AlfalfaGEDB | MsaG028229

M. sativa ssp. caerulea / MsaG028229

KEGG: -
GO: -
PFAM: PF00505.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028229	AES99377.1	91.667	72	6	0	1	72	1	72	1.98e-40	142

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028229	sp\|Q1JPP8\|SMR4_ARATH	50.000	60	28	1	8	67	12	69	3.99e-12	62.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028229	tr\|G7KBS4\|G7KBS4_MEDTR	91.667	72	6	0	1	72	1	72	9.47e-41	142

TFs/TRs:

Gene ID	Type	Classification
MsaG028229	TF	C2C2-YABBY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000346	MsaG028229	0.809254	3.534898e-50	5.928741e-48
MsaG000431	MsaG028229	0.853309	5.001396e-61	3.042114e-58
MsaG001237	MsaG028229	0.821661	6.306545e-53	1.449399e-50
MsaG001248	MsaG028229	0.809287	3.478170e-50	5.838166e-48
MsaG001531	MsaG028229	0.814435	2.666090e-51	5.081039e-49
MsaG001727	MsaG028229	0.815516	1.538200e-51	3.012571e-49
MsaG002273	MsaG028229	0.808844	4.322882e-50	7.179605e-48
MsaG003394	MsaG028229	0.820721	1.036089e-52	2.322531e-50
MsaG003466	MsaG028229	0.818303	3.667699e-52	7.715224e-50
MsaG003468	MsaG028229	0.813966	3.379804e-51	6.365888e-49
MsaG004108	MsaG028229	0.814503	2.574663e-51	4.915128e-49
MsaG004373	MsaG028229	0.813395	4.507153e-51	8.368448e-49
MsaG005435	MsaG028229	0.808151	6.067152e-50	9.909413e-48
MsaG005438	MsaG028229	0.811794	1.005669e-50	1.794401e-48
MsaG006074	MsaG028229	0.800379	2.477160e-48	3.378079e-46
MsaG006777	MsaG028229	0.800215	2.674543e-48	3.633621e-46
MsaG007387	MsaG028229	0.809713	2.821732e-50	4.785367e-48
MsaG008229	MsaG028229	0.813606	4.053436e-51	7.565918e-49
MsaG008996	MsaG028229	0.801940	1.191981e-48	1.683937e-46
MsaG010394	MsaG028229	0.811940	9.350695e-51	1.674479e-48
MsaG011080	MsaG028229	0.804421	3.674135e-49	5.495977e-47
MsaG011081	MsaG028229	0.817755	4.870838e-52	1.010240e-49
MsaG011275	MsaG028229	0.805949	1.765094e-49	2.735931e-47
MsaG012422	MsaG028229	0.803539	5.593302e-49	8.197580e-47
MsaG013993	MsaG028229	0.821119	8.399703e-53	1.902917e-50
MsaG014422	MsaG028229	0.803499	5.701878e-49	8.348614e-47
MsaG014439	MsaG028229	0.806221	1.548684e-49	2.416049e-47
MsaG014953	MsaG028229	0.827643	2.495292e-54	6.755683e-52
MsaG015705	MsaG028229	0.822202	4.731919e-53	1.103312e-50
MsaG016006	MsaG028229	0.825107	9.959419e-54	2.512684e-51
MsaG016149	MsaG028229	0.844572	1.302313e-58	5.883873e-56
MsaG016115	MsaG028229	0.806150	1.602070e-49	2.495080e-47
MsaG017329	MsaG028229	0.802310	1.001253e-48	1.426510e-46
MsaG017337	MsaG028229	0.800396	2.458298e-48	3.353625e-46
MsaG017778	MsaG028229	0.801546	1.434502e-48	2.008478e-46
MsaG018447	MsaG028229	0.813455	4.373094e-51	8.131863e-49
MsaG019977	MsaG028229	0.821166	8.193274e-53	1.858532e-50
MsaG020874	MsaG028229	0.813224	4.913249e-51	9.083581e-49
MsaG020875	MsaG028229	0.810361	2.048732e-50	3.529702e-48
MsaG021765	MsaG028229	0.834524	5.189389e-56	1.713732e-53
MsaG023339	MsaG028229	0.813199	4.975897e-51	9.193383e-49
