AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG027977

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027977 MtrunA17_Chr5g0428541 75.817 153 36 1 30 181 440 592 3.18e-75 236
MsaG027977 MtrunA17_Chr3g0128551 66.883 154 47 4 30 182 470 620 4.10e-61 200
MsaG027977 MtrunA17_Chr3g0108301 59.732 149 58 2 30 178 482 628 4.80e-51 173
MsaG027977 MtrunA17_Chr5g0432851 62.416 149 54 2 30 178 483 629 3.34e-50 171
MsaG027977 MtrunA17_Chr7g0245171 56.757 148 60 4 30 176 462 606 9.19e-47 161
MsaG027977 MtrunA17_Chr8g0393211 50.649 154 74 2 30 183 501 652 7.35e-45 157
MsaG027977 MtrunA17_Chr5g0396941 49.333 150 73 3 30 178 427 574 1.76e-42 150
MsaG027977 MtrunA17_Chr3g0126281 53.147 143 64 3 30 171 182 322 3.40e-42 144
MsaG027977 MtrunA17_Chr6g0478621 48.701 154 77 2 30 183 504 655 8.86e-42 148
MsaG027977 MtrunA17_Chr4g0062911 51.333 150 70 3 30 178 472 619 1.52e-40 145
MsaG027977 MtrunA17_Chr5g0434551 45.806 155 82 2 30 184 466 618 2.25e-39 141
MsaG027977 MtrunA17_Chr1g0209521 48.466 163 75 4 21 176 477 637 2.75e-39 141
MsaG027977 MtrunA17_Chr8g0387791 49.333 150 73 3 30 178 450 597 6.08e-39 140
MsaG027977 MtrunA17_Chr3g0126271 50.658 152 71 4 30 180 448 596 7.01e-39 140
MsaG027977 MtrunA17_Chr1g0159161 52.349 149 66 4 30 178 415 558 9.59e-39 139
MsaG027977 MtrunA17_Chr5g0423121 47.619 147 74 2 30 176 464 607 1.76e-35 130
MsaG027977 MtrunA17_Chr7g0265601 42.012 169 83 5 30 185 504 670 3.06e-35 130
MsaG027977 MtrunA17_Chr4g0037561 43.243 148 77 3 30 173 493 637 1.36e-28 111
MsaG027977 MtrunA17_Chr1g0179521 41.139 158 82 5 30 185 491 639 3.74e-26 104
MsaG027977 MtrunA17_Chr5g0445251 39.310 145 74 4 30 173 53 184 1.40e-24 95.9
MsaG027977 MtrunA17_Chr5g0437741 34.392 189 103 6 9 181 587 770 1.26e-23 97.4
MsaG027977 MtrunA17_Chr7g0237801 33.793 145 93 3 43 186 526 668 8.38e-23 95.1
MsaG027977 MtrunA17_Chr4g0005201 38.365 159 86 5 30 181 625 778 9.18e-23 94.7
MsaG027977 MtrunA17_Chr7g0237821 38.065 155 85 4 32 180 928 1077 2.51e-20 87.8
MsaG027977 MtrunA17_Chr2g0288391 36.076 158 83 4 30 186 475 615 8.68e-20 86.3
MsaG027977 MtrunA17_Chr2g0279071 33.333 156 101 3 30 184 260 413 4.14e-19 84.0
MsaG027977 MtrunA17_Chr5g0419721 36.970 165 90 5 32 190 776 932 7.93e-19 83.6
MsaG027977 MtrunA17_Chr4g0053221 37.671 146 73 4 30 173 487 616 9.54e-18 80.5
MsaG027977 MtrunA17_Chr8g0388991 35.762 151 93 3 30 178 470 618 2.16e-17 79.3
MsaG027977 MtrunA17_Chr3g0117921 35.294 153 77 6 26 169 485 624 3.63e-17 78.6
MsaG027977 MtrunA17_Chr7g0244931 38.065 155 86 5 30 178 793 943 5.06e-17 78.2
MsaG027977 MtrunA17_Chr6g0478181 33.121 157 94 5 30 178 394 547 1.29e-16 77.0
MsaG027977 MtrunA17_Chr2g0312651 34.000 150 90 4 32 175 938 1084 2.98e-16 76.3
