AlfalfaGEDB | MsaG028230

M. sativa ssp. caerulea / MsaG028230

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028230	XP_003616418.1	85.238	420	33	5	1	400	1	411	0.0	712

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028230	tr\|G7KBS3\|G7KBS3_MEDTR	85.238	420	33	5	1	400	1	411	0.0	712

TFs/TRs:

Gene ID	Type	Classification
MsaG028230	TR	ARID

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000143	MsaG028230	0.869577	5.662651e-66	6.446757e-63
MsaG001363	MsaG028230	0.807252	9.399544e-50	1.502432e-47
MsaG002050	MsaG028230	0.841246	9.899544e-58	4.019195e-55
MsaG002069	MsaG028230	0.860770	3.225641e-63	2.582964e-60
MsaG002678	MsaG028230	0.849589	5.578588e-60	2.981701e-57
MsaG003726	MsaG028230	0.915617	1.186124e-84	1.632191e-80
MsaG003997	MsaG028230	0.840735	1.346238e-57	5.377770e-55
MsaG004047	MsaG028230	0.836808	1.379233e-56	4.877551e-54
MsaG004422	MsaG028230	0.817537	5.452337e-52	1.124519e-49
MsaG004528	MsaG028230	0.878453	5.820149e-69	9.778424e-66
MsaG005423	MsaG028230	0.805416	2.281109e-49	3.491819e-47
MsaG005451	MsaG028230	0.814080	3.189817e-51	6.025161e-49
MsaG006267	MsaG028230	0.814613	2.435504e-51	4.662152e-49
MsaG007137	MsaG028230	0.833353	1.015283e-55	3.238401e-53
MsaG007237	MsaG028230	0.829223	1.040899e-54	2.945863e-52
MsaG007571	MsaG028230	0.822321	4.441838e-53	1.039021e-50
MsaG008646	MsaG028230	0.825801	6.834078e-54	1.757588e-51
MsaG009078	MsaG028230	0.807878	6.932110e-50	1.124843e-47
MsaG011104	MsaG028230	0.832923	1.297899e-55	4.087947e-53
MsaG011117	MsaG028230	0.815935	1.241980e-51	2.458413e-49
MsaG012469	MsaG028230	0.802280	1.015189e-48	1.445354e-46
MsaG017440	MsaG028230	0.809194	3.641643e-50	6.098849e-48
MsaG017530	MsaG028230	0.813084	5.271530e-51	9.711794e-49
MsaG018500	MsaG028230	0.848315	1.254821e-59	6.421541e-57
MsaG018527	MsaG028230	0.814226	2.963256e-51	5.617792e-49
MsaG018582	MsaG028230	0.805089	2.668761e-49	4.054416e-47
MsaG018652	MsaG028230	0.812520	6.993744e-51	1.270510e-48
MsaG018749	MsaG028230	0.810377	2.032808e-50	3.503553e-48
MsaG019193	MsaG028230	0.800060	2.874576e-48	3.891891e-46
MsaG019804	MsaG028230	0.845310	8.249893e-59	3.818835e-56
MsaG021588	MsaG028230	0.864787	1.888142e-64	1.768746e-61
MsaG023413	MsaG028230	0.808656	4.739732e-50	7.836232e-48
MsaG027083	MsaG028230	0.802495	9.173777e-49	1.312549e-46
MsaG027864	MsaG028230	0.811456	1.189836e-50	2.105505e-48
MsaG028106	MsaG028230	0.828521	1.536988e-54	4.265133e-52
MsaG028149	MsaG028230	0.871799	1.062019e-66	1.328564e-63
MsaG028230	MsaG028276	0.825480	8.134584e-54	2.073482e-51
MsaG028230	MsaG028814	0.842259	5.364574e-58	2.249234e-55
MsaG028230	MsaG029072	0.819982	1.527727e-52	3.358449e-50
MsaG028230	MsaG029414	0.879751	2.034342e-69	3.629252e-66
MsaG028230	MsaG030549	0.827322	2.975566e-54	7.983851e-52
MsaG028230	MsaG034179	0.879706	2.109783e-69	3.756420e-66
MsaG028230	MsaG034330	0.831072	3.701521e-55	1.104618e-52
MsaG028230	MsaG035200	0.805378	2.323489e-49	3.553602e-47
MsaG028230	MsaG036126	0.817151	6.652845e-52	1.358597e-49
MsaG028230	MsaG042126	0.811690	1.059043e-50	1.884820e-48
MsaG028230	MsaG043755	0.831072	3.701521e-55	1.104618e-52
MsaG028230	MsaG045385	0.860968	2.810331e-63	2.266881e-60
MsaG028230	MsaG046943	0.808613	4.842427e-50	7.997312e-48
MsaG028230	MsaG047066	0.815998	1.202845e-51	2.384708e-49
MsaG028230	MsaG001975	0.807976	6.607550e-50	1.074689e-47
MsaG028230	MsaG007339	0.835599	2.787586e-56	9.506401e-54
MsaG028230	MsaG008209	0.803919	4.668229e-49	6.902096e-47
MsaG028230	MsaG011732	0.807473	8.442536e-50	1.356620e-47
MsaG028230	MsaG027609	0.808769	4.486619e-50	7.437784e-48
MsaG028230	MsaG031976	0.848254	1.304517e-59	6.662529e-57
MsaG028230	MsaG030550	0.805069	2.695042e-49	4.092377e-47
MsaG028230	MsaG032953	0.802384	9.668077e-49	1.379773e-46
MsaG028230	MsaG036002	0.839701	2.498643e-57	9.663129e-55

