16 85.9
MsaG027962 AT3G20010.3 28.571 273 143 8 493 724 147 408 5.14e-22 103
MsaG027962 AT3G20010.3 34.646 127 79 2 1468 1594 628 750 2.01e-16 85.9
MsaG027962 AT1G05120.1 28.188 298 175 11 1337 1621 560 831 6.36e-22 103
MsaG027962 AT1G05120.2 28.188 298 175 11 1337 1621 603 874 9.39e-22 103
MsaG027962 AT3G16600.1 26.174 298 159 7 493 784 114 356 5.45e-20 97.1
MsaG027962 AT1G02670.6 32.768 177 112 4 1448 1622 492 663 1.17e-18 92.8
MsaG027962 AT1G02670.6 25.610 328 164 9 492 788 150 428 7.15e-18 90.1
MsaG027962 AT1G02670.3 32.768 177 112 4 1448 1622 519 690 1.18e-18 92.8
MsaG027962 AT1G02670.3 25.610 328 164 9 492 788 177 455 7.55e-18 90.1
MsaG027962 AT1G02670.7 32.768 177 112 4 1448 1622 496 667 2.44e-18 91.7
MsaG027962 AT1G02670.7 28.481 158 87 4 492 647 177 310 2.32e-11 69.3
MsaG027962 AT1G02670.1 32.768 177 112 4 1448 1622 507 678 2.63e-18 91.7
MsaG027962 AT1G02670.1 28.481 158 87 4 492 647 188 321 2.03e-11 69.3
MsaG027962 AT1G02670.4 26.923 260 132 6 492 720 177 409 4.80e-18 90.1
MsaG027962 AT1G02670.5 25.610 328 164 9 492 788 150 428 9.58e-18 89.7
MsaG027962 AT1G02670.5 33.884 121 76 2 1448 1568 492 608 2.19e-13 75.9
MsaG027962 AT1G02670.2 25.610 328 164 9 492 788 177 455 1.07e-17 89.7
MsaG027962 AT1G02670.2 33.884 121 76 2 1448 1568 519 635 2.27e-13 75.9
MsaG027962 AT5G63950.2 27.381 168 105 3 1427 1589 695 850 4.48e-15 81.6
MsaG027962 AT5G63950.1 27.381 168 105 3 1427 1589 712 867 4.71e-15 81.6
MsaG027962 AT2G02090.1 33.333 135 84 2 1460 1594 600 728 2.72e-14 79.0
MsaG027962 AT2G28290.1 30.088 226 138 7 1449 1664 1074 1289 3.50e-14 79.3
MsaG027962 AT2G28290.6 29.333 225 141 6 1449 1664 1075 1290 3.61e-14 79.3
MsaG027962 AT2G28290.5 30.088 226 138 7 1449 1664 1075 1290 3.62e-14 79.3
MsaG027962 AT2G28290.3 29.333 225 141 6 1449 1664 1074 1289 3.68e-14 79.3
MsaG027962 AT2G28290.4 29.333 225 141 6 1449 1664 1074 1289 3.68e-14 79.3
MsaG027962 AT2G28290.2 29.333 225 141 6 1449 1664 1074 1289 3.96e-14 79.0
MsaG027962 AT2G18760.3 27.570 214 144 6 1409 1621 749 952 6.40e-14 78.2
MsaG027962 AT2G18760.4 27.570 214 144 6 1409 1621 690 893 7.57e-14 77.8
MsaG027962 AT2G18760.1 27.570 214 144 6 1409 1621 690 893 7.57e-14 77.8
MsaG027962 AT2G18760.2 27.570 214 144 6 1409 1621 690 893 7.57e-14 77.8
MsaG027962 AT2G18760.7 27.570 214 144 6 1409 1621 690 893 7.57e-14 77.8
MsaG027962 AT2G18760.5 27.570 214 144 6 1409 1621 690 893 7.57e-14 77.8
MsaG027962 AT2G18760.6 27.570 214 144 6 1409 1621 690 893 7.57e-14 77.8
MsaG027962 AT4G31900.3 28.916 166 105 5 1449 1609 525 682 3.39e-13 75.9
MsaG027962 AT4G31900.2 28.916 166 105 5 1449 1609 484 641 3.68e-13 75.5
MsaG027962 AT4G31900.1 28.916 166 105 5 1449 1609 525 682 3.92e-13 75.5
MsaG027962 AT3G57300.1 25.817 306 158 13 494 784 636 887 1.41e-12 73.9
MsaG027962 AT3G57300.1 29.940 167 102 5 1460 1621 1218 1374 3.01e-11 69.3
MsaG027962 AT3G57300.4 25.817 306 158 13 494 784 636 887 1.41e-12 73.9
MsaG027962 AT3G57300.4 29.940 167 102 5 1460 1621 1218 1374 3.01e-11 69.3
MsaG027962 AT3G57300.3 25.817 306 158 13 494 784 636 887 1.73e-12 73.6
MsaG027962 AT2G25170.1 28.161 174 111 6 1449 1617 596 760 4.71e-12 72.0
MsaG027962 AT2G25170.4 28.161 174 111 6 1449 1617 596 760 4.71e-12 72.0
MsaG027962 AT2G25170.2 28.161 174 111 6 1449 1617 613 777 5.37e-12 71.6
MsaG027962 AT2G25170.3 28.161 174 111 6 1449 1617 622 786 5.51e-12 71.6
MsaG027962 AT3G19210.3 30.769 143 94 2 1453 1594 538 676 6.95e-12 71.2
MsaG027962 AT3G19210.2 30.769 143 94 2 1453 1594 536 674 8.35e-12 70.9
MsaG027962 AT3G19210.1 30.769 143 94 2 1453 1594 538 676 8.65e-12 70.9
MsaG027962 AT2G44980.1 27.551 196 133 4 1468 1661 386 574 1.21e-11 70.5
MsaG027962 AT3G54460.2 31.707 123 79 2 1468 1590 898 1015 1.80e-11 70.1
MsaG027962 AT5G66750.1 28.800 125 86 1 1465 1589 539 660 1.97e-11 69.7
MsaG027962 AT3G54460.1 31.707 123 79 2 1468 1590 1195 1312 2.55e-11 69.7
MsaG027962 AT3G57300.2 28.834 163 109 3 1460 1621 1251 1407 2.97e-11 69.3
MsaG027962 AT3G54280.1 28.125 160 108 3 1468 1624 1832 1987 8.27e-11 68.2
MsaG027962 AT3G54280.2 28.125 160 108 3 1468 1624 1863 2018 8.82e-11 67.8

Find 340 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCTGAAGTCATTATTTC+TGG 0.150465 5:+55046904 None:intergenic
CGCTCAATATCTTCATCTTT+TGG 0.158727 5:+55038486 None:intergenic
ACTTCGTCACCTTATGTATT+TGG 0.178005 5:-55046023 MsaT027962.1:CDS
CTATCTTGGTCTTGCTTATA+AGG 0.190614 5:+55040541 None:intergenic
ATATTTCTGAAGTTGTTCTT+AGG 0.207621 5:-55047374 MsaT027962.1:CDS
GGAAAAGAAAATAATGATTT+TGG 0.216645 5:-55047462 MsaT027962.1:CDS
