AlfalfaGEDB | MsaG028017

M. sativa ssp. caerulea / MsaG028017

KEGG: K15032
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009303 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042254 GO:0042255 GO:0042793 GO:0042794 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028017	XP_003615503.1	91.475	434	17	2	1	414	19	452	0.0	763

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028017	sp\|Q9ZT96\|MTEF4_ARATH	69.212	406	100	2	34	414	55	460	0.0	553

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028017	tr\|G7K677\|G7K677_MEDTR	91.475	434	17	2	1	414	19	452	0.0	763

TFs/TRs:

Gene ID	Type	Classification
MsaG028017	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000127	MsaG028017	0.814150	3.078452e-51	5.824930e-49
MsaG000153	MsaG028017	0.821451	7.047121e-53	1.610571e-50
MsaG000761	MsaG028017	0.800118	2.798607e-48	3.793836e-46
MsaG001038	MsaG028017	0.800018	2.931577e-48	3.965358e-46
MsaG001145	MsaG028017	0.801617	1.387175e-48	1.945355e-46
MsaG001369	MsaG028017	0.816700	8.390126e-52	1.693530e-49
MsaG001520	MsaG028017	0.801225	1.667596e-48	2.317843e-46
MsaG001601	MsaG028017	0.800141	2.767953e-48	3.754324e-46
MsaG002727	MsaG028017	0.800117	2.799439e-48	3.794929e-46
MsaG003987	MsaG028017	0.829208	1.049808e-54	2.969799e-52
MsaG004045	MsaG028017	0.806524	1.337591e-49	2.101711e-47
MsaG004157	MsaG028017	0.805697	1.992804e-49	3.070654e-47
MsaG004329	MsaG028017	0.809392	3.303987e-50	5.559943e-48
MsaG004432	MsaG028017	0.809922	2.544775e-50	4.337539e-48
MsaG004400	MsaG028017	0.817499	5.561309e-52	1.145883e-49
MsaG005256	MsaG028017	0.822225	4.674038e-53	1.090503e-50
MsaG005379	MsaG028017	0.833071	1.192789e-55	3.773159e-53
MsaG005479	MsaG028017	0.805393	2.306445e-49	3.528779e-47
MsaG005937	MsaG028017	0.820892	9.470212e-53	2.132547e-50
MsaG007099	MsaG028017	0.803163	6.686019e-49	9.714276e-47
MsaG007475	MsaG028017	0.816153	1.110940e-51	2.211292e-49
MsaG007583	MsaG028017	0.806854	1.140400e-49	1.805764e-47
MsaG007601	MsaG028017	0.807205	9.617732e-50	1.535601e-47
MsaG007988	MsaG028017	0.805962	1.754538e-49	2.720314e-47
MsaG008006	MsaG028017	0.800964	1.884190e-48	2.603545e-46
MsaG008256	MsaG028017	0.826863	3.829070e-54	1.014276e-51
MsaG008427	MsaG028017	0.808832	4.348373e-50	7.219709e-48
MsaG009005	MsaG028017	0.810097	2.334205e-50	3.995562e-48
MsaG009193	MsaG028017	0.817400	5.850955e-52	1.202517e-49
MsaG009351	MsaG028017	0.813590	4.086360e-51	7.624404e-49
MsaG009739	MsaG028017	0.805920	1.790543e-49	2.773402e-47
MsaG010628	MsaG028017	0.806380	1.434262e-49	2.245927e-47
MsaG010943	MsaG028017	0.806662	1.251262e-49	1.972438e-47
MsaG012026	MsaG028017	0.806028	1.699749e-49	2.639467e-47
MsaG012355	MsaG028017	0.815721	1.385283e-51	2.727238e-49
