AlfalfaGEDB | MsaG028069

M. sativa ssp. caerulea / MsaG028069

KEGG: K20791
GO: GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	sp\|Q9FKI4\|NAA10_ARATH	36.296	135	69	4	4	127	2	130	1.63e-11	62.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	tr\|A0A6N2L4H3\|A0A6N2L4H3_SALVM	38.686	137	67	4	4	129	2	132	4.31e-11	68.2

TFs/TRs:

Gene ID	Type	Classification
MsaG028069	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000157	MsaG028069	0.804935	2.873820e-49	4.350300e-47
MsaG000281	MsaG028069	0.801486	1.475365e-48	2.062860e-46
MsaG001178	MsaG028069	0.825735	7.081830e-54	1.818022e-51
MsaG001237	MsaG028069	0.804693	3.226348e-49	4.856543e-47
MsaG001531	MsaG028069	0.802605	8.707025e-49	1.248948e-46
MsaG002013	MsaG028069	0.823182	2.805857e-53	6.717678e-51
MsaG003210	MsaG028069	0.832281	1.869800e-55	5.779915e-53
MsaG003683	MsaG028069	0.834836	4.334707e-56	1.444876e-53
MsaG004105	MsaG028069	0.805546	2.143139e-49	3.290541e-47
MsaG004373	MsaG028069	0.819854	1.633844e-52	3.579406e-50
MsaG005000	MsaG028069	0.808620	4.825715e-50	7.971156e-48
MsaG005401	MsaG028069	0.821843	5.725904e-53	1.322320e-50
MsaG005435	MsaG028069	0.805678	2.011353e-49	3.097800e-47
MsaG005438	MsaG028069	0.804977	2.816110e-49	4.267146e-47
MsaG005506	MsaG028069	0.828081	1.960041e-54	5.372043e-52
MsaG005508	MsaG028069	0.808720	4.593896e-50	7.607076e-48
MsaG005683	MsaG028069	0.819416	2.055048e-52	4.450683e-50
MsaG005705	MsaG028069	0.820854	9.661918e-53	2.173453e-50
MsaG005811	MsaG028069	0.829819	7.470240e-55	2.150749e-52
MsaG005864	MsaG028069	0.836704	1.465045e-56	5.165017e-54
MsaG006175	MsaG028069	0.840192	1.863609e-57	7.318930e-55
MsaG007145	MsaG028069	0.806120	1.625919e-49	2.530383e-47
MsaG007353	MsaG028069	0.801814	1.264468e-48	1.781267e-46
MsaG007387	MsaG028069	0.801243	1.653544e-48	2.299265e-46
MsaG007729	MsaG028069	0.812713	6.350858e-51	1.159238e-48
MsaG007833	MsaG028069	0.812342	7.649148e-51	1.383381e-48
MsaG010066	MsaG028069	0.810055	2.383696e-50	4.076033e-48
MsaG010517	MsaG028069	0.805852	1.849834e-49	2.860718e-47
MsaG010533	MsaG028069	0.834222	6.170859e-56	2.019453e-53
MsaG010835	MsaG028069	0.833061	1.199840e-55	3.794354e-53
MsaG010894	MsaG028069	0.810951	1.529571e-50	2.673356e-48
MsaG011806	MsaG028069	0.810854	1.605208e-50	2.798879e-48
MsaG013644	MsaG028069	0.810681	1.748372e-50	3.035667e-48
MsaG014184	MsaG028069	0.810781	1.664459e-50	2.897064e-48
MsaG015202	MsaG028069	0.810605	1.816199e-50	3.147580e-48
MsaG015978	MsaG028069	0.823661	2.171249e-53	5.266448e-51
MsaG016149	MsaG028069	0.813805	3.665447e-51	6.876229e-49
MsaG016685	MsaG028069	0.826609	4.398234e-54	1.156823e-51
MsaG017058	MsaG028069	0.821934	5.457760e-53	1.263425e-50
MsaG017209	MsaG028069	0.830371	5.486055e-55	1.604647e-52
MsaG017820	MsaG028069	0.818931	2.646455e-52	5.658934e-50
MsaG018248	MsaG028069	0.855374	1.274429e-61	8.345230e-59
MsaG018372	MsaG028069	0.842331	5.133620e-58	2.157569e-55
MsaG019731	MsaG028069	0.806710	1.222656e-49	1.929539e-47
MsaG020290	MsaG028069	0.814716	2.311394e-51	4.436138e-49
MsaG020580	MsaG028069	0.823004	3.087068e-53	7.355416e-51
MsaG020874	MsaG028069	0.833406	9.852819e-56	3.147714e-53
MsaG020875	MsaG028069	0.814126	3.116594e-51	5.893598e-49
MsaG021668	MsaG028069	0.810280	2.132252e-50	3.666244e-48
MsaG021863	MsaG028069	0.800808	2.027661e-48	2.792018e-46