TCCAAAGGAAAACAATTATC+TGG 0.225747 5:-55040291 MsaT027962.1:CDS
GGACCTGATGAAAGTGTTTC+TGG 0.231585 5:-55047120 MsaT027962.1:CDS
CCCAATTCTCATTAAGATTT+CGG 0.237239 5:-55047290 MsaT027962.1:CDS
ATGACTTCAGATATTAAGTA+TGG 0.248020 5:-55046895 MsaT027962.1:CDS
TCATCAAACTTTCGCTGAAT+TGG 0.248477 5:+55042404 None:intergenic
AGGTTTGTATTTGTATTATT+AGG 0.264508 5:+55031974 None:intergenic
CGAAAGTTTGATGACTTATA+TGG 0.265767 5:-55042395 MsaT027962.1:CDS
TCGATTTCCGGCGCAGTTCT+TGG 0.268359 5:+55032004 None:intergenic
GCCTTGTTGTCACAGATAAA+AGG 0.270900 5:-55037052 MsaT027962.1:CDS
TCTATCCTGGAGGTTCTTCT+TGG 0.271217 5:-55037638 MsaT027962.1:CDS
GTACAAATCAAACTACATTT+TGG 0.272666 5:-55038808 MsaT027962.1:CDS
AGCCAATGGCCTCAATCTTT+TGG 0.273293 5:-55032872 MsaT027962.1:CDS
TGAGCTAGATGAATTGTTTC+AGG 0.275445 5:-55038406 MsaT027962.1:intron
AGATTTCGGTTGTGCAATAT+TGG 0.277233 5:-55047276 MsaT027962.1:CDS
ACCGAAATCTTAATGAGAAT+TGG 0.278203 5:+55047289 None:intergenic
AACTATTGCAAGACTCGATT+TGG 0.279106 5:-55037605 MsaT027962.1:CDS
CATCAAACTTTCGCTGAATT+GGG 0.294506 5:+55042405 None:intergenic
CAGAAAATGGATTAAATGAT+AGG 0.294703 5:-55040125 MsaT027962.1:CDS
TCATGCCACTGGGGCAAAAT+AGG 0.295882 5:+55043860 None:intergenic
GATAAATCTCTTGATGCTTT+AGG 0.298707 5:-55037133 MsaT027962.1:CDS
CCGAAATCTTAATGAGAATT+GGG 0.300169 5:+55047290 None:intergenic
GCATCTAGTAGTTCAGAAAA+TGG 0.301576 5:-55040138 MsaT027962.1:CDS
TGTGGTGACATAAGTTTAAC+TGG 0.302814 5:-55040186 MsaT027962.1:CDS
CCGGACGAAGGTGATGTTAT+TGG 0.303885 5:+55033437 None:intergenic
GTAAGAAGAGTTGGGATAAC+TGG 0.305160 5:+55042551 None:intergenic
CCCCAGGTTGGAAGTAGTTC+TGG 0.305430 5:-55040703 MsaT027962.1:CDS
GTTCTTAGGGATTTAAATAT+AGG 0.306802 5:-55047360 MsaT027962.1:CDS
AAGCATCGTTGGTGCATTAC+AGG 0.308019 5:-55042431 MsaT027962.1:CDS
ATTGCTTGTGCTTCAGCAGC+TGG 0.314113 5:+55032811 None:intergenic
AGGAAAGTTACGCTACTTAA+AGG 0.317818 5:-55037032 MsaT027962.1:intron
GTCTCAAATATGAAGGACTA+TGG 0.319685 5:-55044102 MsaT027962.1:CDS
CTACTAGATGCAACATTTGA+TGG 0.320383 5:+55040150 None:intergenic
ACTGAATCTCCTATTGCTTC+TGG 0.321966 5:-55043908 MsaT027962.1:CDS
GCCTCCGCTTGAGTGATTAA+TGG 0.326934 5:+55040775 None:intergenic
AACTTACTTTGAAGGCTTGA+TGG 0.328893 5:+55046765 None:intergenic
ATTTGTCTATGCAAGGTCTT+TGG 0.333858 5:-55037239 MsaT027962.1:CDS
ATAATGAAGAATCCAGAAAA+AGG 0.334602 5:-55038135 MsaT027962.1:CDS
AGCTTCCTCACCTTCTATCT+TGG 0.336622 5:+55040527 None:intergenic
AAAGCTGCACGCCGTTGATA+TGG 0.338475 5:+55046347 None:intergenic
GTATGGGTTTAGTAGCTATA+TGG 0.340059 5:-55046878 MsaT027962.1:CDS
TCAAACTTTCAATAACTTCA+TGG 0.340569 5:+55040946 None:intergenic
CGGTCAACCTCAACAAAATA+AGG 0.345778 5:+55047426 None:intergenic
TCTAGATGAATATCAGTATA+AGG 0.345786 5:+55047210 None:intergenic
AATTCTTGGGATTAGGCTTT+CGG 0.348602 5:-55047055 MsaT027962.1:CDS
TGTATGCAGCATTGACGAAT+TGG 0.349845 5:+55035238 None:intergenic
ACAACATGTTGCAGATGAAT+TGG 0.349991 5:-55041066 MsaT027962.1:CDS
CGGAGGACATTCCTTCCCTT+AGG 0.356885 5:-55047035 MsaT027962.1:CDS
AGCAATCATTTATTCATTAG+TGG 0.356952 5:-55032094 MsaT027962.1:CDS
CGTTGATATGGCCTCAGTTC+AGG 0.357500 5:+55046359 None:intergenic
GAAAGCTTAACTTACTTTGA+AGG 0.360202 5:+55046757 None:intergenic
TGTTTCTGGTCTTGTTCATT+TGG 0.367917 5:-55047106 MsaT027962.1:CDS
GTATTTGGAGGCATTCTTGC+TGG 0.371250 5:-55046008 MsaT027962.1:intron
ATTGTATGAGGATATTTATC+AGG 0.375390 5:-55047316 MsaT027962.1:CDS
GATATCCATCAGACATGAAT+TGG 0.377188 5:+55043116 None:intergenic
TGCTCTCATCTTTGCTCACC+GGG 0.382977 5:-55044248 MsaT027962.1:CDS
CATGGAGGGCCATCACAATT+AGG 0.383319 5:+55038438 None:intergenic
AAGACGAATCTTGTGGATAA+AGG 0.383988 5:-55033538 MsaT027962.1:CDS
AAATCCACCGGCACACATAA+TGG 0.386291 5:+55046254 None:intergenic
TGCAATATTGGCAATGATCT+TGG 0.388233 5:-55047264 MsaT027962.1:CDS
ACATGCACGGTGTTATTATC+AGG 0.389376 5:-55047153 MsaT027962.1:CDS
GTGATGGTGGCAGGTCTCTC+AGG 0.393061 5:+55031954 None:intergenic
TTCCCTTAGGGTGAGGGTTG+AGG 0.393152 5:-55047022 MsaT027962.1:CDS
GCAGATGACGGTGGCTATGC+AGG 0.399782 5:-55046826 MsaT027962.1:CDS
CCCAAGAGGAGTGCCTCTCT+TGG 0.407624 5:-55041034 MsaT027962.1:CDS
GTTACATTGAGGGCAATTCT+TGG 0.408048 5:-55047069 MsaT027962.1:CDS
CGGTTTCTCGTTTACACCTA+AGG 0.408121 5:-55037168 MsaT027962.1:CDS
GAATGATGTACTTGATGTAT+TGG 0.408325 5:-55033475 MsaT027962.1:CDS
TGAGGGCAATTCTTGGGATT+AGG 0.408757 5:-55047062 MsaT027962.1:CDS
GCCAAGAGAGGCACTCCTCT+TGG 0.410093 5:+55041033 None:intergenic
TAATAACACCGTGCATGTTT+CGG 0.410236 5:+55047158 None:intergenic