MsaG012528	MsaG028017	0.801155	1.723443e-48	2.391702e-46
MsaG012650	MsaG028017	0.806123	1.623087e-49	2.526187e-47
MsaG013390	MsaG028017	0.801191	1.694273e-48	2.353174e-46
MsaG017479	MsaG028017	0.815158	1.845908e-51	3.582521e-49
MsaG017613	MsaG028017	0.809216	3.603005e-50	6.037274e-48
MsaG017884	MsaG028017	0.805904	1.803816e-49	2.792971e-47
MsaG018252	MsaG028017	0.831634	2.695654e-55	8.178033e-53
MsaG018256	MsaG028017	0.820523	1.149827e-52	2.564151e-50
MsaG018466	MsaG028017	0.802630	8.605162e-49	1.235031e-46
MsaG018494	MsaG028017	0.814499	2.580803e-51	4.926227e-49
MsaG018634	MsaG028017	0.801456	1.496133e-48	2.090521e-46
MsaG019139	MsaG028017	0.804555	3.446120e-49	5.170872e-47
MsaG019620	MsaG028017	0.827813	2.271886e-54	6.180390e-52
MsaG019676	MsaG028017	0.817970	4.358383e-52	9.090002e-50
MsaG020583	MsaG028017	0.800009	2.943811e-48	3.981123e-46
MsaG020744	MsaG028017	0.806834	1.151034e-49	1.821763e-47
MsaG020712	MsaG028017	0.813835	3.610696e-51	6.778607e-49
MsaG023612	MsaG028017	0.803981	4.533204e-49	6.712125e-47
MsaG024001	MsaG028017	0.800372	2.485751e-48	3.389199e-46
MsaG024336	MsaG028017	0.822500	4.037618e-53	9.490217e-51
MsaG024346	MsaG028017	0.810585	1.833810e-50	3.176574e-48
MsaG024829	MsaG028017	0.814970	2.031070e-51	3.923382e-49
MsaG025119	MsaG028017	0.802031	1.141757e-48	1.616290e-46
MsaG025349	MsaG028017	0.800720	2.112600e-48	2.903256e-46
MsaG025448	MsaG028017	0.804303	3.888656e-49	5.800978e-47
MsaG026280	MsaG028017	0.808827	4.360550e-50	7.238905e-48
MsaG026821	MsaG028017	0.837859	7.442891e-57	2.717811e-54
MsaG027619	MsaG028017	0.826326	5.134081e-54	1.339750e-51
MsaG027757	MsaG028017	0.801111	1.759408e-48	2.439189e-46
MsaG027891	MsaG028017	0.806408	1.414919e-49	2.217135e-47
MsaG028017	MsaG028107	0.812770	6.170510e-51	1.127922e-48
MsaG028017	MsaG028330	0.835167	3.579422e-56	1.204957e-53
MsaG028017	MsaG028645	0.817260	6.290761e-52	1.288273e-49
MsaG028017	MsaG029038	0.803581	5.484047e-49	8.044917e-47
MsaG028017	MsaG030781	0.811228	1.333173e-50	2.345959e-48
MsaG028017	MsaG032634	0.815883	1.275690e-51	2.521765e-49
MsaG028017	MsaG035334	0.808329	5.562834e-50	9.124511e-48
MsaG028017	MsaG040099	0.814401	2.711886e-51	5.163925e-49
MsaG028017	MsaG040483	0.806178	1.581066e-49	2.463982e-47
MsaG028017	MsaG040748	0.825208	9.427916e-54	2.385160e-51
MsaG028017	MsaG041055	0.812450	7.244235e-51	1.313709e-48
MsaG028017	MsaG041075	0.817058	6.980194e-52	1.422033e-49
MsaG028017	MsaG041354	0.819416	2.054353e-52	4.449232e-50
MsaG028017	MsaG043333	0.819073	2.457889e-52	5.275356e-50
MsaG028017	MsaG044049	0.806911	1.109075e-49	1.758531e-47
MsaG028017	MsaG044533	0.849059	7.824607e-60	4.106910e-57
MsaG028017	MsaG044536	0.861601	1.807072e-63	1.493282e-60
MsaG028017	MsaG045061	0.802473	9.268360e-49	1.325428e-46