MsaG023578	MsaG028229	0.802951	7.391902e-49	1.068723e-46
MsaG024010	MsaG028229	0.819151	2.359640e-52	5.074981e-50
MsaG026985	MsaG028229	0.826466	4.755239e-54	1.245851e-51
MsaG027211	MsaG028229	0.824018	1.792751e-53	4.390562e-51
MsaG028163	MsaG028229	0.833840	7.684704e-56	2.486377e-53
MsaG028229	MsaG028811	0.803643	5.323893e-49	7.821213e-47
MsaG028229	MsaG029204	0.835710	2.614454e-56	8.945257e-54
MsaG028229	MsaG029461	0.811873	9.664971e-51	1.727904e-48
MsaG028229	MsaG029593	0.803976	4.543035e-49	6.725952e-47
MsaG028229	MsaG030084	0.812645	6.570589e-51	1.197309e-48
MsaG028229	MsaG032221	0.806274	1.509172e-49	2.357407e-47
MsaG028229	MsaG033766	0.824103	1.712606e-53	4.203904e-51
MsaG028229	MsaG034049	0.802462	9.318475e-49	1.332251e-46
MsaG028229	MsaG035511	0.802668	8.451859e-49	1.214082e-46
MsaG028229	MsaG040077	0.816733	8.251430e-52	1.666934e-49
MsaG028229	MsaG040980	0.808673	4.701487e-50	7.776268e-48
MsaG028229	MsaG041039	0.813588	4.089717e-51	7.630324e-49
MsaG028229	MsaG041513	0.805530	2.159813e-49	3.314920e-47
MsaG028229	MsaG042968	0.804114	4.254260e-49	6.318756e-47
MsaG028229	MsaG043663	0.821056	8.683105e-53	1.963902e-50
MsaG028229	MsaG044693	0.808075	6.298985e-50	1.026916e-47
MsaG028229	MsaG045021	0.807674	7.656180e-50	1.236211e-47
MsaG028229	MsaG045339	0.828593	1.477052e-54	4.107027e-52
MsaG028229	MsaG045371	0.832726	1.452184e-55	4.547583e-53
MsaG028229	MsaG045380	0.817815	4.723783e-52	9.812779e-50
MsaG028229	MsaG045376	0.802403	9.580087e-49	1.367847e-46
MsaG028229	MsaG045641	0.804977	2.816960e-49	4.268361e-47
MsaG028229	MsaG046053	0.808566	4.954066e-50	8.172624e-48
MsaG028229	MsaG046205	0.809220	3.595554e-50	6.025408e-48
MsaG028229	MsaG046383	0.823070	2.978722e-53	7.110091e-51
MsaG028229	MsaG046488	0.803751	5.058609e-49	7.450211e-47
MsaG028229	MsaG046816	0.822053	5.123595e-53	1.189865e-50
MsaG028229	MsaG047054	0.800288	2.585168e-48	3.517998e-46
MsaG028229	MsaG007590	0.852247	1.002508e-60	5.874124e-58
MsaG028229	MsaG008770	0.814115	3.133624e-51	5.924222e-49
MsaG028229	MsaG010026	0.807423	8.649537e-50	1.388241e-47
MsaG028229	MsaG011742	0.805012	2.769145e-49	4.199455e-47
MsaG028229	MsaG013014	0.811291	1.292046e-50	2.277137e-48
MsaG028229	MsaG020796	0.800380	2.476732e-48	3.377539e-46
MsaG028229	MsaG018864	0.806881	1.125300e-49	1.783030e-47
MsaG028229	MsaG031025	0.800072	2.859266e-48	3.872150e-46
MsaG028229	MsaG037384	0.839265	3.240328e-57	1.236100e-54
MsaG028229	MsaG035677	0.811928	9.407606e-51	1.684165e-48
MsaG028229	MsaG036984	0.827032	3.490290e-54	9.288763e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028229	MtrunA17_Chr5g0435411	91.667	72	6	0	1	72	1	72	1.82e-44	142
MsaG028229	MtrunA17_Chr5g0435401	75.556	90	22	0	93	182	177	266	1.39e-42	147
MsaG028229	MtrunA17_Chr5g0435401	63.636	88	29	2	104	190	264	349	1.19e-24	99.4
MsaG028229	MtrunA17_Chr5g0435431	87.500	72	9	0	1	72	1	72	9.05e-42	135
MsaG028229	MtrunA17_Chr1g0192841	58.261	115	37	2	87	190	38	152	1.42e-31	114

