AlfalfaGEDB | MsaG028069

M. sativa ssp. caerulea / MsaG028069

KEGG: K20791
GO: GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	sp\|Q9FKI4\|NAA10_ARATH	36.296	135	69	4	4	127	2	130	1.63e-11	62.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	tr\|A0A6N2L4H3\|A0A6N2L4H3_SALVM	38.686	137	67	4	4	129	2	132	4.31e-11	68.2

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028069	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000157	MsaG028069	0.804935	2.873820e-49	4.350300e-47
MsaG000281	MsaG028069	0.801486	1.475365e-48	2.062860e-46
MsaG001178	MsaG028069	0.825735	7.081830e-54	1.818022e-51
MsaG001237	MsaG028069	0.804693	3.226348e-49	4.856543e-47
MsaG001531	MsaG028069	0.802605	8.707025e-49	1.248948e-46
MsaG002013	MsaG028069	0.823182	2.805857e-53	6.717678e-51
MsaG003210	MsaG028069	0.832281	1.869800e-55	5.779915e-53
MsaG003683	MsaG028069	0.834836	4.334707e-56	1.444876e-53
MsaG004105	MsaG028069	0.805546	2.143139e-49	3.290541e-47
MsaG004373	MsaG028069	0.819854	1.633844e-52	3.579406e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	MtrunA17_Chr3g0090311	35.766	137	71	4	4	129	2	132	4.71e-13	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028069	AT5G13780.1	36.296	135	69	4	4	127	2	130	1.66e-12	62.4

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Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTTCCAAATCCTTA+TGG	0.271438	5:+56539394	None:intergenic
AAAGCTGGAATGTTGTACCT+CGG	0.618480	5:+56539097	None:intergenic
AACCTGTTCCAAATCCTTAT+GGG	0.426781	5:+56539395	None:intergenic
AAGCTGGAATGTTGTACCTC+GGG	0.522913	5:+56539098	None:intergenic
ACATCTCAGCGCTCGTCCCG+AGG	0.619758	5:-56539114	MsaT028069.1:CDS
ACGAGCGCTGAGATGTACTC+AGG	0.636447	5:+56539121	None:intergenic
AGCGATACCAAGTCTCTGAT+AGG	0.565478	5:+56539437	None:intergenic
CACGTTGCGGTCAGGAACGG+CGG	0.539689	5:-56539564	MsaT028069.1:CDS
CATAACCGACGATATTGCGA+CGG	0.695901	5:+56539541	None:intergenic
CGCCCATAAGGATTTGGAAC+AGG	0.390119	5:-56539397	MsaT028069.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	56538994	56539688	56538994	ID=MsaG028069
Chr5	mRNA	56538994	56539688	56538994	ID=MsaT028069.1;Parent=MsaG028069
Chr5	exon	56538994	56539152	56538994	ID=MsaT028069.1.exon2;Parent=MsaT028069.1
Chr5	CDS	56538994	56539152	56538994	ID=cds.MsaT028069.1;Parent=MsaT028069.1
Chr5	exon	56539398	56539688	56539398	ID=MsaT028069.1.exon1;Parent=MsaT028069.1
Chr5	CDS	56539398	56539688	56539398	ID=cds.MsaT028069.1;Parent=MsaT028069.1

Gene Sequence

>MsaT028069.1

ATGTCGAACGTGAGCATAAGAGCTGCAACATGCAACGACATGTCTGAGCTTTGCCGCGAATATGATCTTATCTTGCCTTTGAGTACTGGAGATGAACATTTTCACGTTGCGGTCAGGAACGGCGGCCGTCGCAATATCGTCGGTTATGTCTGCTCTATTAAGAAGGAGGAGGAGGTTAAGAAGGAGGTTAAGATTTACGCTGAAATCAGTCACGTCGTGGTTCTCGCAACCTATCAGAGACTTGGTATCGCTACAAAGCTTGTGACTGCCGCCCATAAGGATTTGGAACAGAATTATCATCCTGAGTACATCTCAGCGCTCGTCCCGAGGTACAACATTCCAGCTTTCATTTTGTTCCAAAAGGCCTTGGATTACGATATTTATGAAGATGATTGTACAAAAAACAGTTATCACTTTTATAAGCCGATGTCTTCTCGGGAGACCAAATGA

Protein sequence

>MsaT028069.1

MSNVSIRAATCNDMSELCREYDLILPLSTGDEHFHVAVRNGGRRNIVGYVCSIKKEEEVKKEVKIYAEISHVVVLATYQRLGIATKLVTAAHKDLEQNYHPEYISALVPRYNIPAFILFQKALDYDIYEDDCTKNSYHFYKPMSSRETK*