MsaG028017	MsaG045148	0.815244	1.767198e-51	3.437365e-49
MsaG028017	MsaG045517	0.820844	9.709153e-53	2.183524e-50
MsaG028017	MsaG046178	0.812439	7.286060e-51	1.320922e-48
MsaG028017	MsaG046913	0.821979	5.328165e-53	1.234938e-50
MsaG028017	MsaG047166	0.802657	8.496716e-49	1.220217e-46
MsaG028017	MsaG002771	0.802869	7.685627e-49	1.109082e-46
MsaG028017	MsaG009147	0.808559	4.971257e-50	8.199593e-48
MsaG028017	MsaG008830	0.803864	4.791943e-49	7.075995e-47
MsaG028017	MsaG008719	0.821509	6.835966e-53	1.564702e-50
MsaG028017	MsaG006008	0.812408	7.398762e-51	1.340334e-48
MsaG028017	MsaG008139	0.848038	1.495477e-59	7.583600e-57
MsaG028017	MsaG012533	0.814498	2.581730e-51	4.927861e-49
MsaG028017	MsaG012407	0.814646	2.394807e-51	4.588107e-49
MsaG028017	MsaG014187	0.808510	5.090732e-50	8.386815e-48
MsaG028017	MsaG012992	0.822701	3.629101e-53	8.576206e-51
MsaG028017	MsaG013392	0.800738	2.094476e-48	2.879508e-46
MsaG028017	MsaG022126	0.845028	9.826544e-59	4.507563e-56
MsaG028017	MsaG026612	0.806339	1.462864e-49	2.288519e-47
MsaG028017	MsaG026813	0.823353	2.560395e-53	6.158612e-51
MsaG028017	MsaG025429	0.812394	7.450992e-51	1.349315e-48
MsaG028017	MsaG031611	0.806280	1.504969e-49	2.351149e-47
MsaG028017	MsaG031806	0.800243	2.639959e-48	3.588915e-46
MsaG028017	MsaG036911	0.822121	4.941649e-53	1.149702e-50
MsaG028017	MsaG037636	0.826993	3.564181e-54	9.475274e-52
MsaG028017	MsaG044755	0.804898	2.925426e-49	4.424626e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028017	MtrunA17_Chr5g0428941	91.475	434	17	2	1	414	19	452	0.0	763
MsaG028017	MtrunA17_Chr1g0212691	51.429	350	153	1	82	414	71	420	1.39e-125	377
MsaG028017	MtrunA17_Chr8g0391881	45.584	351	143	2	82	415	49	368	1.40e-103	317
MsaG028017	MtrunA17_Chr8g0375171	78.641	103	22	0	405	507	292	394	4.26e-43	165
MsaG028017	MtrunA17_Chr3g0136911	76.699	103	24	0	405	507	294	396	1.72e-42	163
MsaG028017	MtrunA17_Chr4g0034981	26.398	322	214	6	115	414	235	555	5.75e-25	109
MsaG028017	MtrunA17_Chr4g0043941	20.849	259	184	3	155	411	46	285	3.56e-22	97.8
MsaG028017	MtrunA17_Chr4g0043941	23.182	220	160	3	120	330	43	262	3.55e-17	82.8
MsaG028017	MtrunA17_Chr2g0294671	25.200	250	160	5	185	414	210	452	7.79e-20	92.8
MsaG028017	MtrunA17_Chr2g0294671	23.413	252	180	5	118	365	211	453	3.09e-15	78.6
MsaG028017	MtrunA17_Chr5g0445491	23.507	268	172	7	151	410	192	434	1.79e-19	91.7
MsaG028017	MtrunA17_Chr5g0445491	24.153	236	166	5	113	340	221	451	4.32e-13	71.6
MsaG028017	MtrunA17_Chr6g0448821	22.559	297	205	7	122	414	51	326	2.45e-16	80.9
MsaG028017	MtrunA17_Chr6g0448821	24.268	239	135	6	119	317	119	351	2.85e-13	71.6
MsaG028017	MtrunA17_Chr2g0304101	24.186	215	139	6	202	414	82	274	2.75e-11	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028017	AT4G02990.2	69.212	406	100	2	34	414	55	460	0.0	553