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028229	AT5G02220.1	50.000	60	28	1	8	67	12	69	4.05e-13	62.4

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAGATTCCCTTTCCTTTAT+AGG	0.104103	5:+59306596	None:intergenic
TTTGAAAATGGTTATGAAAT+TGG	0.137150	5:-59306792	None:intergenic
CAGACTCTTCAGTGCTCTTT+TGG	0.248679	5:+59304694	None:intergenic
TTATATCCACTCTGACCTAT+TGG	0.347768	5:+59304995	None:intergenic
ATCCGACAACCGCTGTGTTT+TGG	0.358584	5:+59306746	None:intergenic
AAAGGAAAGCAAGGAGATAA+AGG	0.375471	5:-59304739	MsaT028229.1:CDS
TTCTTACTTAAAGCAGGAGT+TGG	0.403219	5:-59305088	MsaT028229.1:CDS
GTGCTTATGCTGCAATACTT+TGG	0.423903	5:-59305112	MsaT028229.1:CDS
TGGAGATTGAAGAAGGTTGC+CGG	0.426728	5:-59306772	MsaT028229.1:CDS
GTTGTCAGACAAGGAGAAAC+AGG	0.430794	5:-59304876	MsaT028229.1:intron
ATGAAATTGGAGATTGAAGA+AGG	0.432769	5:-59306779	MsaT028229.1:CDS
TTTGGATTCTTACTTAAAGC+AGG	0.455789	5:-59305094	MsaT028229.1:CDS
AAACGGAGACGTGCTCCAAT+AGG	0.460049	5:-59305010	MsaT028229.1:CDS
TTTCATGTAGCCATATGAAA+AGG	0.472708	5:-59304757	MsaT028229.1:intron
TCGTCTAAAAGCTGATCATC+AGG	0.483966	5:-59304948	MsaT028229.1:CDS
GGTTTATTCAACGAAGAAGA+AGG	0.495785	5:-59306678	MsaT028229.1:CDS
TTCTTCGTTGAATAAACCAC+CGG	0.508962	5:+59306683	None:intergenic
CACCAAAACACAGCGGTTGT+CGG	0.521171	5:-59306748	MsaT028229.1:CDS
ATAACAAAGAAAAGAAGAAA+CGG	0.522686	5:-59305027	MsaT028229.1:CDS
GACGAGCACATTCCTGCTTG+AGG	0.523607	5:+59304966	None:intergenic
TAGACATGGCTATTGATGCT+TGG	0.537672	5:-59304904	MsaT028229.1:CDS
GAAGAAGAAGGCCCCACCGA+AGG	0.545060	5:-59306666	MsaT028229.1:CDS
GGATTGAAGTAACCATCCTT+CGG	0.555826	5:+59306650	None:intergenic
GCCATATGAAAAGGAAAGCA+AGG	0.558682	5:-59304748	MsaT028229.1:CDS
GCCCGCGACTATGTGTCCCT+CGG	0.570147	5:-59306720	MsaT028229.1:CDS
TGAAGTAACCATCCTTCGGT+GGG	0.570885	5:+59306654	None:intergenic
GCCGAGGGACACATAGTCGC+GGG	0.578000	5:+59306719	None:intergenic
AAGAAGGCCCCACCGAAGGA+TGG	0.585344	5:-59306662	MsaT028229.1:CDS
ATATAATATATTCCTCAAGC+AGG	0.589592	5:-59304978	MsaT028229.1:CDS
GCTGATCATCAGGACATATG+TGG	0.590919	5:-59304938	MsaT028229.1:CDS
TTGAAGTAACCATCCTTCGG+TGG	0.600524	5:+59306653	None:intergenic
TGGCAGAGAAATTGTAGACA+TGG	0.605105	5:-59304918	MsaT028229.1:CDS
TGCCGAGGGACACATAGTCG+CGG	0.615823	5:+59306718	None:intergenic
AAAATAAGCTCCAAATCAGG+GGG	0.654554	5:+59306629	None:intergenic
TTGGAACAAGTTGTCAGACA+AGG	0.660817	5:-59304885	MsaT028229.1:CDS
AGTAGCTCGTGTGAATTCAG+AGG	0.669108	5:-59305134	MsaT028229.1:CDS
GAAGTAACCATCCTTCGGTG+GGG	0.675290	5:+59306655	None:intergenic
CGTGCTCCAATAGGTCAGAG+TGG	0.690376	5:-59305001	MsaT028229.1:CDS
GAGGGACACATAGTCGCGGG+CGG	0.723461	5:+59306722	None:intergenic
TGCCGGACACCAAAACACAG+CGG	0.804931	5:-59306755	MsaT028229.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	59304689	59306807	59304689	ID=MsaG028229
Chr5	mRNA	59304689	59306807	59304689	ID=MsaT028229.1;Parent=MsaG028229
Chr5	exon	59304689	59304769	59304689	ID=MsaT028229.1.exon3;Parent=MsaT028229.1
Chr5	CDS	59304689	59304769	59304689	ID=cds.MsaT028229.1;Parent=MsaT028229.1
Chr5	exon	59304877	59305162	59304877	ID=MsaT028229.1.exon2;Parent=MsaT028229.1
Chr5	CDS	59304877	59305162	59304877	ID=cds.MsaT028229.1;Parent=MsaT028229.1
Chr5	exon	59306596	59306807	59306596	ID=MsaT028229.1.exon1;Parent=MsaT028229.1
Chr5	CDS	59306596	59306807	59306596	ID=cds.MsaT028229.1;Parent=MsaT028229.1