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028230	MtrunA17_Chr5g0435401	85.238	420	33	5	1	400	1	411	0.0	712
MsaG028230	MtrunA17_Chr5g0445971	69.504	141	35	2	43	183	34	166	3.16e-57	185
MsaG028230	MtrunA17_Chr1g0192841	40.092	217	79	2	185	399	74	241	2.25e-43	151

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAGATCTTCAGTGCTCTTT+TGG	0.157665	5:+59309940	None:intergenic
CACTAGTTTATCTCAATTAA+TGG	0.164628	5:-59311284	MsaT028230.1:CDS
ATTCAAATCACCTGGGAAAA+AGG	0.184616	5:+59309782	None:intergenic
AAAGCTGATCATCAGTTTAA+AGG	0.190474	5:-59310184	MsaT028230.1:CDS
CCAGTTGCAGTTTGAGTTGC+AGG	0.228640	5:+59311512	None:intergenic
TCGTAAGCTCACTGAGCTTT+TGG	0.297529	5:-59312607	MsaT028230.1:CDS
CCTCTATCAAACTACTCTTT+TGG	0.354206	5:-59309861	MsaT028230.1:CDS
TTATATCCACTCTGTCCTAT+TGG	0.357025	5:+59310576	None:intergenic
AGAGGAAAGCATGAAGATAA+AGG	0.358251	5:-59309985	MsaT028230.1:CDS
CGTTCGTTAGATTTGCCAAC+TGG	0.361646	5:-59309753	MsaT028230.1:CDS
CTCTCAGTGAGGATATAATA+TGG	0.364315	5:+59312636	None:intergenic
AGTTGTTTCTGCTCTAAAAC+TGG	0.365684	5:-59311624	MsaT028230.1:CDS
TTCATGCTTTCCTCTTCATA+TGG	0.373376	5:+59309993	None:intergenic
TTCACGCTTGCCTCTTCATA+TGG	0.385956	5:+59310328	None:intergenic
AGGTTGATCAAGAAAAGAAA+TGG	0.402611	5:-59311652	MsaT028230.1:CDS
AGAGGCAAGCGTGAAGATAA+AGG	0.407513	5:-59310320	MsaT028230.1:CDS
GTTGTCAGACAAGGAGAAAC+AGG	0.408256	5:-59310457	MsaT028230.1:intron
TTAATTTCATTAATGGAAGA+AGG	0.420089	5:-59312756	None:intergenic
GACTACTCTAGTCAAATTAC+AGG	0.434649	5:-59311223	MsaT028230.1:intron
CCTGCAACTCAAACTGCAAC+TGG	0.435997	5:-59311512	MsaT028230.1:CDS
CCAAAAGAGTAGTTTGATAG+AGG	0.436540	5:+59309861	None:intergenic
TCGTGACCTCCAAGTAAAAC+AGG	0.439872	5:+59312057	None:intergenic
CGATAATCATTCAAATCACC+TGG	0.440231	5:+59309774	None:intergenic
TTGAGACATTGTACTTCTAC+AGG	0.444314	5:-59311538	MsaT028230.1:CDS
ACTGCAACTGGCAGCAATAC+AGG	0.446573	5:-59311500	MsaT028230.1:intron
AGGAAAGGAATTAGTAGTGA+TGG	0.453771	5:-59312736	MsaT028230.1:CDS
AGAACAAAGAAAAGAAGAAA+CGG	0.457756	5:-59310608	MsaT028230.1:intron
TACTTGGAGGTCACGAAAAG+AGG	0.458176	5:-59312050	MsaT028230.1:CDS