MsaG027977 MtrunA17_Chr4g0018701 32.258 155 98 5 32 182 852 1003 3.10e-16 76.3
MsaG027977 MtrunA17_Chr1g0147701 30.189 159 107 3 32 188 470 626 3.67e-16 75.9
MsaG027977 MtrunA17_Chr8g0376301 44.944 89 45 2 82 170 289 373 3.97e-16 75.5
MsaG027977 MtrunA17_Chr7g0262141 32.692 156 96 6 32 182 843 994 6.97e-16 75.1
MsaG027977 MtrunA17_Chr1g0183231 32.258 155 97 5 32 182 834 984 7.65e-16 75.1
MsaG027977 MtrunA17_Chr4g0012841 34.337 166 96 5 22 178 694 855 7.85e-16 74.7
MsaG027977 MtrunA17_Chr7g0221191 32.653 147 91 3 32 171 521 666 8.49e-16 74.7
MsaG027977 MtrunA17_Chr1g0201241 33.333 162 98 6 27 179 845 1005 1.65e-15 73.9
MsaG027977 MtrunA17_Chr1g0190411 31.613 155 99 5 32 182 840 991 3.01e-15 73.2
MsaG027977 MtrunA17_Chr2g0334251 32.000 150 96 4 32 178 507 653 3.77e-15 72.8
MsaG027977 MtrunA17_Chr4g0017251 31.410 156 99 5 32 183 805 956 4.18e-15 72.8
MsaG027977 MtrunA17_Chr2g0313911 33.553 152 92 4 32 178 200 347 4.63e-15 72.0
MsaG027977 MtrunA17_Chr7g0231541 31.469 143 87 3 35 173 578 713 4.93e-15 72.4
MsaG027977 MtrunA17_Chr6g0488771 35.484 155 85 6 32 178 262 409 5.38e-15 72.0
MsaG027977 MtrunA17_Chr7g0232131 31.469 143 87 3 35 173 1045 1180 5.44e-15 72.4
MsaG027977 MtrunA17_Chr1g0189871 34.395 157 92 5 32 180 930 1083 6.53e-15 72.4
MsaG027977 MtrunA17_Chr3g0128731 36.601 153 87 5 30 176 826 974 7.36e-15 72.0
MsaG027977 MtrunA17_Chr4g0058761 32.075 159 97 4 27 176 894 1050 7.54e-15 72.0
MsaG027977 MtrunA17_Chr5g0442151 31.677 161 94 7 32 181 809 964 8.63e-15 72.0
MsaG027977 MtrunA17_Chr2g0301061 28.571 147 103 2 30 175 49 194 1.08e-14 69.3
MsaG027977 MtrunA17_Chr0c01g0489481 32.653 147 90 4 32 171 457 601 1.51e-14 71.2
MsaG027977 MtrunA17_Chr3g0140861 31.515 165 85 7 32 180 788 940 1.87e-14 70.9
MsaG027977 MtrunA17_Chr3g0079661 31.126 151 96 3 32 176 1043 1191 2.79e-14 70.5
MsaG027977 MtrunA17_Chr5g0409041 30.719 153 81 4 32 171 431 571 3.61e-14 70.1
MsaG027977 MtrunA17_Chr3g0129391 31.126 151 95 4 32 176 1003 1150 4.62e-14 69.7
MsaG027977 MtrunA17_Chr3g0134221 33.987 153 80 5 30 178 515 650 4.81e-14 69.7
MsaG027977 MtrunA17_Chr7g0222321 30.769 156 99 3 30 179 856 1008 7.09e-14 69.3
MsaG027977 MtrunA17_Chr8g0344471 33.108 148 96 3 30 176 525 670 8.68e-14 68.9
MsaG027977 MtrunA17_Chr5g0398441 28.947 152 99 3 30 176 738 885 9.81e-14 68.9
MsaG027977 MtrunA17_Chr2g0324931 30.519 154 93 4 32 177 820 967 9.97e-14 68.9
MsaG027977 MtrunA17_Chr4g0070291 27.703 148 105 2 30 176 479 625 1.16e-13 68.6
MsaG027977 MtrunA17_Chr3g0140551 33.557 149 83 7 32 171 841 982 1.17e-13 68.6
MsaG027977 MtrunA17_Chr1g0203631 29.861 144 92 4 32 169 1121 1261 1.23e-13 68.6
MsaG027977 MtrunA17_Chr7g0250471 29.078 141 91 3 35 171 902 1037 3.13e-13 67.4