Gene Sequence

>MsaT028229.1

ATGGTTATGAAATTGGAGATTGAAGAAGGTTGCCGGACACCAAAACACAGCGGTTGTCGGATACCGCCCGCGACTATGTGTCCCTCGGCACCGAAAAAGAAGCCGGTGGTTTATTCAACGAAGAAGAAGGCCCCACCGAAGGATGGTTACTTCAATCCCCCTGATTTGGAGCTTATTTTTAGAGTTTTGCCTATAAAGGAAAGGGAATCTAAATTAAAAGTAGCTCGTGTGAATTCAGAGGTGCTTATGCTGCAATACTTTGGATTCTTACTTAAAGCAGGAGTTGGATATCAAGAACATCAAGTGTTTCAACAAGCACCCACAAATAACAAAGAAAAGAAGAAACGGAGACGTGCTCCAATAGGTCAGAGTGGATATAATATATTCCTCAAGCAGGAATGTGCTCGTCTAAAAGCTGATCATCAGGACATATGTGGCAGAGAAATTGTAGACATGGCTATTGATGCTTGGAACAAGTTGTCAGACAAGGAGAAACAGCCATATGAAAAGGAAAGCAAGGAGATAAAGGAAAAAATTAAAGAAACAATGATCCAAAAGAGCACTGAAGAGTCTGTGTAA

Protein sequence

>MsaT028229.1

MVMKLEIEEGCRTPKHSGCRIPPATMCPSAPKKKPVVYSTKKKAPPKDGYFNPPDLELIFRVLPIKERESKLKVARVNSEVLMLQYFGFLLKAGVGYQEHQVFQQAPTNNKEKKKRRRAPIGQSGYNIFLKQECARLKADHQDICGREIVDMAIDAWNKLSDKEKQPYEKESKEIKEKIKETMIQKSTEESV*