TAGTAGTCACCACACACAAT+AGG	0.458403	5:+59309900	None:intergenic
AAACGGAGAGGTGCTCCAAT+AGG	0.474962	5:-59310591	MsaT028230.1:CDS
TTCATTAATGGAAGAAGGAA+AGG	0.479210	5:-59312751	None:intergenic
TATGCACTCTTCTGTCCCCT+TGG	0.481011	5:+59310241	None:intergenic
TTCATCAATGGAAGAAGCAA+AGG	0.491657	5:-59312679	MsaT028230.1:CDS
GGTTGATCAAGAAAAGAAAT+GGG	0.491923	5:-59311651	MsaT028230.1:CDS
CTTTATAAGGTCCAGTTGAA+AGG	0.507012	5:-59311321	MsaT028230.1:intron
AGAAGCAAAGGAATTAGAGA+TGG	0.514965	5:-59312667	MsaT028230.1:CDS
AGTAAAACAGGTACAAGTCA+AGG	0.532503	5:+59312069	None:intergenic
AAATCACGGCTATTGATGCT+TGG	0.536227	5:-59310153	MsaT028230.1:CDS
TAGAGATGGCTATTGATGCT+TGG	0.538363	5:-59310485	MsaT028230.1:CDS
TCGACTTAAAGCTTATCATC+AGG	0.545141	5:-59310529	MsaT028230.1:CDS
CGACAACAAGTATAGTCACT+CGG	0.548231	5:+59309725	None:intergenic
GTCTAGCGCATTCATGCTTG+AGG	0.557923	5:+59310209	None:intergenic
GTTCGTTAGATTTGCCAACT+GGG	0.558967	5:-59309752	MsaT028230.1:CDS
AACATGAGATTGAATCCAGA+AGG	0.564550	5:+59312582	None:intergenic
GTTTCTGCTCTAAAACTGGA+AGG	0.575106	5:-59311620	MsaT028230.1:CDS
TTTCATGTAGCCATATGAAG+AGG	0.580743	5:-59310338	MsaT028230.1:intron
AGTCACTCGGGTTCCCCAGT+TGG	0.582592	5:+59309738	None:intergenic
ATATAATATATTCCTCAAGC+AGG	0.589592	5:-59310559	MsaT028230.1:CDS
GTCGAGCACACTCCTGCTTG+AGG	0.592986	5:+59310547	None:intergenic
AAAGAAAAGAAGAAACATAG+AGG	0.596397	5:-59310268	MsaT028230.1:CDS
GAAACATAGAGGTGTTCCAA+GGG	0.597227	5:-59310257	MsaT028230.1:CDS
AGAAACATAGAGGTGTTCCA+AGG	0.610697	5:-59310258	MsaT028230.1:CDS
GTAAAACAGGTACAAGTCAA+GGG	0.610799	5:+59312070	None:intergenic
TTTCATGTAGCCATATGAAG+AGG	0.611306	5:-59310003	MsaT028230.1:intron
TTCGTTAGATTTGCCAACTG+GGG	0.615840	5:-59309751	MsaT028230.1:CDS
GCTTATCATCAGGACGTAGG+TGG	0.622815	5:-59310519	MsaT028230.1:CDS
GGAATTAGTAGTGATGGAGA+TGG	0.631774	5:-59312730	MsaT028230.1:CDS
GACAACAAGTATAGTCACTC+GGG	0.642555	5:+59309726	None:intergenic
TTGGAGGTCACGAAAAGAGG+AGG	0.644365	5:-59312047	MsaT028230.1:CDS
GATAATCATTCAAATCACCT+GGG	0.650646	5:+59309775	None:intergenic
GGACGAGCAAGATTATCAGA+AGG	0.655330	5:-59311263	MsaT028230.1:CDS