MsaG028017	AT4G02990.1	69.212	406	100	2	34	414	55	460	0.0	553
MsaG028017	AT2G44020.1	48.571	350	163	1	82	414	76	425	8.01e-117	355
MsaG028017	AT2G21710.1	25.524	286	194	2	147	414	278	562	2.86e-28	119
MsaG028017	AT2G21710.2	25.182	274	186	2	153	408	284	556	4.66e-26	112
MsaG028017	AT2G21710.3	25.368	272	184	2	153	406	284	554	8.52e-26	112
MsaG028017	AT3G18090.2	46.729	107	56	1	402	507	163	269	1.64e-21	99.4
MsaG028017	AT3G18090.3	46.729	107	56	1	402	507	163	269	1.87e-21	99.4
MsaG028017	AT3G18090.1	46.729	107	56	1	402	507	163	269	1.93e-21	99.4
MsaG028017	AT3G23780.1	45.000	100	55	0	402	501	281	380	2.77e-20	95.9
MsaG028017	AT3G23780.2	45.000	100	55	0	402	501	281	380	2.77e-20	95.9
MsaG028017	AT4G14605.2	26.749	243	151	8	172	412	218	435	2.57e-18	88.6
MsaG028017	AT4G14605.2	24.887	221	157	3	145	365	227	438	2.11e-14	76.3
MsaG028017	AT4G14605.1	26.749	243	151	8	172	412	218	435	2.57e-18	88.6
MsaG028017	AT4G14605.1	24.887	221	157	3	145	365	227	438	2.11e-14	76.3
MsaG028017	AT4G38160.2	19.923	261	186	5	155	411	46	287	1.25e-17	85.1
MsaG028017	AT4G38160.2	21.145	227	166	5	116	330	39	264	7.68e-16	79.7
MsaG028017	AT4G38160.4	19.923	261	186	5	155	411	46	287	1.71e-17	84.3
MsaG028017	AT4G38160.4	21.145	227	166	5	116	330	39	264	1.18e-15	79.0
MsaG028017	AT4G38160.1	19.923	261	186	5	155	411	46	287	1.71e-17	84.3
MsaG028017	AT4G38160.1	21.145	227	166	5	116	330	39	264	1.18e-15	79.0
MsaG028017	AT4G38160.3	19.923	261	186	5	155	411	46	287	2.02e-17	84.7
MsaG028017	AT4G38160.3	21.145	227	166	5	116	330	39	264	1.39e-15	79.3
MsaG028017	AT5G55580.2	21.887	265	180	6	151	410	79	321	7.51e-17	83.2
MsaG028017	AT5G55580.2	24.359	234	166	5	111	337	106	335	1.10e-13	73.6
MsaG028017	AT5G55580.1	21.887	265	180	6	151	410	185	427	2.04e-16	82.4
MsaG028017	AT5G55580.1	24.359	234	166	5	111	337	212	441	2.11e-13	73.2
MsaG028017	AT1G78930.1	21.053	304	210	7	118	414	264	544	6.92e-16	81.3
MsaG028017	AT1G78930.1	26.705	176	123	3	135	309	392	562	2.04e-13	73.6
MsaG028017	AT5G55580.3	24.227	194	140	4	151	340	185	375	1.18e-14	76.6
MsaG028017	AT5G55580.3	24.444	225	161	5	143	364	144	362	5.92e-13	71.2

Find 134 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTAGATTCCCGGAGATTT+TGG	0.122651	5:-55813235	MsaT028017.1:CDS
GCTTGATTATCTTGGTAAAT+TGG	0.171843	5:-55813505	MsaT028017.1:CDS
GAGACACAACCTTATATTCT+TGG	0.218625	5:-55813126	MsaT028017.1:CDS
TATGTCTTTCCGAACATTAA+AGG	0.244144	5:-55809644	MsaT028017.1:CDS
TTCCCAGCATTCTTCACTTA+TGG	0.257292	5:-55812700	MsaT028017.1:intron
AATTGCCATGTAATTGTATT+AGG	0.259846	5:-55813908	MsaT028017.1:CDS
GGAAAGGCCTTTGGAAGATT+TGG	0.281167	5:-55812728	MsaT028017.1:CDS
TTATATTCTTGGATTCGATT+TGG	0.301999	5:-55813115	MsaT028017.1:CDS