MsaG027977 MtrunA17_Chr1g0209211 33.600 125 81 2 53 177 583 705 3.58e-13 67.0
MsaG027977 MtrunA17_Chr4g0018801 28.966 145 93 5 32 170 623 763 3.73e-13 67.0
MsaG027977 MtrunA17_Chr7g0222221 30.818 159 99 4 30 180 148 303 4.03e-13 66.2
MsaG027977 MtrunA17_Chr7g0250431 26.250 160 109 3 35 190 47 201 4.33e-13 65.1
MsaG027977 MtrunA17_Chr5g0413511 28.188 149 99 3 32 173 185 332 5.14e-13 66.2
MsaG027977 MtrunA17_Chr1g0169841 29.032 155 99 4 32 178 940 1091 5.57e-13 66.6
MsaG027977 MtrunA17_Chr5g0400681 29.677 155 95 5 32 178 820 968 6.47e-13 66.6
MsaG027977 MtrunA17_Chr8g0375511 30.818 159 94 5 32 176 970 1126 6.57e-13 66.6
MsaG027977 MtrunA17_Chr7g0222261 30.818 159 99 4 30 180 257 412 6.85e-13 66.2
MsaG027977 MtrunA17_Chr4g0054521 29.375 160 99 5 32 183 817 970 8.61e-13 66.2
MsaG027977 MtrunA17_Chr7g0250381 25.625 160 109 4 35 190 904 1057 8.83e-13 66.2
MsaG027977 MtrunA17_Chr4g0060011 26.875 160 108 3 32 186 442 597 8.86e-13 65.9
MsaG027977 MtrunA17_Chr2g0280191 30.065 153 96 6 32 179 821 967 1.14e-12 65.9
MsaG027977 MtrunA17_Chr2g0281971 30.556 144 91 3 32 170 177 316 1.46e-12 65.1
MsaG027977 MtrunA17_Chr2g0277081 32.530 166 91 7 21 175 805 960 2.01e-12 65.1
MsaG027977 MtrunA17_Chr7g0243401 29.586 169 93 5 32 176 555 721 2.55e-12 64.7
MsaG027977 MtrunA17_Chr7g0233841 27.972 143 98 2 35 173 171 312 3.15e-12 63.9
MsaG027977 MtrunA17_Chr3g0112391 30.405 148 96 3 32 173 473 619 3.99e-12 63.9
MsaG027977 MtrunA17_Chr8g0379571 29.530 149 102 2 32 178 510 657 4.59e-12 63.9
MsaG027977 MtrunA17_Chr7g0250401 26.250 160 109 3 35 190 442 596 4.91e-12 63.9
MsaG027977 MtrunA17_Chr1g0165211 26.452 155 87 4 35 174 1030 1172 6.17e-12 63.5
MsaG027977 MtrunA17_Chr1g0201611 28.082 146 99 2 32 171 231 376 6.21e-12 63.2
MsaG027977 MtrunA17_Chr3g0091461 33.333 150 85 5 32 176 932 1071 7.75e-12 63.2
MsaG027977 MtrunA17_Chr8g0365701 34.862 109 68 2 67 173 20 127 1.08e-11 61.2
MsaG027977 MtrunA17_Chr5g0443121 30.345 145 93 3 32 171 311 452 1.09e-11 62.8
MsaG027977 MtrunA17_Chr3g0095081 29.139 151 96 5 32 175 855 1001 1.15e-11 62.8
MsaG027977 MtrunA17_Chr7g0276571 29.412 153 103 3 29 178 543 693 1.26e-11 62.8
MsaG027977 MtrunA17_Chr2g0296601 30.818 159 98 5 32 180 1080 1236 1.34e-11 62.8
MsaG027977 MtrunA17_Chr4g0058561 31.944 144 90 3 32 170 482 622 1.39e-11 62.4
MsaG027977 MtrunA17_Chr7g0242201 30.345 145 92 3 32 171 172 312 1.43e-11 62.4
MsaG027977 MtrunA17_Chr5g0420181 30.519 154 95 5 32 176 626 776 1.51e-11 62.4
MsaG027977 MtrunA17_Chr4g0000081 29.605 152 104 3 27 178 531 679 1.65e-11 62.4
MsaG027977 MtrunA17_Chr7g0233881 29.814 161 104 6 35 189 803 960 1.70e-11 62.4
MsaG027977 MtrunA17_Chr7g0232631 27.397 146 92 4 35 173 853 991 2.37e-11 62.0
MsaG027977 MtrunA17_Chr7g0250351 25.625 160 110 3 35 190 696 850 2.46e-11 62.0