TTGTCATAGGTGACTGCTGC+AGG 0.411199 5:+55040671 None:intergenic
ATTACTGTTGAAGGCTCATA+TGG 0.411304 5:-55035185 MsaT027962.1:CDS
TATATTGAAAGGACTGGATT+TGG 0.411857 5:+55042358 None:intergenic
AAAAGACTGTGAATCTATTC+AGG 0.414421 5:-55032920 MsaT027962.1:CDS
ATACTGGTGGAGGATTTGTT+TGG 0.415870 5:-55042522 MsaT027962.1:CDS
TTCAAGATCGGCATCTATCC+TGG 0.415976 5:-55037651 MsaT027962.1:CDS
TTAAGATAAAATACCTCATA+AGG 0.417530 5:+55042305 None:intergenic
TGCTTTGCTAAAGCTTCGCC+AGG 0.419678 5:-55040737 MsaT027962.1:CDS
TGAGTGCATGAAGAGTTATC+TGG 0.432213 5:+55036148 None:intergenic
TGTGTTGGTTATTCAGCTAA+AGG 0.432917 5:-55044040 MsaT027962.1:CDS
GGCTACTAGCTGATCTAATC+CGG 0.437833 5:+55038563 None:intergenic
AGTGGCATGACGAAATTATA+CGG 0.438759 5:-55043847 MsaT027962.1:intron
TATTTCTGAAGTTGTTCTTA+GGG 0.438922 5:-55047373 MsaT027962.1:CDS
TTGCTCTCATCTTTGCTCAC+CGG 0.439440 5:-55044249 MsaT027962.1:CDS
TTTCAGATATTTGACAGAAC+TGG 0.439804 5:+55040083 None:intergenic
TTTGTTGAGGTTGACCGGTC+TGG 0.440014 5:-55047420 MsaT027962.1:CDS
TATGAAATTTGTTACATTGA+GGG 0.440642 5:-55047079 MsaT027962.1:CDS
AATTCATGTCTGATGGATAT+CGG 0.441234 5:-55043114 MsaT027962.1:CDS
CATGATTCTGATAGACATAT+AGG 0.442069 5:-55043030 MsaT027962.1:CDS
AAAAGCTACGGAAGAAAGTC+AGG 0.444657 5:-55046306 MsaT027962.1:CDS
TTATGGATTTGAATTGTATG+AGG 0.444946 5:-55047328 MsaT027962.1:CDS
ATCAACGGCGTGCAGCTTTG+TGG 0.446900 5:-55046343 MsaT027962.1:CDS
CCAAGAGAGGCACTCCTCTT+GGG 0.447016 5:+55041034 None:intergenic
AAAGGATGTGGAATCCTTGT+TGG 0.448852 5:-55032035 MsaT027962.1:CDS
AACATAGCAAGACTATTACT+TGG 0.449048 5:-55035337 MsaT027962.1:CDS
ACTGCCATCAGTCAATTTAG+AGG 0.451273 5:-55032958 MsaT027962.1:CDS
TTACATTGAGGGCAATTCTT+GGG 0.451756 5:-55047068 MsaT027962.1:CDS
CTCTTCTTACCAGAGTATAC+TGG 0.451983 5:-55042538 MsaT027962.1:CDS
TTGTTTGGATGAGGCTCAAA+TGG 0.452966 5:-55042507 MsaT027962.1:CDS
GATCTTGGTCGATGCAAACT+TGG 0.453725 5:-55047249 MsaT027962.1:CDS
CCAGTGACATAAACTTCTCC+TGG 0.454355 5:+55037074 None:intergenic
GGAGGACATTCCTTCCCTTA+GGG 0.454544 5:-55047034 MsaT027962.1:CDS
AATAAACATGCCGTAGGAGC+TGG 0.455195 5:-55047486 MsaT027962.1:CDS
GTATGCAGCATTGACGAATT+GGG 0.455309 5:+55035239 None:intergenic
CACTGGGGCAAAATAGGAGC+TGG 0.455569 5:+55043866 None:intergenic
TGGTAAAAGTGCTCTTCTAC+TGG 0.456218 5:+55040999 None:intergenic
CATTCCTTCCCTTAGGGTGA+GGG 0.459546 5:-55047028 MsaT027962.1:CDS
ACATTCCTTCCCTTAGGGTG+AGG 0.459624 5:-55047029 MsaT027962.1:CDS
TTGAGGCTTCTAGAAAACCT+TGG 0.460903 5:-55046963 MsaT027962.1:CDS
ACTGAAATCAAAACGAGGAT+TGG 0.466286 5:-55044011 MsaT027962.1:CDS
AGTACTTCCTCCATTGTCAT+AGG 0.466339 5:+55040658 None:intergenic
TGCTACCGCTGCTACTGAAA+TGG 0.467352 5:-55042471 MsaT027962.1:CDS
CTCAAGAATATGTAAATGCT+TGG 0.467900 5:+55037559 None:intergenic
TTAATCACTCAAGCGGAGGC+AGG 0.468366 5:-55040772 MsaT027962.1:CDS
CACAAGCTGCATGTTGCCTC+TGG 0.468948 5:+55040979 None:intergenic
ATAAGCAAGACCAAGATAGA+AGG 0.469263 5:-55040537 MsaT027962.1:CDS
GTTTAGTAGCTATATGGAAA+TGG 0.471798 5:-55046872 MsaT027962.1:CDS
ACATCCTTTAGAGTCAAAAC+AGG 0.472284 5:+55032049 None:intergenic
GTATAATTTCGTCATGCCAC+TGG 0.472323 5:+55043849 None:intergenic
CATCACCTTCGTCCGGATGA+AGG 0.475084 5:-55033430 MsaT027962.1:CDS
GTAACAGATGAGATGGGATT+GGG 0.475157 5:-55044289 MsaT027962.1:intron
TGTAACAGATGAGATGGGAT+TGG 0.477612 5:-55044290 MsaT027962.1:intron
TCAGTATGCTGTCGACATGT+AGG 0.477899 5:+55035305 None:intergenic
CAAACTTTCAATAACTTCAT+GGG 0.482527 5:+55040947 None:intergenic
TATAATTTCGTCATGCCACT+GGG 0.482982 5:+55043850 None:intergenic
AAATGTAGTTTGATTTGTAC+TGG 0.484450 5:+55038811 None:intergenic
CTATATGTCTATCAGAATCA+TGG 0.485844 5:+55043031 None:intergenic
TTTCAATGTAACAGATGAGA+TGG 0.486557 5:-55044296 MsaT027962.1:intron
GAAGCATCCATTACTGTTGA+AGG 0.487642 5:-55035194 MsaT027962.1:CDS
ACTCATACCTAAAACTTATG+AGG 0.487919 5:-55036083 MsaT027962.1:CDS
TATACTCTGGTAAGAAGAGT+TGG 0.487999 5:+55042542 None:intergenic
GTGGAGGATTTGTTTGGATG+AGG 0.488874 5:-55042516 MsaT027962.1:CDS
TCGTCACCTTATGTATTTGG+AGG 0.489251 5:-55046020 MsaT027962.1:CDS
TTTCTCCAATTCATGTCTGA+TGG 0.489319 5:-55043121 MsaT027962.1:CDS
CCAGGAGAAGTTTATGTCAC+TGG 0.490857 5:-55037074 MsaT027962.1:CDS
ATGCTCATTATGTCTTCTCT+CGG 0.491082 5:+55031913 None:intergenic
CTGGTGAAAACGTACCTGAA+TGG 0.492334 5:+55046200 None:intergenic
TAGAAGGTGAGGAAGCTCTC+AGG 0.493930 5:-55040521 MsaT027962.1:CDS
TGTTCGAGGTTCGATCCTGC+TGG 0.496229 5:-55046799 MsaT027962.1:CDS
CTATGCTGTTGATGCACAAA+AGG 0.496469 5:-55035267 MsaT027962.1:CDS
ACATAAGGTGACGAAGTCTC+TGG 0.497538 5:+55046029 None:intergenic
