AlfalfaGEDB | MsaG028092

M. sativa ssp. caerulea / MsaG028092

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028092	AES98565.1	93.803	355	18	3	1	351	1	355	0.0	679

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028092	sp\|Q9FIM4\|MY119_ARATH	46.739	276	108	6	109	350	95	365	3.10e-66	218

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028092	tr\|G7K6C7\|G7K6C7_MEDTR	93.803	355	18	3	1	351	1	355	0.0	679

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028092	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028092	MtrunA17_Chr5g0429661	93.803	355	18	3	1	351	1	355	0.0	679
MsaG028092	MtrunA17_Chr4g0058991	46.667	225	104	5	26	248	121	331	2.84e-57	192
MsaG028092	MtrunA17_Chr3g0117511	64.394	132	40	1	117	248	181	305	7.57e-56	188
MsaG028092	MtrunA17_Chr3g0104501	55.249	181	59	7	11	170	5	184	3.38e-55	179
MsaG028092	MtrunA17_Chr7g0228531	50.898	167	75	5	117	282	218	378	2.72e-49	171
MsaG028092	MtrunA17_Chr7g0228481	55.906	127	53	2	117	243	218	341	2.66e-43	155
MsaG028092	MtrunA17_Chr7g0238631	62.136	103	39	0	117	219	111	213	1.49e-40	150
MsaG028092	MtrunA17_Chr3g0104491	41.841	239	76	9	169	350	17	249	1.64e-39	141
MsaG028092	MtrunA17_Chr7g0228401	44.805	154	53	4	118	246	254	400	1.88e-38	143
MsaG028092	MtrunA17_Chr3g0139671	57.282	103	44	0	117	219	83	185	2.41e-38	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028092	AT5G58850.1	46.739	276	108	6	109	350	95	365	3.15e-67	218
MsaG028092	AT5G11050.1	46.209	277	109	6	108	350	94	364	2.15e-65	213
MsaG028092	AT3G27785.1	55.682	176	74	2	76	250	145	317	1.49e-58	196
MsaG028092	AT4G18770.1	45.415	229	99	7	42	261	141	352	4.86e-58	194
MsaG028092	AT5G40360.1	52.113	142	63	1	109	250	148	284	1.23e-47	165
MsaG028092	AT3G09370.2	61.538	104	40	0	117	220	133	236	4.36e-41	150
MsaG028092	AT3G09370.1	61.538	104	40	0	117	220	128	231	4.36e-41	150
MsaG028092	AT3G09370.3	61.538	104	40	0	117	220	141	244	5.34e-41	150
MsaG028092	AT5G02320.1	61.165	103	40	0	117	219	125	227	2.11e-40	149
MsaG028092	AT5G02320.2	61.165	103	40	0	117	219	125	227	2.11e-40	149

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Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCAACATTGTGGGA+AGG	0.651290	5:-56819107	MsaT028092.1:CDS
AAATGTCAATGACCCTATGA+TGG	0.523078	5:-56819346	MsaT028092.1:CDS
AACTAAGAAAGAGACTTCCG+AGG	0.693403	5:-56819082	MsaT028092.1:CDS
AACTTCCACATTGTGCCTTA+AGG	0.380633	5:-56819148	MsaT028092.1:CDS
AAGAATGAAACTAATTTCAA+GGG	0.567984	5:-56817164	MsaT028092.1:CDS
AAGCTTGATTCTTGAGTATT+TGG	0.147400	5:+56819222	None:intergenic
AAGTGTTGCATGAGAGGAAG+AGG	0.420763	5:+56817064	None:intergenic
AATATCCTTAAGGCACAATG+TGG	0.654859	5:+56819143	None:intergenic
AATATGTTCCCTTACTCTTA+TGG	0.232467	5:-56819267	MsaT028092.1:CDS
ACATATTCAACAATTGAGAG+AGG	0.676560	5:+56816811	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	56816809	56819427	56816809	ID=MsaG028092
Chr5	mRNA	56816809	56819427	56816809	ID=MsaT028092.1;Parent=MsaG028092
Chr5	exon	56816809	56817354	56816809	ID=MsaT028092.1.exon3;Parent=MsaT028092.1
Chr5	CDS	56816809	56817354	56816809	ID=cds.MsaT028092.1;Parent=MsaT028092.1
Chr5	exon	56818730	56818856	56818730	ID=MsaT028092.1.exon2;Parent=MsaT028092.1
Chr5	CDS	56818730	56818856	56818730	ID=cds.MsaT028092.1;Parent=MsaT028092.1
Chr5	exon	56819045	56819427	56819045	ID=MsaT028092.1.exon1;Parent=MsaT028092.1
Chr5	CDS	56819045	56819427	56819045	ID=cds.MsaT028092.1;Parent=MsaT028092.1

Gene Sequence

>MsaT028092.1

ATGGTAAGAGGAGAAAATCATGGGGTCAATGGCGTTAAAGTCTTTGGCAATGAAAATATAAATGTCAATGACCCTATGATGGATAGATTCTTATGGGGACAAATGATTCACTACCCTAACCATCAACAAAACAATGCAAATATGTTCCCTTACTCTTATGGTTCCAACCATGAGTTTATGTGGCCAAATACTCAAGAATCAAGCTTTGTTGTTGATGGTGTCTTAGCAAATGAAGAGGCGTGGACTAACTTCAACCAAACTTCCACATTGTGCCTTAAGGATATTCAAGGTTATGGTGAAAACACCAACATTGTGGGAAGGATAACTAAGAAAGAGACTTCCGAGGTCTTGATCAAAGGACAGTGGACAAACGAAGAAGACAGGAAACTGATAAAGTTGGTTAAGCAATATGGCGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAAGATATTAGTAGCTACACATGCCAAAATTGGAAACCGTTGGGCTGAGATAGCAAAGAAGATTCCAGGAAGAACTGAAAATGCCATAAAAAATCATTGGAATGCCACTAAAAGGAGACAAAATTCAAGAAGAAAGAACAAGAAGAATGAAACTAATTTCAAGGGATCAAAACCTAAGTCCTATATACTTGAAAACTATATCAAAACCAACACCTCCATCACTACAAAAATTACCAACATACCCTCTTCCTCTCATGCAACACTTTCCTTAAACCTTGAAGAAAATCAATCAAATCCTTTTTTCAATGAATTACCTTCTGAATCTTTTTCCAATGAATTACACTTCATACAACAAATTTTGTTGGATGATAATAATCAAAATGTTGTTGATGATGTGAATGAGAGTGAGCTTGTTCATTCAATCCAATGCCCAAATTACAACATGCATTTGGATACTCCTACCTCTATGAATAATTTCCTTCCCTATGATCTTTACCTCTCTCAATTGTTGAATATGTAG

Protein sequence

>MsaT028092.1

MVRGENHGVNGVKVFGNENINVNDPMMDRFLWGQMIHYPNHQQNNANMFPYSYGSNHEFMWPNTQESSFVVDGVLANEEAWTNFNQTSTLCLKDIQGYGENTNIVGRITKKETSEVLIKGQWTNEEDRKLIKLVKQYGERKWAQIAEKLEGRVGKQCRERWHNHLRPDIKKDSWSEEEEKILVATHAKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKNETNFKGSKPKSYILENYIKTNTSITTKITNIPSSSHATLSLNLEENQSNPFFNELPSESFSNELHFIQQILLDDNNQNVVDDVNESELVHSIQCPNYNMHLDTPTSMNNFLPYDLYLSQLLNM*