ACATCTGTTGCTTATTTGAT+TGG	0.305827	5:-55813294	MsaT028017.1:CDS
GCTCAATTCTGTGCTTGATT+TGG	0.309060	5:-55812956	MsaT028017.1:CDS
ACAAATGTGAAACATTTCAT+AGG	0.337702	5:-55809754	MsaT028017.1:CDS
AACAACTATCCTCTTGTATT+GGG	0.341713	5:-55813558	MsaT028017.1:CDS
TAACAACTATCCTCTTGTAT+TGG	0.342324	5:-55813559	MsaT028017.1:CDS
AGTTTGAATCCCAACACTTC+AGG	0.346326	5:+55813333	None:intergenic
GCCGGTGGTCAAGTATCTTC+AGG	0.347359	5:-55813403	MsaT028017.1:CDS
TTTCTTAGAGGAACGTGTTA+AGG	0.353840	5:-55809714	MsaT028017.1:CDS
TTCATAACATCAACCGTAAC+AGG	0.355753	5:+55813630	None:intergenic
GAATGACCAAATGTTAGAAT+TGG	0.365180	5:+55813960	None:intergenic
CATGGTGAAGGTTCTATTAC+TGG	0.367539	5:-55809591	MsaT028017.1:CDS
CTTGATTATCTTGGTAAATT+GGG	0.369437	5:-55813504	MsaT028017.1:CDS
AAGCTTCAATGTTCTGTTGC+TGG	0.371075	5:-55813867	MsaT028017.1:CDS
GATTTGGATTCTGAGGATTT+CGG	0.371653	5:-55812940	MsaT028017.1:CDS
GTTGCTTATTTGATTGGAAT+TGG	0.373643	5:-55813288	MsaT028017.1:CDS
TCTTCAAGGGATTTGACGTT+TGG	0.374789	5:+55813078	None:intergenic
ATCTTGGTAAATTGGGAGTT+AGG	0.378790	5:-55813497	MsaT028017.1:CDS
AAAATGCCAATTCTAACATT+TGG	0.379697	5:-55813966	MsaT028017.1:CDS
CTTCTCTTATCTGCAAGCTT+TGG	0.382697	5:+55812982	None:intergenic
GTTCCTGTGCTTGATTATCT+TGG	0.385032	5:-55813513	MsaT028017.1:CDS
AAATCGAATCCAAGAATATA+AGG	0.400009	5:+55813117	None:intergenic
GCCGAACATTAAACTCTTCA+AGG	0.400358	5:+55813064	None:intergenic
ACCCGCATCCCCAAAATCTC+CGG	0.400611	5:+55813225	None:intergenic
TTCTTAGAGGAACGTGTTAA+GGG	0.407500	5:-55809713	MsaT028017.1:CDS
TGACGAAATTCAAAGGAAAC+GGG	0.418250	5:-55813787	MsaT028017.1:CDS
TATCTGCAAGCTTTGGCTCT+AGG	0.421664	5:+55812989	None:intergenic
TATGAGTTCTTGCGAGGAAT+CGG	0.426180	5:-55813687	MsaT028017.1:CDS
TCACATGCTTGGAAGCGAAT+GGG	0.431736	5:-55809478	MsaT028017.1:CDS
ATGTAGTGTCAAGAAGAATA+TGG	0.433633	5:-55813535	MsaT028017.1:CDS
AGGTATCTTAACTAGATTCC+CGG	0.436019	5:-55813244	MsaT028017.1:CDS
TTTGTCGTCGGTTTCGCGAA+TGG	0.437046	5:+55809772	None:intergenic
GCTTCATTCCAGTGTGGTTG+TGG	0.443280	5:-55813433	MsaT028017.1:CDS
GTGGAGTATCTGGAAAGCTT+GGG	0.446638	5:-55813180	MsaT028017.1:CDS
GCTCAGTATCCTGACATCAT+TGG	0.449340	5:-55813018	MsaT028017.1:CDS
TCAAGACCATCAAGTTCATC+AGG	0.450633	5:+55813657	None:intergenic
TGTGGAGTATCTGGAAAGCT+TGG	0.452920	5:-55813181	MsaT028017.1:CDS
AAGTGAGATGGAAAGGCCTT+TGG	0.454521	5:-55812737	MsaT028017.1:CDS
CTGGTAGGACGTATAGTTAT+AGG	0.454647	5:-55813848	MsaT028017.1:CDS
ATTGTTCCTGATGAACTTGA+TGG	0.456166	5:-55813663	MsaT028017.1:CDS
GACCGATGCTGCTGATTCGC+GGG	0.463447	5:-55813826	MsaT028017.1:CDS
TCGGAAAGACATACAAGTTA+AGG	0.463583	5:+55809654	None:intergenic
CCGGTGGTCAAGTATCTTCA+GGG	0.466032	5:-55813402	MsaT028017.1:CDS
TGATTCGCGGGGATCCAAAC+GGG	0.468998	5:-55813814	MsaT028017.1:CDS