MsaG027977 MtrunA17_Chr2g0297901 33.533 167 95 7 32 187 102 263 3.31e-11 60.8
MsaG027977 MtrunA17_Chr5g0420161 30.519 154 95 5 32 176 402 552 3.34e-11 61.2
MsaG027977 MtrunA17_Chr2g0317071 26.797 153 104 3 23 170 913 1062 3.54e-11 61.2
MsaG027977 MtrunA17_Chr6g0454621 27.950 161 104 5 27 179 954 1110 3.59e-11 61.2
MsaG027977 MtrunA17_Chr7g0249841 30.263 152 91 5 36 176 433 580 4.07e-11 61.2
MsaG027977 MtrunA17_Chr1g0194541 31.757 148 93 4 32 173 421 566 4.30e-11 61.2
MsaG027977 MtrunA17_Chr4g0069251 31.757 148 87 5 32 171 307 448 5.47e-11 60.8
MsaG027977 MtrunA17_Chr1g0165231 26.452 155 87 4 35 174 1013 1155 5.69e-11 60.8
MsaG027977 MtrunA17_Chr1g0165301 26.452 155 87 4 35 174 1013 1155 5.69e-11 60.8
MsaG027977 MtrunA17_Chr2g0333181 27.673 159 107 3 17 170 153 308 5.81e-11 60.5
MsaG027977 MtrunA17_Chr1g0165261 26.452 155 87 4 35 174 452 594 5.91e-11 60.5
MsaG027977 MtrunA17_Chr8g0373501 32.215 149 89 5 32 171 463 608 6.41e-11 60.5
MsaG027977 MtrunA17_Chr8g0345471 29.412 153 103 4 29 178 538 688 6.51e-11 60.5
MsaG027977 MtrunA17_Chr2g0296591 30.769 156 96 5 32 177 1080 1233 7.83e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG027977 AT5G58300.3 58.503 147 59 2 30 176 485 629 8.31e-48 165
MsaG027977 AT5G58300.1 58.503 147 59 2 30 176 485 629 8.31e-48 165
MsaG027977 AT5G58300.2 58.503 147 59 2 30 176 485 629 8.31e-48 165
MsaG027977 AT2G26730.1 53.691 149 67 2 30 178 475 621 2.03e-44 156
MsaG027977 AT3G08680.1 52.318 151 70 2 27 176 465 614 1.68e-41 148
MsaG027977 AT3G08680.2 52.318 151 70 2 27 176 465 614 1.68e-41 148
MsaG027977 AT5G05160.1 48.667 150 72 3 32 178 471 618 2.66e-40 144
MsaG027977 AT4G23740.1 48.052 154 70 4 28 173 454 605 1.17e-38 140
MsaG027977 AT4G23740.2 48.052 154 70 4 28 173 454 605 1.17e-38 140
MsaG027977 AT1G68400.1 51.701 147 66 4 32 176 493 636 6.59e-38 138
MsaG027977 AT3G17840.1 48.026 152 75 3 30 178 490 640 5.26e-37 135
MsaG027977 AT5G41680.2 51.007 149 68 5 30 176 182 327 2.08e-36 129
MsaG027977 AT5G41680.1 51.007 149 68 5 30 176 208 353 3.20e-36 129
MsaG027977 AT1G64210.1 47.368 152 74 3 30 176 431 581 5.06e-36 132
MsaG027977 AT5G53320.1 44.872 156 74 4 30 185 435 578 8.78e-35 129
MsaG027977 AT1G48480.1 45.517 145 77 2 30 173 496 639 8.97e-35 129
MsaG027977 AT2G36570.1 47.531 162 68 4 30 176 486 645 5.28e-34 127
MsaG027977 AT5G16590.1 40.268 149 88 1 30 178 468 615 5.98e-33 124
MsaG027977 AT3G02880.1 38.255 149 91 1 30 178 470 617 3.18e-32 122
MsaG027977 AT3G51740.1 34.839 155 92 3 27 176 658 808 4.68e-25 102
MsaG027977 AT5G24100.1 35.948 153 90 4 30 178 465 613 3.91e-23 96.3
MsaG027977 AT1G10850.1 40.816 147 82 2 30 173 483 627 1.03e-22 95.1
MsaG027977 AT3G24660.1 40.310 129 73 4 60 186 535 661 3.52e-22 93.6