MsaG022100	MsaG028069	0.806923	1.102908e-49	1.749236e-47
MsaG023339	MsaG028069	0.814932	2.071245e-51	3.997030e-49
MsaG023971	MsaG028069	0.806846	1.144643e-49	1.812148e-47
MsaG025484	MsaG028069	0.813398	4.500251e-51	8.356347e-49
MsaG026721	MsaG028069	0.824883	1.124291e-53	2.819137e-51
MsaG026714	MsaG028069	0.809372	3.337275e-50	5.613211e-48
MsaG028069	MsaG028457	0.821911	5.522669e-53	1.277710e-50
MsaG028069	MsaG028554	0.813559	4.151070e-51	7.739080e-49
MsaG028069	MsaG028715	0.813627	4.010454e-51	7.489670e-49
MsaG028069	MsaG028716	0.818535	3.251775e-52	6.881647e-50
MsaG028069	MsaG028811	0.824129	1.688173e-53	4.146934e-51
MsaG028069	MsaG029593	0.801283	1.622956e-48	2.258803e-46
MsaG028069	MsaG030501	0.800785	2.049474e-48	2.820636e-46
MsaG028069	MsaG030507	0.815196	1.811124e-51	3.518491e-49
MsaG028069	MsaG034827	0.831529	2.859944e-55	8.649504e-53
MsaG028069	MsaG034828	0.812290	7.847848e-51	1.417479e-48
MsaG028069	MsaG034829	0.827123	3.319808e-54	8.857791e-52
MsaG028069	MsaG036047	0.801857	1.239520e-48	1.747812e-46
MsaG028069	MsaG038016	0.812649	6.557756e-51	1.195082e-48
MsaG028069	MsaG038421	0.803385	6.017486e-49	8.787898e-47
MsaG028069	MsaG039621	0.814852	2.156928e-51	4.154041e-49
MsaG028069	MsaG040077	0.816114	1.133324e-51	2.253557e-49
MsaG028069	MsaG041116	0.825840	6.688815e-54	1.722137e-51
MsaG028069	MsaG041271	0.826181	5.556801e-54	1.444264e-51
MsaG028069	MsaG041901	0.808812	4.392393e-50	7.289100e-48
MsaG028069	MsaG043415	0.808459	5.220596e-50	8.590144e-48
MsaG028069	MsaG044384	0.838752	4.391318e-57	1.648704e-54
MsaG028069	MsaG045021	0.800389	2.465490e-48	3.362952e-46
MsaG028069	MsaG045222	0.838038	6.699010e-57	2.459763e-54
MsaG028069	MsaG045445	0.803452	5.829777e-49	8.526753e-47
MsaG028069	MsaG045487	0.814232	2.953408e-51	5.600109e-49
MsaG028069	MsaG046053	0.839882	2.242686e-57	8.722834e-55
MsaG028069	MsaG046205	0.815104	1.897365e-51	3.677376e-49
MsaG028069	MsaG046383	0.815253	1.758804e-51	3.421862e-49
MsaG028069	MsaG046556	0.828763	1.344014e-54	3.754752e-52
MsaG028069	MsaG046807	0.802672	8.437190e-49	1.212073e-46
MsaG028069	MsaG047054	0.811415	1.214619e-50	2.147184e-48
MsaG028069	MsaG000067	0.812910	5.752095e-51	1.055134e-48
MsaG028069	MsaG002744	0.831519	2.877386e-55	8.699395e-53
MsaG028069	MsaG009037	0.838455	5.236470e-57	1.947776e-54
MsaG028069	MsaG014180	0.840858	1.249731e-57	5.011802e-55
MsaG028069	MsaG020796	0.804845	3.000854e-49	4.533180e-47
MsaG028069	MsaG032410	0.809580	3.012651e-50	5.092963e-48
MsaG028069	MsaG032708	0.811953	9.286478e-51	1.663532e-48
MsaG028069	MsaG032980	0.819201	2.298123e-52	4.949272e-50
MsaG028069	MsaG032243	0.830399	5.400366e-55	1.580882e-52
MsaG028069	MsaG032845	0.809242	3.557360e-50	5.964535e-48
MsaG028069	MsaG033148	0.814960	2.042085e-51	3.943562e-49
MsaG028069	MsaG033325	0.822477	4.087876e-53	9.602348e-51
MsaG028069	MsaG034264	0.813564	4.140390e-51	7.720175e-49
MsaG028069	MsaG037384	0.800209	2.682369e-48	3.643726e-46
MsaG028069	MsaG039226	0.820243	1.332435e-52	2.949589e-50
MsaG028069	MsaG039736	0.814597	2.454995e-51	4.697619e-49
MsaG028069	MsaG035272	0.804442	3.637402e-49	5.443579e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	MtrunA17_Chr3g0090311	35.766	137	71	4	4	129	2	132	4.71e-13	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	AT5G13780.1	36.296	135	69	4	4	127	2	130	1.66e-12	62.4