AAAGTGCACTTTCACATGCT+TGG	0.469234	5:-55809489	MsaT028017.1:CDS
GAGAGGTATCCTGAAGTGTT+GGG	0.470423	5:-55813342	MsaT028017.1:CDS
AATTTCGTCAGAGTCCCGTT+TGG	0.471574	5:+55813800	None:intergenic
CTTTCCAGATACTCCACAAA+AGG	0.473709	5:+55813186	None:intergenic
CTGACGAAATTCAAAGGAAA+CGG	0.475760	5:-55813788	MsaT028017.1:CDS
AAACCATAAGTGAAGAATGC+TGG	0.479920	5:+55812697	None:intergenic
CAAATGTGAAACATTTCATA+GGG	0.489444	5:-55809753	MsaT028017.1:CDS
CTGATTCGCGGGGATCCAAA+CGG	0.493660	5:-55813815	MsaT028017.1:CDS
CAAATGAGGAAGATGATTGT+TGG	0.494500	5:-55812820	MsaT028017.1:CDS
TCGAAATAAGAGGCTTGAGT+TGG	0.497335	5:-55809538	MsaT028017.1:CDS
GTGTTGGGATTCAAACTTGA+GGG	0.498220	5:-55813327	MsaT028017.1:CDS
TGTGCTTGATTTGGATTCTG+AGG	0.499387	5:-55812947	MsaT028017.1:CDS
ATCTGAAATTAAGAAAGATA+AGG	0.501088	5:-55813730	MsaT028017.1:CDS
CCCTTGAAGAGTTTAATGTT+CGG	0.504897	5:-55813065	MsaT028017.1:CDS
AATAAGAGGCTTGAGTTGGC+TGG	0.507515	5:-55809534	MsaT028017.1:CDS
GGCACGGTACCTGGCATACA+TGG	0.508318	5:-55809609	MsaT028017.1:CDS
TATTTGATTGGAATTGGTGT+TGG	0.509680	5:-55813282	MsaT028017.1:CDS
AAGGCCTTTCCATCTCACTT+TGG	0.511878	5:+55812740	None:intergenic
TGAGAGGTATCCTGAAGTGT+TGG	0.512556	5:-55813343	MsaT028017.1:CDS
CCACGTTAACGCAGTTCTTG+CGG	0.514225	5:-55813470	MsaT028017.1:CDS
TGTTACGGTTGATGTTATGA+AGG	0.514841	5:-55813628	MsaT028017.1:CDS
TGGTCTTGAACTTCCTGTTA+CGG	0.514972	5:-55813643	MsaT028017.1:CDS
GGGATGACTTTCGAAATAAG+AGG	0.517646	5:-55809548	MsaT028017.1:CDS
TTCACATGCTTGGAAGCGAA+TGG	0.518263	5:-55809479	MsaT028017.1:CDS
AGTCTAGCAATAGCTAGCCT+TGG	0.521140	5:+55813153	None:intergenic
TGTTTAAAGCAAGTAGTTGA+GGG	0.521469	5:+55812794	None:intergenic
AGGTCGGTTCCAATGATGTC+AGG	0.523721	5:+55813009	None:intergenic
AACCATAAGTGAAGAATGCT+GGG	0.524107	5:+55812698	None:intergenic
AATTTCAGATAAACTCGGAC+GGG	0.532219	5:+55813743	None:intergenic
CCCGCATCCCCAAAATCTCC+GGG	0.534445	5:+55813226	None:intergenic
GGACCGATGCTGCTGATTCG+CGG	0.542723	5:-55813827	MsaT028017.1:CDS
TGCAAGCTTTGGCTCTAGGT+CGG	0.543533	5:+55812993	None:intergenic
ATCTTCCTAATACAATTACA+TGG	0.548780	5:+55813903	None:intergenic
CGATTACTTCCAAAGTGAGA+TGG	0.549323	5:-55812749	MsaT028017.1:CDS
AATTCAAAGGAAACGGGGAG+GGG	0.549865	5:-55813781	MsaT028017.1:CDS
TTCTTAATTTCAGATAAACT+CGG	0.551846	5:+55813738	None:intergenic
AAATGTTTCACATTTGTCGT+CGG	0.555112	5:+55809760	None:intergenic
ATGTTTAAAGCAAGTAGTTG+AGG	0.555715	5:+55812793	None:intergenic
TCCCCGCGAATCAGCAGCAT+CGG	0.556978	5:+55813824	None:intergenic
AAATTCAAAGGAAACGGGGA+GGG	0.559126	5:-55813782	MsaT028017.1:CDS
CCCTGAAGATACTTGACCAC+CGG	0.559238	5:+55813402	None:intergenic
GAACCTTCACCATGTATGCC+AGG	0.560012	5:+55809600	None:intergenic
CACATGCTTGGAAGCGAATG+GGG	0.560195	5:-55809477	MsaT028017.1:CDS