MsaG027977 AT5G61480.1 34.395 157 92 6 32 182 854 1005 2.80e-18 82.4
MsaG027977 AT1G60630.1 36.735 147 83 2 30 173 476 615 3.92e-18 82.0
MsaG027977 AT3G24240.1 36.250 160 89 5 32 185 921 1073 6.78e-18 81.3
MsaG027977 AT4G31250.1 34.899 149 93 3 32 178 496 642 1.31e-17 80.5
MsaG027977 AT5G48940.1 35.669 157 85 4 32 180 922 1070 1.57e-17 80.1
MsaG027977 AT4G28650.1 32.258 155 98 4 32 182 833 984 6.98e-17 78.6
MsaG027977 AT5G67200.1 33.728 169 83 7 30 189 521 669 9.88e-17 77.8
MsaG027977 AT1G08590.1 33.974 156 95 5 32 182 856 1008 1.01e-16 77.8
MsaG027977 AT1G68690.1 34.014 147 89 4 32 171 502 647 4.24e-16 75.9
MsaG027977 AT1G68690.3 34.014 147 89 4 32 171 502 647 4.24e-16 75.9
MsaG027977 AT1G68690.2 34.014 147 89 4 32 171 502 647 4.24e-16 75.9
MsaG027977 AT5G01890.1 35.897 156 89 5 30 178 809 960 6.96e-16 75.5
MsaG027977 AT1G78530.1 34.247 146 88 4 32 171 199 342 9.62e-16 74.3
MsaG027977 AT3G28040.1 31.847 157 97 3 30 179 854 1007 1.81e-15 74.3
MsaG027977 AT5G07620.1 30.128 156 101 4 30 178 204 358 2.50e-15 73.2
MsaG027977 AT3G24550.1 33.784 148 88 4 32 171 406 551 3.14e-15 73.6
MsaG027977 AT5G38560.1 31.544 149 92 4 32 171 465 612 3.29e-15 73.6
MsaG027977 AT1G17230.2 35.333 150 88 4 32 175 928 1074 5.20e-15 72.8
MsaG027977 AT1G68690.4 33.793 145 88 4 32 169 502 645 6.09e-15 72.8
MsaG027977 AT1G17230.1 35.333 150 88 4 32 175 928 1074 6.64e-15 72.8
MsaG027977 AT1G26150.1 31.210 157 100 4 32 181 556 711 6.83e-15 72.4
MsaG027977 AT3G49670.1 32.298 161 95 5 32 184 818 972 7.01e-15 72.4
MsaG027977 AT1G25320.1 27.976 168 95 4 32 176 535 699 1.49e-14 71.6
MsaG027977 AT1G12460.2 27.451 153 102 2 30 176 588 737 1.59e-14 71.6
MsaG027977 AT1G12460.1 27.451 153 102 2 30 176 727 876 1.64e-14 71.6
MsaG027977 AT4G39400.1 31.788 151 94 4 32 176 1011 1158 1.65e-14 71.6
MsaG027977 AT1G66830.1 33.121 157 79 6 34 172 529 677 1.66e-14 71.2
MsaG027977 AT2G07040.1 29.801 151 102 3 32 180 468 616 1.82e-14 71.2
MsaG027977 AT5G49660.1 29.412 153 96 5 32 177 790 937 1.88e-14 71.2
MsaG027977 AT1G70460.1 33.333 147 90 3 32 171 479 624 3.02e-14 70.5
MsaG027977 AT1G09970.1 31.013 158 91 8 32 179 807 956 3.04e-14 70.9
MsaG027977 AT5G56040.2 32.927 164 88 6 32 178 884 1042 3.66e-14 70.5
MsaG027977 AT3G24540.1 33.333 150 86 5 32 171 309 454 4.00e-14 70.1
MsaG027977 AT5G63930.2 29.814 161 102 5 32 185 870 1026 4.62e-14 70.1
MsaG027977 AT4G26540.1 36.667 120 67 4 61 176 927 1041 5.27e-14 70.1
MsaG027977 AT5G63930.1 29.814 161 102 5 32 185 934 1090 5.97e-14 69.7
MsaG027977 AT2G35620.3 29.655 145 93 3 32 171 429 569 6.95e-14 69.7
MsaG027977 AT2G35620.1 29.655 145 93 3 32 171 429 569 6.95e-14 69.7
MsaG027977 AT2G35620.2 29.655 145 93 3 32 171 429 569 6.95e-14 69.7