TTGGAATAAGTTGTCAGACA+AGG	0.660735	5:-59310466	MsaT028230.1:CDS
AAAGCTCAGTGAGCTTACGA+TGG	0.661623	5:+59312610	None:intergenic
ACATGAGATTGAATCCAGAA+GGG	0.670630	5:+59312583	None:intergenic
AAAGAAAAGAAGAAACGGAG+AGG	0.672313	5:-59310603	MsaT028230.1:intron
AATTTGACTAGAGTAGTCCT+CGG	0.673968	5:+59311228	None:intergenic
AAAGCTTATCATCAGGACGT+AGG	0.684875	5:-59310522	MsaT028230.1:CDS
GGTGCTCCAATAGGACAGAG+TGG	0.688534	5:-59310582	MsaT028230.1:CDS
CATTAATTGAGATAAACTAG+TGG	0.690114	5:+59311285	None:intergenic
GAAGGCAGCAAAGATATCCG+AGG	0.700751	5:-59311245	MsaT028230.1:CDS
GAAAAGAGGAGGTTATCACC+AGG	0.701758	5:-59312036	MsaT028230.1:intron
GTTGATCAAGAAAAGAAATG+GGG	0.707030	5:-59311650	MsaT028230.1:CDS
AAACATAGAGGTGTTCCAAG+GGG	0.716007	5:-59310256	MsaT028230.1:CDS
TACGATGGAAGCTCTCAGTG+AGG	0.727693	5:+59312625	None:intergenic
GAAGAGAGACCTATTGTGTG+TGG	0.729317	5:-59309909	MsaT028230.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	59309740	59312766	59309740	ID=MsaG028230
Chr5	mRNA	59309740	59312766	59309740	ID=MsaT028230.1;Parent=MsaG028230
Chr5	exon	59309740	59310015	59309740	ID=MsaT028230.1.exon7;Parent=MsaT028230.1
Chr5	CDS	59309740	59310015	59309740	ID=cds.MsaT028230.1;Parent=MsaT028230.1
Chr5	exon	59310126	59310350	59310126	ID=MsaT028230.1.exon6;Parent=MsaT028230.1
Chr5	CDS	59310126	59310350	59310126	ID=cds.MsaT028230.1;Parent=MsaT028230.1
Chr5	exon	59310458	59310621	59310458	ID=MsaT028230.1.exon5;Parent=MsaT028230.1
Chr5	CDS	59310458	59310621	59310458	ID=cds.MsaT028230.1;Parent=MsaT028230.1
Chr5	exon	59311224	59311334	59311224	ID=MsaT028230.1.exon4;Parent=MsaT028230.1
Chr5	CDS	59311224	59311334	59311224	ID=cds.MsaT028230.1;Parent=MsaT028230.1
Chr5	exon	59311501	59311672	59311501	ID=MsaT028230.1.exon3;Parent=MsaT028230.1
Chr5	CDS	59311501	59311672	59311501	ID=cds.MsaT028230.1;Parent=MsaT028230.1
Chr5	exon	59312037	59312112	59312037	ID=MsaT028230.1.exon2;Parent=MsaT028230.1
Chr5	CDS	59312037	59312112	59312037	ID=cds.MsaT028230.1;Parent=MsaT028230.1
Chr5	exon	59312585	59312766	59312585	ID=MsaT028230.1.exon1;Parent=MsaT028230.1
Chr5	CDS	59312585	59312766	59312585	ID=cds.MsaT028230.1;Parent=MsaT028230.1