TGCTTGGAAGCGAATGGGGA+AGG	0.560897	5:-55809473	MsaT028017.1:CDS
ATCGATTATGAAGAGGGAGA+TGG	0.561643	5:-55809821	MsaT028017.1:CDS
CCGCAAGAACTGCGTTAACG+TGG	0.564848	5:+55813470	None:intergenic
AGGATACTGAGCAATTATAG+AGG	0.570014	5:+55813029	None:intergenic
CACAAGATCCACAACCACAC+TGG	0.570218	5:+55813425	None:intergenic
GATCTCATCGATTATGAAGA+GGG	0.576315	5:-55809827	MsaT028017.1:CDS
AGAACACGAGGAATATCATC+CGG	0.579370	5:+55813366	None:intergenic
TGTGGTTGTGGATCTTGTGC+CGG	0.579644	5:-55813421	MsaT028017.1:CDS
GGTCAAGTATCTTCAGGGGA+TGG	0.581823	5:-55813397	MsaT028017.1:CDS
ACTTCCAAAGTGAGATGGAA+AGG	0.582725	5:-55812744	MsaT028017.1:CDS
ATATTCCTCGTGTTCTTGAG+AGG	0.588108	5:-55813359	MsaT028017.1:CDS
GACGAACATCTTGATCTCCA+TGG	0.589753	5:+55809434	None:intergenic
ACACTGGAATGAAGCACTTG+TGG	0.589824	5:+55813441	None:intergenic
CCGAACATTAAACTCTTCAA+GGG	0.593619	5:+55813065	None:intergenic
TCAGGGGATGGATATCAAGC+CGG	0.594300	5:-55813385	MsaT028017.1:CDS
ATAAGCAACAGATGTACTCA+TGG	0.595928	5:+55813302	None:intergenic
ACACTACATCCCAATACAAG+AGG	0.604604	5:+55813549	None:intergenic
GCTCTGCAGAGAGACCTCCA+TGG	0.607851	5:-55809451	MsaT028017.1:CDS
TGATCTCATCGATTATGAAG+AGG	0.609812	5:-55809828	MsaT028017.1:CDS
TTCAATGTTCTGTTGCTGGT+AGG	0.612971	5:-55813863	MsaT028017.1:CDS
TTACCAAGATAATCAAGCAC+AGG	0.617876	5:+55813510	None:intergenic
TGGAAAGCTTGGGTATTCCA+AGG	0.618103	5:-55813170	MsaT028017.1:CDS
TAATTTCAGATAAACTCGGA+CGG	0.623058	5:+55813742	None:intergenic
ATTGTTTATGAGTTCTTGCG+AGG	0.628501	5:-55813693	MsaT028017.1:CDS
GGGACTCTGACGAAATTCAA+AGG	0.632832	5:-55813794	MsaT028017.1:CDS
AATTCAACCAAATCTTCCAA+AGG	0.636431	5:+55812721	None:intergenic
ACCGATGCTGCTGATTCGCG+GGG	0.642086	5:-55813825	MsaT028017.1:CDS
GGTGTTGGAAGAAGAGAACT+CGG	0.646346	5:-55813267	MsaT028017.1:CDS
AATCATTGAGAAGATGCCGC+AGG	0.648015	5:-55812914	MsaT028017.1:intron
CGGTGGTCAAGTATCTTCAG+GGG	0.659657	5:-55813401	MsaT028017.1:CDS
AGTGTTGGGATTCAAACTTG+AGG	0.668806	5:-55813328	MsaT028017.1:CDS
GTACCTGGCATACATGGTGA+AGG	0.671158	5:-55809603	MsaT028017.1:CDS
GGTTGTGGATCTTGTGCCGG+TGG	0.671700	5:-55813418	MsaT028017.1:CDS
AAATGTGAAACATTTCATAG+GGG	0.677986	5:-55809752	MsaT028017.1:CDS
GAAATTCAAAGGAAACGGGG+AGG	0.695807	5:-55813783	MsaT028017.1:CDS
GACGAAATTCAAAGGAAACG+GGG	0.704915	5:-55813786	MsaT028017.1:CDS
ACAAGTGCTTCATTCCAGTG+TGG	0.707189	5:-55813439	MsaT028017.1:CDS
GAACATCTTGATCTCCATGG+AGG	0.731836	5:+55809437	None:intergenic
GGATACCTCTCAAGAACACG+AGG	0.733931	5:+55813354	None:intergenic
GTTGGAAGAAGAGAACTCGG+AGG	0.795102	5:-55813264	MsaT028017.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	55809427	55813985	55809427	ID=MsaG028017
Chr5	mRNA	55809427	55813985	55809427	ID=MsaT028017.1;Parent=MsaG028017