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATCGTAATCCAAGGCCTTT+TGG	0.266555	5:+56539065	None:intergenic
AAACCTGTTCCAAATCCTTA+TGG	0.271438	5:+56539394	None:intergenic
CTTATCTTGCCTTTGAGTAC+TGG	0.344775	5:-56539600	MsaT028069.1:CDS
GACTGCCGCCCATAAGGATT+TGG	0.362443	5:-56539403	MsaT028069.1:CDS
CGCCCATAAGGATTTGGAAC+AGG	0.390119	5:-56539397	MsaT028069.1:intron
GAAGGAGGAGGAGGTTAAGA+AGG	0.410903	5:-56539505	MsaT028069.1:CDS
TTTATAAGCCGATGTCTTCT+CGG	0.419946	5:-56539006	MsaT028069.1:CDS
AACCTGTTCCAAATCCTTAT+GGG	0.426781	5:+56539395	None:intergenic
GCTTGTGACTGCCGCCCATA+AGG	0.446228	5:-56539409	MsaT028069.1:CDS
TTATAAGCCGATGTCTTCTC+GGG	0.463522	5:-56539005	MsaT028069.1:CDS
CTCTATTAAGAAGGAGGAGG+AGG	0.487768	5:-56539514	MsaT028069.1:CDS
GGAGGAGGAGGTTAAGAAGG+AGG	0.522170	5:-56539502	MsaT028069.1:CDS
AAGCTGGAATGTTGTACCTC+GGG	0.522913	5:+56539098	None:intergenic
CTCGCAACCTATCAGAGACT+TGG	0.530721	5:-56539444	MsaT028069.1:CDS
CACGTTGCGGTCAGGAACGG+CGG	0.539689	5:-56539564	MsaT028069.1:CDS
TTATGTCTGCTCTATTAAGA+AGG	0.559468	5:-56539523	MsaT028069.1:CDS
AGCGATACCAAGTCTCTGAT+AGG	0.565478	5:+56539437	None:intergenic
TTCATAAATATCGTAATCCA+AGG	0.565491	5:+56539057	None:intergenic
GCAAGATAAGATCATATTCG+CGG	0.579984	5:+56539613	None:intergenic
TTTCACGTTGCGGTCAGGAA+CGG	0.584188	5:-56539567	MsaT028069.1:CDS
CTGCTCTATTAAGAAGGAGG+AGG	0.589794	5:-56539517	MsaT028069.1:CDS
CGCTGAAATCAGTCACGTCG+TGG	0.599192	5:-56539469	MsaT028069.1:CDS
TGTTCATCTCCAGTACTCAA+AGG	0.610835	5:+56539591	None:intergenic
AAAGCTGGAATGTTGTACCT+CGG	0.618480	5:+56539097	None:intergenic
ACATCTCAGCGCTCGTCCCG+AGG	0.619758	5:-56539114	MsaT028069.1:CDS
TTGGTCTCCCGAGAAGACAT+CGG	0.622749	5:+56538998	None:intergenic
GGCGGCCGTCGCAATATCGT+CGG	0.625495	5:-56539546	MsaT028069.1:CDS
ACGAGCGCTGAGATGTACTC+AGG	0.636447	5:+56539121	None:intergenic
TGTCTGCTCTATTAAGAAGG+AGG	0.648646	5:-56539520	MsaT028069.1:CDS
CTGTTCCAAATCCTTATGGG+CGG	0.673914	5:+56539398	None:intergenic
CATAACCGACGATATTGCGA+CGG	0.695901	5:+56539541	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	56538994	56539688	56538994	ID=MsaG028069
Chr5	mRNA	56538994	56539688	56538994	ID=MsaT028069.1;Parent=MsaG028069
Chr5	exon	56538994	56539152	56538994	ID=MsaT028069.1.exon2;Parent=MsaT028069.1
Chr5	CDS	56538994	56539152	56538994	ID=cds.MsaT028069.1;Parent=MsaT028069.1
Chr5	exon	56539398	56539688	56539398	ID=MsaT028069.1.exon1;Parent=MsaT028069.1
Chr5	CDS	56539398	56539688	56539398	ID=cds.MsaT028069.1;Parent=MsaT028069.1