Gene Sequence

>MsaT028230.1

ATGGAAGAAGGAAAGGAATTAGTAGTGATGGAGATGGTTCCTTATGAAAATGAAAATGAGAATTTTTCATCAATGGAAGAAGCAAAGGAATTAGAGATGGAGATGATTCCATATTATATCCTCACTGAGAGCTTCCATCGTAAGCTCACTGAGCTTTTGGACCCTTCTGGATTCAATCTCATATTTGATGTTCGAAAAACATCCCTTGACTTGTACCTGTTTTACTTGGAGGTCACGAAAAGAGGAGGTTATCACCAGGTTGATCAAGAAAAGAAATGGGGTGAAGTTGTTTCTGCTCTAAAACTGGAAGGAAACAATGCAACCTTATGTGATCAACTTGAAAAGCTATATAAAGAGCTTCTGTACAAATTTGAGACATTGTACTTCTACAGGTCTCCTGCAACTCAAACTGCAACTGGCAGCAATACAGGTCCAGTTGAAAGGAATCAAAACTCAACCACTAGTTTATCTCAATTAATGGACGAGCAAGATTATCAGAAGGCAGCAAAGATATCCGAGGACTACTCTAGTCAAATTACAGAAAAGAAGAAACGGAGAGGTGCTCCAATAGGACAGAGTGGATATAATATATTCCTCAAGCAGGAGTGTGCTCGACTTAAAGCTTATCATCAGGACGTAGGTGGAAGAAAAATCATAGAGATGGCTATTGATGCTTGGAATAAGTTGTCAGACAAGGAGAAACAGCCATATGAAGAGGCAAGCGTGAAGATAAAGGAAGAAATTAAAGAAGCACCCACCAATAACAAAGAAAAGAAGAAACATAGAGGTGTTCCAAGGGGACAGAAGAGTGCATATCAAATATTCCTCAAGCATGAATGCGCTAGACTTAAAGCTGATCATCAGTTTAAAGGTGACCGAAAAATCACGGCTATTGATGCTTGGAAGATGATGTCCCCCATGGAAAAACTGCCATATGAAGAGGAAAGCATGAAGATAAAGGAAGAAATTAAAGAAGCAATGATCCAAAAGAGCACTGAAGATCTTGAGAGAGATGAAGAGAGACCTATTGTGTGTGGTGACTACTACTCTGTAACTTCACAACCTCTATCAAACTACTCTTTTGGCAACAACGCAGCGGTCGACTTAGATTTTAAACTGACAGAAAAAACATCCGAGGATCCCTTTTTCCCAGGTGATTTGAATGATTATCGTTCGTTAGATTTGCCAACTGGGGAACCCGAGTGA

Protein sequence

>MsaT028230.1

MEEGKELVVMEMVPYENENENFSSMEEAKELEMEMIPYYILTESFHRKLTELLDPSGFNLIFDVRKTSLDLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGNNATLCDQLEKLYKELLYKFETLYFYRSPATQTATGSNTGPVERNQNSTTSLSQLMDEQDYQKAAKISEDYSSQITEKKKRRGAPIGQSGYNIFLKQECARLKAYHQDVGGRKIIEMAIDAWNKLSDKEKQPYEEASVKIKEEIKEAPTNNKEKKKHRGVPRGQKSAYQIFLKHECARLKADHQFKGDRKITAIDAWKMMSPMEKLPYEEESMKIKEEIKEAMIQKSTEDLERDEERPIVCGDYYSVTSQPLSNYSFGNNAAVDLDFKLTEKTSEDPFFPGDLNDYRSLDLPTGEPE*