TGGTGAAAACGTACCTGAAT+GGG 0.498890 5:+55046201 None:intergenic
TCTTGGTGCTCTTGCCAACA+AGG 0.499084 5:+55032021 None:intergenic
GTCAAACTCTACGGAAGAGA+AGG 0.499125 5:-55036110 MsaT027962.1:CDS
GTCGATGCAAACTTGGCCAT+TGG 0.499470 5:-55047242 MsaT027962.1:CDS
CCAGATTCTGTCTCTTCGAG+TGG 0.500153 5:-55040808 MsaT027962.1:intron
GCAGCAGTCACCTATGACAA+TGG 0.500860 5:-55040668 MsaT027962.1:CDS
TATACCTGCCTCCCTTCATC+CGG 0.501191 5:+55033418 None:intergenic
AAGATTGAAGAATCCATCTC+AGG 0.502815 5:-55038725 MsaT027962.1:CDS
ATCACCTTCGTCCGGATGAA+GGG 0.503746 5:-55033429 MsaT027962.1:CDS
AAAAGTAAACCTCATCGATC+AGG 0.504080 5:-55047552 MsaT027962.1:CDS
TTACTAAGAAACGGTGAATG+AGG 0.504997 5:+55032752 None:intergenic
GACTCCATTGCAAGCATCGT+TGG 0.505303 5:-55042442 MsaT027962.1:CDS
CTCAGTTCAGGAAGTAACTC+TGG 0.506825 5:+55046371 None:intergenic
CTGACGTATGAAATTCAAAC+CGG 0.506999 5:-55038582 MsaT027962.1:CDS
AGTGCGACATTTGTGATGCT+TGG 0.508817 5:-55044075 MsaT027962.1:CDS
GGTTTCTCGTTTACACCTAA+GGG 0.512025 5:-55037167 MsaT027962.1:CDS
TCTGTATATATTGAAAGGAC+TGG 0.516616 5:+55042352 None:intergenic
AGAATGCCTCCAAATACATA+AGG 0.517395 5:+55046014 None:intergenic
GCTATTGCCGCTGCAAGTGA+TGG 0.517582 5:+55031938 None:intergenic
GTACCTCAACCCTCACCCTA+AGG 0.518395 5:+55047019 None:intergenic
GCATTCTGAAGATTTCCGTC+TGG 0.518593 5:-55040394 MsaT027962.1:CDS
GAACAACTTCAGAAATATCA+AGG 0.519136 5:+55047379 None:intergenic
CGCTTGAGTGATTAATGGAT+CGG 0.520931 5:+55040780 None:intergenic
ATCCAGAACTACTTCCAACC+TGG 0.521008 5:+55040701 None:intergenic
GATAGATACTTACTAAGAAA+CGG 0.522639 5:+55032743 None:intergenic
ATACTCTGGTAAGAAGAGTT+GGG 0.523512 5:+55042543 None:intergenic
GGTATGTCATCTTCAAGCAT+TGG 0.524204 5:+55046392 None:intergenic
CCAAAGGAAAACAATTATCT+GGG 0.524274 5:-55040290 MsaT027962.1:CDS
GTTTCAAAGTTCTTACATGC+AGG 0.524373 5:-55039989 MsaT027962.1:intron
CACTTTCAGATGCTGATCCC+CGG 0.525149 5:+55044230 None:intergenic
AGGGATTTAAATATAGGAGA+AGG 0.527462 5:-55047354 MsaT027962.1:CDS
TTAATCCAACATGGAGCCAA+TGG 0.529280 5:-55032886 MsaT027962.1:CDS
TCATTCTCCATTATGTGTGC+CGG 0.529644 5:-55046261 MsaT027962.1:CDS
AGACCAGAAACACTTTCATC+AGG 0.532173 5:+55047117 None:intergenic
AGCGAAAGTCTCAAATATGA+AGG 0.532815 5:-55044109 MsaT027962.1:CDS
ATATGAGCCTTCAACAGTAA+TGG 0.533337 5:+55035187 None:intergenic
AGAAAATGGATTAAATGATA+GGG 0.533338 5:-55040124 MsaT027962.1:CDS
AGAGTGGCACCAGAAGCAAT+AGG 0.533649 5:+55043899 None:intergenic
GTATGAAATTTGTTACATTG+AGG 0.534815 5:-55047080 MsaT027962.1:CDS
TAGGGAATCTGATGATTTGT+CGG 0.535874 5:-55040106 MsaT027962.1:CDS
CAGTATGCTGTCGACATGTA+GGG 0.538726 5:+55035306 None:intergenic
TTCCAAAAGATTGAGGCCAT+TGG 0.538761 5:+55032870 None:intergenic
CCGCTGCAAGTGATGGTGGC+AGG 0.539321 5:+55031945 None:intergenic
TTCCCCACTCGTCACAGCTA+TGG 0.541658 5:+55043967 None:intergenic
ACATAGCAAGACTATTACTT+GGG 0.542447 5:-55035336 MsaT027962.1:CDS
TTACCAGAGTATACTGGTGG+AGG 0.544020 5:-55042532 MsaT027962.1:CDS
AAGAGCACCAAGAACTGCGC+CGG 0.544610 5:-55032011 MsaT027962.1:CDS
TAACTCCAAGAAGAACCTCC+AGG 0.546173 5:+55037633 None:intergenic
AGAGTTTGTTAAAAGAGCTA+CGG 0.547423 5:-55047190 MsaT027962.1:CDS
TCACCACGCTGAGAAGGATA+AGG 0.548828 5:-55038771 MsaT027962.1:CDS
AGAAATATCAAGGTGTTCAT+CGG 0.549099 5:+55047389 None:intergenic
AGTAAACCTCATCGATCAGG+TGG 0.549601 5:-55047549 MsaT027962.1:CDS
CCAATAACATCACCTTCGTC+CGG 0.550064 5:-55033437 MsaT027962.1:CDS
ATTCTTAATAGAAAAGTCCC+AGG 0.550308 5:-55040915 MsaT027962.1:intron
GATGAAGATATTGAGCGCGT+TGG 0.550908 5:-55038480 MsaT027962.1:CDS
ATCTATTTAGACTTCAAGAT+CGG 0.551022 5:-55037663 MsaT027962.1:intron
TCTCAAATATGAAGGACTAT+GGG 0.552629 5:-55044101 MsaT027962.1:CDS
CGAAATCTTAATGAGAATTG+GGG 0.552977 5:+55047291 None:intergenic
GACGAAGGTGATGTTATTGG+TGG 0.554640 5:+55033440 None:intergenic
AAGTGACTCGCATGCATCGA+AGG 0.554739 5:+55046987 None:intergenic
GCTTTGAACTTGCCATCCAA+AGG 0.556090 5:-55040306 MsaT027962.1:CDS
TGCATGCGAGTCACTTCTTG+AGG 0.556294 5:-55046980 MsaT027962.1:CDS
TGAGGCCATTGGCTCCATGT+TGG 0.556338 5:+55032881 None:intergenic
CACCATCTGTATATATTGAA+AGG 0.556938 5:+55042347 None:intergenic
TTCTCCATTATGTGTGCCGG+TGG 0.558640 5:-55046258 MsaT027962.1:CDS
AAAGCTAGGCCATCAGAGAA+TGG 0.558959 5:-55036038 MsaT027962.1:CDS
ATCAGCCGTGTACATCGAAT+CGG 0.559189 5:-55032790 MsaT027962.1:CDS
GAAGGGAGATATGGGAGCTA+CGG 0.559487 5:-55041135 MsaT027962.1:CDS
TATAATTTCATCTGCTGAGG+AGG 0.560453 5:-55038248 MsaT027962.1:CDS
CAAGCATTTACATATTCTTG+AGG 0.562099 5:-55037558 MsaT027962.1:intron
GGTGATGTTATTGGTGGCAA+AGG 0.563427 5:+55033446 None:intergenic