Chr5	exon	55809427	55809863	55809427	ID=MsaT028017.1.exon3;Parent=MsaT028017.1
Chr5	CDS	55809427	55809863	55809427	ID=cds.MsaT028017.1;Parent=MsaT028017.1
Chr5	exon	55812701	55812863	55812701	ID=MsaT028017.1.exon2;Parent=MsaT028017.1
Chr5	CDS	55812701	55812863	55812701	ID=cds.MsaT028017.1;Parent=MsaT028017.1
Chr5	exon	55812915	55813985	55812915	ID=MsaT028017.1.exon1;Parent=MsaT028017.1
Chr5	CDS	55812915	55813985	55812915	ID=cds.MsaT028017.1;Parent=MsaT028017.1

Gene Sequence

>MsaT028017.1

ATGCCAATTCTAACATTTGGTCATTCTAAGTTAACTGCTGCTACACTAGCTCTTCAATTGCCATGTAATTGTATTAGGAAGATAAGTTTTATTACAAAGCTTCAATGTTCTGTTGCTGGTAGGACGTATAGTTATAGGACCGATGCTGCTGATTCGCGGGGATCCAAACGGGACTCTGACGAAATTCAAAGGAAACGGGGAGGGGCATCGTCGTTGTATGCCCGTCCGAGTTTATCTGAAATTAAGAAAGATAAGGCGACATTGCGTGAAATTGTTTATGAGTTCTTGCGAGGAATCGGCATTGTTCCTGATGAACTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGCGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGATATTAACAACTATCCTCTTGTATTGGGATGTAGTGTCAAGAAGAATATGGTTCCTGTGCTTGATTATCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACGCAGTTCTTGCGGAGATATCCACAAGTGCTTCATTCCAGTGTGGTTGTGGATCTTGTGCCGGTGGTCAAGTATCTTCAGGGGATGGATATCAAGCCGGATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGTTGGGATTCAAACTTGAGGGAACCATGAGTACATCTGTTGCTTATTTGATTGGAATTGGTGTTGGAAGAAGAGAACTCGGAGGTATCTTAACTAGATTCCCGGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATCTGGAAAGCTTGGGTATTCCAAGGCTAGCTATTGCTAGACTGATAGAGACACAACCTTATATTCTTGGATTCGATTTGGACGAGAAAGTGAAGCCAAACGTCAAATCCCTTGAAGAGTTTAATGTTCGGCAGACATCGCTTGCCTCTATAATTGCTCAGTATCCTGACATCATTGGAACCGACCTAGAGCCAAAGCTTGCAGATAAGAGAAGTGTGCTCAATTCTGTGCTTGATTTGGATTCTGAGGATTTCGGCTTAATCATTGAGAAGATGCCGCAGGATTGTGGGTTTTCTGTGGATCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTCGATTACTTCCAAAGTGAGATGGAAAGGCCTTTGGAAGATTTGGTTGAATTCCCAGCATTCTTCACTTATGATAAAGAGATTGTTGATCTCATCGATTATGAAGAGGGAGATGGAAGAATTCATAACATTCACTTTGCATCCATTCGCGAAACCGACGACAAATGTGAAACATTTCATAGGGGAAAGAATGTTGTTCTTTTCTTAGAGGAACGTGTTAAGGGTGTCCAATTTACGCCCTCAAAATCTATTGATGAGTGCCTTAACTTGTATGTCTTTCCGAACATTAAAGGATTAAAAAGAAAGGCACGGTACCTGGCATACATGGTGAAGGTTCTATTACTGGCCGCTGAAAAACGGATAACAGGGATGACTTTCGAAATAAGAGGCTTGAGTTGGCTGGTGAGCTGCTTGAATACGAGATCAAAGTGCACTTTCACATGCTTGGAAGCGAATGGGGAAGGCTCTGCAGAGAGACCTCCATGGAGATCAAGATGTTCGTCAAATTGA

Protein sequence

>MsaT028017.1

MPILTFGHSKLTAATLALQLPCNCIRKISFITKLQCSVAGRTYSYRTDAADSRGSKRDSDEIQRKRGGASSLYARPSLSEIKKDKATLREIVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLRRYPQVLHSSVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLDEKVKPNVKSLEEFNVRQTSLASIIAQYPDIIGTDLEPKLADKRSVLNSVLDLDSEDFGLIIEKMPQDCGFSVDQMRKMIVGCPQLLALNIDIMKLSFDYFQSEMERPLEDLVEFPAFFTYDKEIVDLIDYEEGDGRIHNIHFASIRETDDKCETFHRGKNVVLFLEERVKGVQFTPSKSIDECLNLYVFPNIKGLKRKARYLAYMVKVLLLAAEKRITGMTFEIRGLSWLVSCLNTRSKCTFTCLEANGEGSAERPPWRSRCSSN*