MsaG027977 AT2G35620.4 29.655 145 93 3 32 171 429 569 6.95e-14 69.7
MsaG027977 AT2G33170.2 30.464 151 95 5 32 175 954 1101 1.04e-13 69.3
MsaG027977 AT2G33170.1 30.464 151 95 5 32 175 954 1101 1.04e-13 69.3
MsaG027977 AT5G62710.1 29.814 161 103 4 32 186 440 596 1.08e-13 68.9
MsaG027977 AT5G20690.1 30.405 148 100 3 30 176 512 657 1.16e-13 68.9
MsaG027977 AT1G72180.1 32.215 149 88 6 32 173 816 958 1.17e-13 68.9
MsaG027977 AT1G29720.1 31.210 157 93 6 32 178 799 950 1.17e-13 68.9
MsaG027977 AT5G62710.2 29.814 161 103 4 32 186 406 562 1.26e-13 68.9
MsaG027977 AT1G23540.1 31.973 147 92 3 32 171 497 642 1.55e-13 68.6
MsaG027977 AT1G31420.2 28.571 168 95 4 32 186 431 586 1.82e-13 68.2
MsaG027977 AT1G31420.1 28.571 168 95 4 32 186 432 587 1.83e-13 68.2
MsaG027977 AT1G31420.3 28.571 168 95 4 32 186 432 587 1.83e-13 68.2
MsaG027977 AT3G14840.2 34.028 144 87 3 32 170 800 940 1.89e-13 68.6
MsaG027977 AT1G50610.1 32.540 126 79 4 32 153 502 625 2.24e-13 68.2
MsaG027977 AT5G35390.1 30.612 147 99 3 32 178 487 630 2.38e-13 68.2
MsaG027977 AT1G10620.1 32.215 149 89 4 32 171 496 641 3.25e-13 67.8
MsaG027977 AT1G52540.1 31.410 156 100 3 32 183 168 320 3.76e-13 67.0
MsaG027977 AT1G52540.2 31.410 156 100 3 32 183 165 317 3.94e-13 67.0
MsaG027977 AT5G13290.1 27.778 162 111 4 17 176 216 373 4.33e-13 67.0
MsaG027977 AT5G65700.1 32.692 156 93 5 32 181 822 971 4.71e-13 67.4
MsaG027977 AT5G65700.2 32.692 156 93 5 32 181 822 971 4.71e-13 67.4
MsaG027977 AT5G13290.2 27.778 162 111 4 17 176 241 398 5.49e-13 66.6
MsaG027977 AT1G62950.1 30.612 147 93 5 30 171 737 879 5.50e-13 67.0
MsaG027977 AT3G42880.1 26.846 149 106 3 30 177 486 632 7.12e-13 66.6
MsaG027977 AT1G09970.2 29.747 158 94 7 32 179 807 957 7.35e-13 66.6
MsaG027977 AT5G61570.2 27.922 154 100 3 30 178 211 358 8.90e-13 65.9
MsaG027977 AT5G61570.1 27.922 154 100 3 30 178 214 361 9.07e-13 65.9
MsaG027977 AT5G44700.1 33.562 146 83 6 32 165 1081 1224 1.77e-12 65.5
MsaG027977 AT3G20190.1 32.283 127 80 4 32 155 502 625 1.80e-12 65.5
MsaG027977 AT2G18470.1 29.932 147 94 4 32 171 410 554 1.88e-12 65.5
MsaG027977 AT2G18470.3 29.932 147 94 4 32 171 410 554 1.88e-12 65.5
MsaG027977 AT2G18470.2 29.932 147 94 4 32 171 410 554 1.88e-12 65.5
MsaG027977 AT3G56370.1 33.974 156 94 4 30 179 802 954 1.94e-12 65.5
MsaG027977 AT5G16000.1 28.378 148 95 3 32 171 437 581 2.60e-12 65.1
MsaG027977 AT2G01950.1 29.268 164 95 5 32 176 968 1129 2.90e-12 65.1
MsaG027977 AT1G70110.1 28.022 182 98 7 19 178 449 619 3.67e-12 64.7
MsaG027977 AT3G20190.2 32.283 127 80 4 32 155 313 436 4.90e-12 63.9
MsaG027977 AT2G02220.1 30.872 149 95 4 27 170 857 1002 1.25e-11 63.2
MsaG027977 AT3G13380.1 29.412 153 100 3 32 178 987 1137 1.34e-11 63.2