AAATGCTATGTCAAACTCTA+CGG 0.563543 5:-55036119 MsaT027962.1:CDS
TGACTTCAGATATTAAGTAT+GGG 0.563864 5:-55046894 MsaT027962.1:CDS
TAATCACTCAAGCGGAGGCA+GGG 0.565566 5:-55040771 MsaT027962.1:CDS
CACTGCAGTCATACACGCCC+AGG 0.565725 5:-55043186 MsaT027962.1:intron
TAGAGCCATTTCAGTAGCAG+CGG 0.566170 5:+55042466 None:intergenic
ATCACTTGCAGCGGCAATAG+CGG 0.566423 5:-55031936 MsaT027962.1:CDS
TTCAAAAGAAAAGTTTCGCA+CGG 0.566440 5:-55038216 MsaT027962.1:CDS
ATCAAACTTTCGCTGAATTG+GGG 0.568899 5:+55042406 None:intergenic
ATTTGTGATGCTTGGCAACA+TGG 0.570319 5:-55044067 MsaT027962.1:CDS
AGAGAGGCACTCCTCTTGGG+AGG 0.570570 5:+55041037 None:intergenic
CCCACTCGTCACAGCTATGG+TGG 0.570647 5:+55043970 None:intergenic
GAGCGTGTGGAGTGCATATG+TGG 0.570869 5:-55044139 MsaT027962.1:CDS
CCAATTTGTCAAGAAAAGCT+AGG 0.571826 5:-55036052 MsaT027962.1:CDS
TCGTCCGGATGAAGGGAGGC+AGG 0.573070 5:-55033422 MsaT027962.1:intron
TCCAGAACTACTTCCAACCT+GGG 0.575953 5:+55040702 None:intergenic
ACTGGGGCAAAATAGGAGCT+GGG 0.576187 5:+55043867 None:intergenic
TACTAAGAAACGGTGAATGA+GGG 0.578198 5:+55032753 None:intergenic
AGTTGATTTGCAGACAGACA+TGG 0.578769 5:-55046848 MsaT027962.1:CDS
GTCCTTTCAATATATACAGA+TGG 0.579070 5:-55042349 MsaT027962.1:CDS
TGCACCAACGATGCTTGCAA+TGG 0.579375 5:+55042438 None:intergenic
CAAGACCAAGATAGAAGGTG+AGG 0.579514 5:-55040532 MsaT027962.1:CDS
TCAGCAGCTGGATTGAGTAA+TGG 0.580331 5:+55032823 None:intergenic
GATTCAGTGCCCCAAGTCAA+CGG 0.580750 5:-55044196 MsaT027962.1:CDS
TTGAGGTTGACCGGTCTGGT+TGG 0.583431 5:-55047416 MsaT027962.1:CDS
TGCTCATGATGAAATAAAGA+TGG 0.586589 5:-55037191 MsaT027962.1:CDS
CAATTTAGAGGAATACAGAA+TGG 0.587353 5:-55032946 MsaT027962.1:CDS
GAATGTTGGGCAGAAAGTTG+TGG 0.588246 5:-55038113 MsaT027962.1:intron
AGCATCGTTGGTGCATTACA+GGG 0.588504 5:-55042430 MsaT027962.1:CDS
GCTAGTAGCCTCAAGGAAAG+TGG 0.588796 5:-55038550 MsaT027962.1:CDS
AATCGTCGAGATTAGCTGCT+CGG 0.589433 5:-55038694 MsaT027962.1:intron
TAAGAAGAGTTGGGATAACT+GGG 0.589439 5:+55042552 None:intergenic
AATTGTCAACCTAATTGTGA+TGG 0.589620 5:-55038447 MsaT027962.1:CDS
GAGTTATCTGGACTTTCCGA+TGG 0.589972 5:+55036160 None:intergenic
AGCACTTCACCACGCTGAGA+AGG 0.591423 5:-55038777 MsaT027962.1:CDS
ATTGAAACACCATTCTCTGA+TGG 0.592513 5:+55036029 None:intergenic
TCAAACTCTACGGAAGAGAA+GGG 0.593397 5:-55036109 MsaT027962.1:CDS
TTCAATGTAACAGATGAGAT+GGG 0.593691 5:-55044295 MsaT027962.1:intron
TAAATGCTTGGTCGCTGCTG+AGG 0.594626 5:+55037571 None:intergenic
AGTTAATACAATGTCCGCAC+TGG 0.596456 5:+55043083 None:intergenic
TACCTCAACCCTCACCCTAA+GGG 0.596468 5:+55047020 None:intergenic
AGAGAATGGTGTTTCAATGT+GGG 0.596936 5:-55036024 MsaT027962.1:CDS
TGGCAACATGGAGATTGTGT+TGG 0.597272 5:-55044055 MsaT027962.1:CDS
ACGGCGTGCAGCTTTGTGGA+TGG 0.597696 5:-55046339 MsaT027962.1:CDS
GCCTCCCTTCATCCGGACGA+AGG 0.598716 5:+55033425 None:intergenic
TTGCAAGACTCGATTTGGAA+AGG 0.599009 5:-55037600 MsaT027962.1:CDS
CCACCATAGCTGTGACGAGT+GGG 0.600231 5:-55043970 MsaT027962.1:CDS
CAGATGACGGTGGCTATGCA+GGG 0.602369 5:-55046825 MsaT027962.1:CDS
TATTCCTCTAAATTGACTGA+TGG 0.603002 5:+55032954 None:intergenic
CTTTCAATATATACAGATGG+TGG 0.605039 5:-55042346 MsaT027962.1:CDS
CAGAGAATGGTGTTTCAATG+TGG 0.607195 5:-55036025 MsaT027962.1:CDS
TTGATAATGATCAAGTGAAG+AGG 0.608869 5:-55040224 MsaT027962.1:CDS
AAACATGCCGTAGGAGCTGG+AGG 0.609048 5:-55047483 MsaT027962.1:CDS
GTGGTGACATAAGTTTAACT+GGG 0.609674 5:-55040185 MsaT027962.1:CDS
CATCGGACAACCAACCAGAC+CGG 0.609736 5:+55047406 None:intergenic
TTTGTTCTCAAGAACGAACG+TGG 0.609869 5:-55038274 MsaT027962.1:CDS
CAGTCACAAGACGAATCTTG+TGG 0.611163 5:-55033545 MsaT027962.1:CDS
GAAAGGAATTTGTCTATGCA+AGG 0.611654 5:-55037246 MsaT027962.1:CDS
CGATCCATTAATCACTCAAG+CGG 0.611996 5:-55040779 MsaT027962.1:CDS
CTGAACTGAGGCCATATCAA+CGG 0.612646 5:-55046358 MsaT027962.1:CDS
TTCTTACCAGAGTATACTGG+TGG 0.614375 5:-55042535 MsaT027962.1:CDS
ATCTAATACCACTTTCCTTG+AGG 0.615046 5:+55038542 None:intergenic
GTATGATGAATGTTATGTCT+TGG 0.615058 5:-55046933 MsaT027962.1:CDS
AATCCTCCACCAGTATACTC+TGG 0.616662 5:+55042529 None:intergenic
TTTGGATGAGGCTCAAATGG+TGG 0.616984 5:-55042504 MsaT027962.1:CDS
TCTTGGGATTAGGCTTTCGG+AGG 0.617561 5:-55047052 MsaT027962.1:CDS
ATTGCCGCTGCAAGTGATGG+TGG 0.617570 5:+55031941 None:intergenic
TCCATTAATCACTCAAGCGG+AGG 0.619058 5:-55040776 MsaT027962.1:CDS
CCTGCCACCATCACTTGCAG+CGG 0.620757 5:-55031945 MsaT027962.1:CDS
GCTATGCAGGGAAATGTTCG+AGG 0.622314 5:-55046813 MsaT027962.1:CDS
TCTAGCTCACACAGAACACA+TGG 0.622488 5:+55038420 None:intergenic