Gene Sequence

>MsaT028069.1

ATGTCGAACGTGAGCATAAGAGCTGCAACATGCAACGACATGTCTGAGCTTTGCCGCGAATATGATCTTATCTTGCCTTTGAGTACTGGAGATGAACATTTTCACGTTGCGGTCAGGAACGGCGGCCGTCGCAATATCGTCGGTTATGTCTGCTCTATTAAGAAGGAGGAGGAGGTTAAGAAGGAGGTTAAGATTTACGCTGAAATCAGTCACGTCGTGGTTCTCGCAACCTATCAGAGACTTGGTATCGCTACAAAGCTTGTGACTGCCGCCCATAAGGATTTGGAACAGAATTATCATCCTGAGTACATCTCAGCGCTCGTCCCGAGGTACAACATTCCAGCTTTCATTTTGTTCCAAAAGGCCTTGGATTACGATATTTATGAAGATGATTGTACAAAAAACAGTTATCACTTTTATAAGCCGATGTCTTCTCGGGAGACCAAATGA

Protein sequence

>MsaT028069.1

MSNVSIRAATCNDMSELCREYDLILPLSTGDEHFHVAVRNGGRRNIVGYVCSIKKEEEVKKEVKIYAEISHVVVLATYQRLGIATKLVTAAHKDLEQNYHPEYISALVPRYNIPAFILFQKALDYDIYEDDCTKNSYHFYKPMSSRETK*