MsaG027977 AT3G45330.1 29.677 155 94 6 27 173 469 616 1.42e-11 62.8
MsaG027977 AT1G70450.1 30.872 149 95 3 32 173 176 323 1.75e-11 62.4
MsaG027977 AT3G19700.1 30.723 166 92 6 32 183 816 972 2.46e-11 62.4
MsaG027977 AT4G02010.1 29.012 162 101 4 32 181 510 669 2.75e-11 62.0
MsaG027977 AT3G15890.1 28.205 156 103 3 32 181 167 319 3.61e-11 61.2
MsaG027977 AT1G15530.1 33.103 145 87 5 32 170 487 627 4.25e-11 61.6
MsaG027977 AT5G58150.1 30.612 147 90 4 32 177 647 782 4.75e-11 61.2
MsaG027977 AT1G55610.1 28.477 151 100 3 32 176 989 1137 5.03e-11 61.2
MsaG027977 AT1G55610.2 28.477 151 100 3 32 176 989 1137 5.03e-11 61.2
MsaG027977 AT3G13065.1 32.394 142 93 3 29 170 542 680 5.39e-11 61.2
MsaG027977 AT3G17420.1 31.293 147 89 4 32 171 282 423 5.50e-11 60.8
MsaG027977 AT4G05200.1 29.762 168 103 7 32 189 474 636 5.63e-11 61.2
MsaG027977 AT4G05200.2 29.762 168 103 7 32 189 492 654 6.35e-11 60.8
MsaG027977 AT4G28490.1 29.221 154 95 4 32 177 821 968 6.37e-11 61.2
MsaG027977 AT1G53730.1 36.957 92 55 2 27 116 541 631 8.58e-11 60.5
MsaG027977 AT4G04490.1 30.137 146 86 5 32 170 467 603 9.90e-11 60.5

Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCTTGAAATTCTTAC+AGG 0.215774 5:+55271644 MsaT027977.1:CDS
TCATAGATCCTTTGGTCTTC+AGG 0.255931 5:-55269795 None:intergenic
TTGATCTTCCAAGGTGGATT+AGG 0.331694 5:+55271705 MsaT027977.1:CDS
AGATCATAAGCAGAATAAAA+TGG 0.371183 5:-55271674 None:intergenic
CTAACAACTTCGTCCATTGT+TGG 0.395312 5:-55271863 None:intergenic
TGTCAAAGGTGGAAGGTAAC+AGG 0.407771 5:+55271840 MsaT027977.1:CDS
AAGAGTGATGTTTACAACTT+TGG 0.419117 5:+55271617 MsaT027977.1:CDS
AGGTTGGATCATAGATCCTT+TGG 0.455453 5:-55269803 None:intergenic
AGGAAGAGAAATTGTTGAAG+AGG 0.467104 5:+55271781 MsaT027977.1:CDS
TGAGATGCTTCAGATTGTAT+TGG 0.469033 5:+55271811 MsaT027977.1:CDS
TTCTTGAGCGTGGTATCCGT+TGG 0.475494 5:-55271564 None:intergenic
AGAAATTGTTGAAGAGGAGA+TGG 0.475894 5:+55271787 MsaT027977.1:CDS
ACATCAGTGATGCAACCATC+AGG 0.495712 5:-55271497 None:intergenic
TCCAAGGTGGATTAGGTCTG+TGG 0.506271 5:+55271712 MsaT027977.1:CDS
CTGTATGAGCTAGATGAAAA+CGG 0.518784 5:+55269846 MsaT027977.1:CDS
TTGACATGGTTGATCTTCCA+AGG 0.529419 5:+55271696 MsaT027977.1:CDS
TTCAATGAGGAGATGATGAG+AGG 0.529625 5:+55271761 MsaT027977.1:CDS
GATGGTTGCATCACTGATGT+TGG 0.543268 5:+55271500 MsaT027977.1:CDS
GGTCTGTGGTTTGTGAGGAA+TGG 0.546647 5:+55271726 MsaT027977.1:CDS
GATTAGGTCTGTGGTTTGTG+AGG 0.551466 5:+55271721 MsaT027977.1:CDS
TTCAGCGCAAATGTCCATCC+AGG 0.556141 5:-55269823 None:intergenic
TTCTGCTTATGATCTTGACA+TGG 0.561366 5:+55271682 MsaT027977.1:CDS
TGTATTGGCTTGTGTGTCAA+AGG 0.565320 5:+55271826 MsaT027977.1:CDS
GGTCTTCAGGAAACATCCCT+AGG 0.569027 5:-55269782 None:intergenic
AAGAAATGTTTCATGGACCT+AGG 0.582195 5:+55269765 None:intergenic