CGGCAAGATTGTGATGAATG+TGG 0.624114 5:+55040355 None:intergenic
CAGTGACATAAACTTCTCCT+GGG 0.624621 5:+55037075 None:intergenic
GAGAGGCACTCCTCTTGGGA+GGG 0.625631 5:+55041038 None:intergenic
TAGATCAGCTAGTAGCCTCA+AGG 0.625761 5:-55038557 MsaT027962.1:CDS
TTTGACCGATTCGATGTACA+CGG 0.628354 5:+55032785 None:intergenic
AGATATAATTTCATCTGCTG+AGG 0.630053 5:-55038251 MsaT027962.1:CDS
GACAATGGAGGAAGTACTGA+CGG 0.630688 5:-55040653 MsaT027962.1:intron
TGACGAAGTCTCTGGACACA+AGG 0.632849 5:+55046037 None:intergenic
ACTTTGTAAGGGAATGCGAA+AGG 0.634733 5:-55037263 MsaT027962.1:intron
AGTAATTCGAGATCCTTATG+AGG 0.635191 5:-55042318 MsaT027962.1:intron
GTGATAGTGTAAGCCAAGAG+AGG 0.636887 5:+55041021 None:intergenic
TATAAGGTAACACTGGCCAA+TGG 0.639733 5:+55047226 None:intergenic
CAGACAGACATGGCAGATGA+CGG 0.642499 5:-55046838 MsaT027962.1:CDS
ACCTTCGTCCGGATGAAGGG+AGG 0.642580 5:-55033426 MsaT027962.1:CDS
AGTGGTAACAACTAATGGGT+AGG 0.644264 5:-55047578 None:intergenic
TCAACCCTCACCCTAAGGGA+AGG 0.646360 5:+55047024 None:intergenic
AGGCATAAAATCAGTAACTG+TGG 0.649380 5:-55040204 MsaT027962.1:CDS
GGCTAGCTCAAACTTTACCC+AGG 0.650781 5:-55037092 MsaT027962.1:CDS
CCAGAACTACTTCCAACCTG+GGG 0.651744 5:+55040703 None:intergenic
GCTCTCATCTTTGCTCACCG+GGG 0.651974 5:-55044247 MsaT027962.1:CDS
TGTCATAGGTGACTGCTGCA+GGG 0.653063 5:+55040672 None:intergenic
ATATCAGTATAAGGTAACAC+TGG 0.653241 5:+55047219 None:intergenic
AGCTGGGCAGACAATGAGAG+TGG 0.655013 5:+55043883 None:intergenic
ATTGGAATTGCCCTCCCAAG+AGG 0.655345 5:-55041048 MsaT027962.1:CDS
TGACAGTACCGAAACATGCA+CGG 0.655994 5:-55047166 MsaT027962.1:CDS
AGGTGAGAATGAATTATATG+CGG 0.657815 5:-55037113 MsaT027962.1:CDS
AAGGTGAGGAAGCTCTCAGG+AGG 0.659473 5:-55040518 MsaT027962.1:CDS
GAATTGAATAAACATGCCGT+AGG 0.661956 5:-55047492 MsaT027962.1:CDS
TTGAGTGATTAATGGATCGG+AGG 0.662232 5:+55040783 None:intergenic
TATCGGTGATCTTGCCAGTG+CGG 0.664641 5:-55043097 MsaT027962.1:CDS
GCTGTGCTTCCAAAAGATTG+AGG 0.665648 5:+55032863 None:intergenic
ACCACCATAGCTGTGACGAG+TGG 0.669856 5:-55043971 MsaT027962.1:CDS
TATTTAACAATGGATCCAGA+CGG 0.673379 5:+55040379 None:intergenic
CACCATAGCTGTGACGAGTG+GGG 0.675317 5:-55043969 MsaT027962.1:CDS
TGAAGGCTCATATGGAACCA+AGG 0.678521 5:-55035177 MsaT027962.1:intron
GTTAGAAATAGATCAGACGA+TGG 0.680565 5:-55038514 MsaT027962.1:CDS
CTTGTGTCCAGAAAATCCAC+CGG 0.683194 5:+55046242 None:intergenic
GCAGTCACCTATGACAATGG+AGG 0.684434 5:-55040665 MsaT027962.1:CDS
ATTATCCCACCTGATCGATG+AGG 0.686590 5:+55047543 None:intergenic
AGCTCACACAGAACACATGG+AGG 0.689659 5:+55038423 None:intergenic
CAGAGTTACTTCCTGAACTG+AGG 0.690628 5:-55046370 MsaT027962.1:CDS
GCTCACACAGAACACATGGA+GGG 0.694605 5:+55038424 None:intergenic
TGAATGTGGATATTTAACAA+TGG 0.700393 5:+55040369 None:intergenic
TCATGATGAAATAAAGATGG+CGG 0.708492 5:-55037188 MsaT027962.1:CDS
GTAAACCTCATCGATCAGGT+GGG 0.713953 5:-55047548 MsaT027962.1:CDS
AATCCTTATCCTTCTCAGCG+TGG 0.719017 5:+55038768 None:intergenic
ACAGACATGGCAGATGACGG+TGG 0.722533 5:-55046835 MsaT027962.1:CDS
AAGATCGGCATCTATCCTGG+AGG 0.727756 5:-55037648 MsaT027962.1:CDS
CAGAACTACTTCCAACCTGG+GGG 0.734784 5:+55040704 None:intergenic
AAATCACTGAAATCAAAACG+AGG 0.750256 5:-55044016 MsaT027962.1:CDS
ATAATTTCGTCATGCCACTG+GGG 0.755274 5:+55043851 None:intergenic
TGGTGACATAAGTTTAACTG+GGG 0.798157 5:-55040184 MsaT027962.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 55031904 55047586 55031904 ID=MsaG027962
Chr5 mRNA 55031904 55047586 55031904 ID=MsaT027962.1;Parent=MsaG027962
Chr5 exon 55031904 55032164 55031904 ID=MsaT027962.1.exon19;Parent=MsaT027962.1
Chr5 CDS 55031904 55032164 55031904 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55032756 55032990 55032756 ID=MsaT027962.1.exon18;Parent=MsaT027962.1
Chr5 CDS 55032756 55032990 55032756 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55033423 55033574 55033423 ID=MsaT027962.1.exon17;Parent=MsaT027962.1
Chr5 CDS 55033423 55033574 55033423 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55035178 55035389 55035178 ID=MsaT027962.1.exon16;Parent=MsaT027962.1
Chr5 CDS 55035178 55035389 55035178 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55036005 55036209 55036005 ID=MsaT027962.1.exon15;Parent=MsaT027962.1
Chr5 CDS 55036005 55036209 55036005 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55037033 55037275 55037033 ID=MsaT027962.1.exon14;Parent=MsaT027962.1
Chr5 CDS 55037033 55037275 55037033 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55037559 55037675 55037559 ID=MsaT027962.1.exon13;Parent=MsaT027962.1
Chr5 CDS 55037559 55037675 55037559 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55038114 55038314 55038114 ID=MsaT027962.1.exon12;Parent=MsaT027962.1
Chr5 CDS 55038114 55038314 55038114 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55038407 55038623 55038407 ID=MsaT027962.1.exon11;Parent=MsaT027962.1
Chr5 CDS 55038407 55038623 55038407 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55038695 55038855 55038695 ID=MsaT027962.1.exon10;Parent=MsaT027962.1
Chr5 CDS 55038695 55038855 55038695 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55039990 55040565 55039990 ID=MsaT027962.1.exon9;Parent=MsaT027962.1
Chr5 CDS 55039990 55040565 55039990 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55040654 55040826 55040654 ID=MsaT027962.1.exon8;Parent=MsaT027962.1
Chr5 CDS 55040654 55040826 55040654 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55040916 55041156 55040916 ID=MsaT027962.1.exon7;Parent=MsaT027962.1
Chr5 CDS 55040916 55041156 55040916 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55042319 55042577 55042319 ID=MsaT027962.1.exon6;Parent=MsaT027962.1
Chr5 CDS 55042319 55042577 55042319 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55043000 55043200 55043000 ID=MsaT027962.1.exon5;Parent=MsaT027962.1
Chr5 CDS 55043000 55043200 55043000 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55043848 55044304 55043848 ID=MsaT027962.1.exon4;Parent=MsaT027962.1
Chr5 CDS 55043848 55044304 55043848 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55046009 55046070 55046009 ID=MsaT027962.1.exon3;Parent=MsaT027962.1
Chr5 CDS 55046009 55046070 55046009 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55046215 55046421 55046215 ID=MsaT027962.1.exon2;Parent=MsaT027962.1
Chr5 CDS 55046215 55046421 55046215 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Chr5 exon 55046772 55047586 55046772 ID=MsaT027962.1.exon1;Parent=MsaT027962.1
Chr5 CDS 55046772 55047586 55046772 ID=cds.MsaT027962.1;Parent=MsaT027962.1
Gene Sequence

>MsaT027962.1

ATGGGTAGGCGAAAAAGTAAACCTCATCGATCAGGTGGGATAATAGTAGAAACAAATGCTAGTGCTGAAACAGAATTGAATAAACATGCCGTAGGAGCTGGAGGAAAAGAAAATAATGATTTTGGTGATATTTATAAACCTTATTTTGTTGAGGTTGACCGGTCTGGTTGGTTGTCCGATGAACACCTTGATATTTCTGAAGTTGTTCTTAGGGATTTAAATATAGGAGAAGGCTTTTATGGATTTGAATTGTATGAGGATATTTATCAGGATCCCCAATTCTCATTAAGATTTCGGTTGTGCAATATTGGCAATGATCTTGGTCGATGCAAACTTGGCCATTGGCCAGTGTTACCTTATACTGATATTCATCTAGAGTTTGTTAAAAGAGCTACGGTTGACAGTACCGAAACATGCACGGTGTTATTATCAGGTATTTTTGATGGACCTGATGAAAGTGTTTCTGGTCTTGTTCATTTGGCGAGTATGAAATTTGTTACATTGAGGGCAATTCTTGGGATTAGGCTTTCGGAGGACATTCCTTCCCTTAGGGTGAGGGTTGAGGTACTAAAGAGTGCCTTCGATGCATGCGAGTCACTTCTTGAGGCTTCTAGAAAACCTTGGAAAAAGAGTATGATGAATGTTATGTCTTGGTTACGACCAGAAATAATGACTTCAGATATTAAGTATGGGTTTAGTAGCTATATGGAAATGGAAGTTGATTTGCAGACAGACATGGCAGATGACGGTGGCTATGCAGGGAAATGTTCGAGGTTCGATCCTGCTGGTTTTTATGAAGCCATCAAGCCTTCAAAAACAGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTGAACTGAGGCCATATCAACGGCGTGCAGCTTTGTGGATGGTAAAACGAGAAAAAGCTACGGAAGAAAGTCAGGCTGAAATAGAAAGAAATCAGTTTCATTCTCCATTATGTGTGCCGGTGGATTTTCTGGACACAAGGTCTAAAATGTTTTTCAACCCATTCAGTGGAAATATTTCCTTGTGTCCAGAGACTTCGTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGATTGGGAAAAACTGTAGAATTGCTTGCTCTCATCTTTGCTCACCGGGGATCAGCATCTGAAAGTGACATACTAATTGATTCAGTGCCCCAAGTCAACGGCGACGAAAAAGTCGCTTTAAAAAGACTCAAAAAAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTCAAATATGAAGGACTATGGGTTCAGTGCGACATTTGTGATGCTTGGCAACATGGAGATTGTGTTGGTTATTCAGCTAAAGGAAAATCACTGAAATCAAAACGAGGATTGGAAAGCAAGACATCTAAAACCACCATAGCTGTGACGAGTGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCTATTGCTTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGACGAAATTATACGTCATACACGCCCAGGAGCCTTGAAAACTTTTATTTATGAAGGTGTGCGTGACACATCTTTCTCCAATTCATGTCTGATGGATATCGGTGATCTTGCCAGTGCGGACATTGTATTAACTACATATGATGTGCTTAAAGATGATTTGTTCCATGATTCTGATAGACATATAGGTGATCGACACCTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAGTATACTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAGAGTACTGTTGCTACCGCTGCTACTGAAATGGCTCTAAGACTCCATTGCAAGCATCGTTGGTGCATTACAGGGACCCCAATTCAGCGAAAGTTTGATGACTTATATGGACTTTTAAGGTTCACCAAATCCAGTCCTTTCAATATATACAGATGGTGGAGTGAAGTAATTCGAGATCCTTATGAGAAGGGAGATATGGGAGCTACGGAATTTACACACAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACATGTTGCAGATGAATTGGAATTGCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGCAGCTTGTGTTAGAGACTCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTTCGAGTGGTTCCTCCGATCCATTAATCACTCAAGCGGAGGCAGGGAAGCTATTGCATGCTTTGCTAAAGCTTCGCCAGGCTTGTTGTCACCCCCAGGTTGGAAGTAGTTCTGGATTGCGTTCCCTGCAGCAGTCACCTATGACAATGGAGGAAGTACTGACGGTCCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTATTGCTCTGAATGCTCTTGCAGCAATAGTTACAATACAAAACGATTTTTCTCAAGCTGCTTCGCTGTACAATGAATCTCTTACTTTAGCTGAAGAGCATTCTGAAGATTTCCGTCTGGATCCATTGTTAAATATCCACATTCATCACAATCTTGCCGAAATATTCCCCCTGGCTGAAAATTTTGCTTTGAACTTGCCATCCAAAGGAAAACAATTATCTGGGACTTCCGCAGTTAATACAGCCAAAAAGCATTATATTGTAAAGGTTGATAATGATCAAGTGAAGAGGCATAAAATCAGTAACTGTGGTGACATAAGTTTAACTGGGGCTGCTTCAGATCCATCAAATGTTGCATCTAGTAGTTCAGAAAATGGATTAAATGATAGGGAATCTGATGATTTGTCGGCCAGTTCTGTCAAATATCTGAAAGCACAATGTGAAGATTCAAAACATAAATACTTATCTGTTTTCAGTTCAAAGCTAGTTGCAGCTCAGCAAGAGTTTCAAAGTTCTTACATGCAGGTTTGTAATGCATATCACGACACCAGTACAAATCAAACTACATTTTGGTGGTTAGAAGCACTTCACCACGCTGAGAAGGATAAGGATTTCTCAACTGAGTTGATTAGAAAGATTGAAGAATCCATCTCAGGAAATTCAAAATCGTCGAGATTAGCTGCTCGTTTTCGGAGCATAAGCTCTCTGACGTATGAAATTCAAACCGGATTAGATCAGCTAGTAGCCTCAAGGAAAGTGGTATTAGATCGTCTGTTAGAAATAGATCAGACGATGGAAAACCCAAAAGATGAAGATATTGAGCGCGTTGGTAAATGTCGAAATTGTCAACCTAATTGTGATGGCCCTCCATGTGTTCTGTGTGAGCTAGATGAATTGTTTCAGCATTACGAAGCTAGACTCTTTGTTCTCAAGAACGAACGTGGAGATATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAAAAGAAAAGTTTCGCACGGAATCATTTCCTGTCAAACCTATCAAAATCTAATCAAAGTTCATCAGTATCTAATATTGATAATGAAGAATCCAGAAAAAGGAATGTTGGGCAGAAAGTTGTGACTTCAAGATCGGCATCTATCCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGCAAGACTCGATTTGGAAAGGACAGTGCCTCAGCAGCGACCAAGCATTTACATATTCTTGAGGGAATGCGAAAGGAATTTGTCTATGCAAGGTCTTTGGCATCAGCTCAAGCTCAATATCTGCGTGCTCATGATGAAATAAAGATGGCGGTTTCTCGTTTACACCTAAGGGAAAATGAAGACGATAAATCTCTTGATGCTTTAGGTGAGAATGAATTATATGCGGCTAGCTCAAACTTTACCCAGGAGAAGTTTATGTCACTGGCCTTGTTGTCACAGATAAAAGGAAAGTTACGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATCGGAAAGTCCAGATAACTCTTCATGCACTCAAGATACAAATGCTATGTCAAACTCTACGGAAGAGAAGGGTGAACTCATACCTAAAACTTATGAGGAATCATGCCCAATTTGTCAAGAAAAGCTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCATGTTACTTGCTGTAGATGTTTATTAGCTATGACTGAGAAAAGACTTAAACATAGCAAGACTATTACTTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTCGAAACATTGCCTATGCTGTTGATGCACAAAAGGAATCTCCCAATTCGTCAATGCTGCATACAATTGACAATTGTGAAAAACACGAAGCATCCATTACTGTTGAAGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGACGAATCTTGTGGATAAAGGCTACAAATCATAACTCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCCACCAATAACATCACCTTCGTCCGGATGAAGGGAGGCAGGAAAGCACACACTGCCATCAGTCAATTTAGAGGAATACAGAATGGCACAAAAGACTGTGAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGCCGTGTACATCGAATCGGTCAAAAACAGAAGACCCTCATTCACCGTTTCTTAGTAAAAGACACAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGAAGCAATCATTTATTCATTAGTGGCAACACAAAAAATCAAGATCAACCTGTTTTGACTCTAAAGGATGTGGAATCCTTGTTGGCAAGAGCACCAAGAACTGCGCCGGAAATCGATGAAAATCCTAATAATACAAATACAAACCTGAGAGACCTGCCACCATCACTTGCAGCGGCAATAGCGGCCGAGAGAAGACATAATGAGCATAGAACATGA
Protein sequence

>MsaT027962.1

MGRRKSKPHRSGGIIVETNASAETELNKHAVGAGGKENNDFGDIYKPYFVEVDRSGWLSDEHLDISEVVLRDLNIGEGFYGFELYEDIYQDPQFSLRFRLCNIGNDLGRCKLGHWPVLPYTDIHLEFVKRATVDSTETCTVLLSGIFDGPDESVSGLVHLASMKFVTLRAILGIRLSEDIPSLRVRVEVLKSAFDACESLLEASRKPWKKSMMNVMSWLRPEIMTSDIKYGFSSYMEMEVDLQTDMADDGGYAGKCSRFDPAGFYEAIKPSKTEPMLEDDIPELLPELRPYQRRAALWMVKREKATEESQAEIERNQFHSPLCVPVDFLDTRSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLALIFAHRGSASESDILIDSVPQVNGDEKVALKRLKKERVECICGAVSESLKYEGLWVQCDICDAWQHGDCVGYSAKGKSLKSKRGLESKTSKTTIAVTSGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTFIYEGVRDTSFSNSCLMDIGDLASADIVLTTYDVLKDDLFHDSDRHIGDRHLLRFQKRYPVIPTLLTRVYWWRICLDEAQMVESTVATAATEMALRLHCKHRWCITGTPIQRKFDDLYGLLRFTKSSPFNIYRWWSEVIRDPYEKGDMGATEFTHRVFKQIMWRSSKQHVADELELPSQEECLSWLTLSPVEEHFYQRQHAACVRDSHEVIESLRNDILNRKVPDSVSSSGSSDPLITQAEAGKLLHALLKLRQACCHPQVGSSSGLRSLQQSPMTMEEVLTVLISKTKIEGEEALRRLVIALNALAAIVTIQNDFSQAASLYNESLTLAEEHSEDFRLDPLLNIHIHHNLAEIFPLAENFALNLPSKGKQLSGTSAVNTAKKHYIVKVDNDQVKRHKISNCGDISLTGAASDPSNVASSSSENGLNDRESDDLSASSVKYLKAQCEDSKHKYLSVFSSKLVAAQQEFQSSYMQVCNAYHDTSTNQTTFWWLEALHHAEKDKDFSTELIRKIEESISGNSKSSRLAARFRSISSLTYEIQTGLDQLVASRKVVLDRLLEIDQTMENPKDEDIERVGKCRNCQPNCDGPPCVLCELDELFQHYEARLFVLKNERGDIISSAEEAVDFQKKSFARNHFLSNLSKSNQSSSVSNIDNEESRKRNVGQKVVTSRSASILEVLLGVIKNYCKTRFGKDSASAATKHLHILEGMRKEFVYARSLASAQAQYLRAHDEIKMAVSRLHLRENEDDKSLDALGENELYAASSNFTQEKFMSLALLSQIKGKLRYLKGLVQSKQKLPSESPDNSSCTQDTNAMSNSTEEKGELIPKTYEESCPICQEKLGHQRMVFQCGHVTCCRCLLAMTEKRLKHSKTITWVMCPTCRQHTDFRNIAYAVDAQKESPNSSMLHTIDNCEKHEASITVEGSYGTKIEAVTRRILWIKATNHNSKVLVFSSWNDVLDVLEHAFATNNITFVRMKGGRKAHTAISQFRGIQNGTKDCESIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKQKTLIHRFLVKDTVEESIYKLNRSRSNHLFISGNTKNQDQPVLTLKDVESLLARAPRTAPEIDENPNNTNTNLRDLPPSLAAAIAAERRHNEHRT*