TTCTAGTGTTATGAGTACAT+TGG 0.587586 5:-55271474 None:intergenic
GCGCAAATGTCCATCCAGGT+TGG 0.587752 5:-55269819 None:intergenic
GGAAGGTAACAGGCCAACAA+TGG 0.590867 5:+55271850 MsaT027977.1:CDS
AGAAATGTTTCATGGACCTA+GGG 0.592884 5:+55269766 None:intergenic
GATCTATGATCCAACCTGGA+TGG 0.601268 5:+55269809 MsaT027977.1:CDS
TGGTTGATGAGGTGTTCACA+AGG 0.603585 5:-55271532 None:intergenic
ACCACAGACCTAATCCACCT+TGG 0.605237 5:-55271713 None:intergenic
ATTCAGTTACTTCTTGAGCG+TGG 0.616342 5:-55271574 None:intergenic
TGTGGTTTGTGAGGAATGGA+CGG 0.622419 5:+55271730 MsaT027977.1:CDS
CTCATAACACTAGAACCTGA+TGG 0.622482 5:+55271482 MsaT027977.1:CDS
AAAGGATCTATGATCCAACC+TGG 0.629967 5:+55269805 MsaT027977.1:CDS
GGATGTTTCCTGAAGACCAA+AGG 0.631486 5:+55269787 MsaT027977.1:CDS
GGATCTTGACATGGTTGATG+AGG 0.632032 5:-55271543 None:intergenic
TGAGCTAGATGAAAACGGAA+AGG 0.633021 5:+55269851 MsaT027977.1:CDS
ATTGGCTTGTGTGTCAAAGG+TGG 0.634697 5:+55271829 MsaT027977.1:CDS
GTATCCGTTGGATCTTGACA+TGG 0.645367 5:-55271552 None:intergenic
TCAACCATGTCAAGATCCAA+CGG 0.650637 5:+55271548 MsaT027977.1:CDS
ACATGGTTGATCTTCCAAGG+TGG 0.663128 5:+55271699 MsaT027977.1:CDS
TTATACATTAGATTCAGACT+CGG 0.687875 5:-55271937 None:intergenic
GCTTGTGTGTCAAAGGTGGA+AGG 0.689374 5:+55271833 MsaT027977.1:CDS
GGTTGATGAGGTGTTCACAA+GGG 0.691472 5:-55271531 None:intergenic
GTAAACATCACTCTTCTGAG+TGG 0.720243 5:-55271609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 55269777 55271946 55269777 ID=MsaG027977
Chr5 mRNA 55269777 55271946 55269777 ID=MsaT027977.1;Parent=MsaG027977
Chr5 exon 55269777 55269872 55269777 ID=MsaT027977.1.exon1;Parent=MsaT027977.1
Chr5 CDS 55269777 55269872 55269777 ID=cds.MsaT027977.1;Parent=MsaT027977.1
Chr5 exon 55271470 55271946 55271470 ID=MsaT027977.1.exon2;Parent=MsaT027977.1
Chr5 CDS 55271470 55271946 55271470 ID=cds.MsaT027977.1;Parent=MsaT027977.1
Gene Sequence

>MsaT027977.1

ATGGACCTAGGGATGTTTCCTGAAGACCAAAGGATCTATGATCCAACCTGGATGGACATTTGCGCTGAACTGTATGAGCTAGATGAAAACGGAAAGTTAACCAATGTACTCATAACACTAGAACCTGATGGTTGCATCACTGATGTTGGACTTACTACCCTTGTGAACACCTCATCAACCATGTCAAGATCCAACGGATACCACGCTCAAGAAGTAACTGAATCAAGAAAGATCGCCACTCAGAAGAGTGATGTTTACAACTTTGGTGTACTTCTTCTTGAAATTCTTACAGGAAAGACTCCATTTTATTCTGCTTATGATCTTGACATGGTTGATCTTCCAAGGTGGATTAGGTCTGTGGTTTGTGAGGAATGGACGGCTGAAGTTTTCAATGAGGAGATGATGAGAGGAAGAGAAATTGTTGAAGAGGAGATGGTTGAGATGCTTCAGATTGTATTGGCTTGTGTGTCAAAGGTGGAAGGTAACAGGCCAACAATGGACGAAGTTGTTAGAAACATAGTAGAAATTAGCCAGCCTAAGTTGAAAAAAGAGTACTACATCTTCCGAGTCTGA
Protein sequence

>MsaT027977.1

MDLGMFPEDQRIYDPTWMDICAELYELDENGKLTNVLITLEPDGCITDVGLTTLVNTSSTMSRSNGYHAQEVTESRKIATQKSDVYNFGVLLLEILTGKTPFYSAYDLDMVDLPRWIRSVVCEEWTAEVFNEEMMRGREIVEEEMVEMLQIVLACVSKVEGNRPTMDEVVRNIVEISQPKLKKEYYIFRV*