AlfalfaGEDB | MsaG028253

M. sativa ssp. caerulea / MsaG028253

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457
PFAM: PF04844.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028253	XP_024640742.1	94.798	173	3	2	1	173	1	167	4.38e-112	326

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028253	sp\|Q3EAL1\|OFP6_ARATH	60.317	63	25	0	98	160	67	129	3.16e-20	85.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028253	tr\|A0A396HWM6\|A0A396HWM6_MEDTR	94.798	173	3	2	1	173	1	167	2.09e-112	326

TFs/TRs:

Gene ID	Type	Classification
MsaG028253	TF	OFP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028253	MtrunA17_Chr5g0435131	94.798	173	3	2	1	173	1	167	4.03e-116	326
MsaG028253	MtrunA17_Chr4g0025901	46.471	170	81	4	6	168	4	170	2.30e-39	132
MsaG028253	MtrunA17_Chr4g0025911	40.828	169	93	4	3	168	1	165	7.91e-33	115
MsaG028253	MtrunA17_Chr1g0177881	59.420	69	28	0	97	165	102	170	7.39e-24	92.4
MsaG028253	MtrunA17_Chr7g0267111	36.842	171	93	4	6	161	4	174	1.43e-23	92.0
MsaG028253	MtrunA17_Chr8g0390531	44.304	79	44	0	88	166	249	327	3.88e-18	80.1
MsaG028253	MtrunA17_Chr3g0141471	50.725	69	34	0	94	162	195	263	7.72e-13	65.1
MsaG028253	MtrunA17_Chr5g0432531	43.284	67	38	0	88	154	177	243	5.99e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028253	AT3G52525.1	60.317	63	25	98	160	67	129	3.22e-21	85.5
MsaG028253	AT5G19650.1	53.030	66	31	97	162	154	219	6.98e-21	85.9
MsaG028253	AT2G36026.1	60.656	61	24	102	162	91	151	7.06e-20	82.4
MsaG028253	AT2G18500.1	48.387	62	32	95	156	224	285	8.09e-17	76.6
MsaG028253	AT5G22240.1	45.205	73	40	91	163	90	162	1.61e-15	71.2
MsaG028253	AT1G06920.1	40.580	69	41	94	162	240	308	6.95e-13	65.9

Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGGGAGAAGTGAGGGTATT+AGG	0.156150	5:-59592472	None:intergenic
CCATCACTACAAAGCTTCTT+AGG	0.242237	5:-59592817	None:intergenic
GGGTATTAGGGTTTGTGTTT+TGG	0.265400	5:-59592459	None:intergenic
CTCTATACTTCAAATGATAT+TGG	0.278958	5:+59592672	MsaT028253.1:CDS
TGGGAGAAGTGAGGGTATTA+GGG	0.326639	5:-59592471	None:intergenic
TGTCATTGTTGAAGCGTTCA+TGG	0.333768	5:+59592774	MsaT028253.1:CDS
ACAACAACAATAATAATTAT+AGG	0.352089	5:+59592569	MsaT028253.1:CDS
TTTGTCGTTGGTGTTGGCTT+CGG	0.396392	5:-59592509	None:intergenic
AGAGGGTTCAAGTACGTTAG+AGG	0.399454	5:-59592413	None:intergenic
TTCGGCGTCGTGGGAAGTGG+TGG	0.442026	5:-59592491	None:intergenic
GGCTTCGGCGTCGTGGGAAG+TGG	0.446154	5:-59592494	None:intergenic
GGTGTTGGCTTCGGCGTCGT+GGG	0.479777	5:-59592500	None:intergenic
CCTAAGAAGCTTTGTAGTGA+TGG	0.489027	5:+59592817	MsaT028253.1:CDS
GGGAAGTGGTGGGAGAAGTG+AGG	0.511341	5:-59592480	None:intergenic
GAAATCTTTGTCGTTGGTGT+TGG	0.511751	5:-59592515	None:intergenic
GGAAGTGGTGGGAGAAGTGA+GGG	0.519603	5:-59592479	None:intergenic
TGGTGTTGGCTTCGGCGTCG+TGG	0.520114	5:-59592501	None:intergenic
TTCTCATCTAACAAAAGTTG+TGG	0.528866	5:+59592373	MsaT028253.1:CDS
TCGGCGTCGTGGGAAGTGGT+GGG	0.541073	5:-59592490	None:intergenic
GAGTTTCGAAAATCTTCATA+CGG	0.557400	5:-59592652	None:intergenic
AGATAGCATTGCCGTTGAGA+AGG	0.559747	5:+59592618	MsaT028253.1:CDS
GAGGGTTCAAGTACGTTAGA+GGG	0.563551	5:-59592412	None:intergenic
GCCGTTGTCATTCGAGATGG+TGG	0.579315	5:-59592545	None:intergenic
GTTGCCGTTGTCATTCGAGA+TGG	0.580061	5:-59592548	None:intergenic
GTTGTCATTCGAGATGGTGG+TGG	0.580502	5:-59592542	None:intergenic
TGCCGTTGAGAAGGAATCGA+AGG	0.586299	5:+59592627	MsaT028253.1:CDS
GACGTGTGAAGGACATGTGA+AGG	0.602789	5:+59592842	MsaT028253.1:CDS
GGAAGTGAAATCTTTGTCGT+TGG	0.605510	5:-59592521	None:intergenic
CTCCTTCGATTCCTTCTCAA+CGG	0.636372	5:-59592629	None:intergenic
ACCACCATCTCGAATGACAA+CGG	0.639408	5:+59592544	MsaT028253.1:CDS
ACGCTTCAACAATGACATGA+TGG	0.645246	5:-59592768	None:intergenic
TAGTGATGGTAGACGTGTGA+AGG	0.668871	5:+59592831	MsaT028253.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	59592331	59592861	59592331	ID=MsaG028253
Chr5	mRNA	59592331	59592861	59592331	ID=MsaT028253.1;Parent=MsaG028253
Chr5	exon	59592331	59592861	59592331	ID=MsaT028253.1.exon1;Parent=MsaT028253.1
Chr5	CDS	59592331	59592861	59592331	ID=cds.MsaT028253.1;Parent=MsaT028253.1

Gene Sequence

>MsaT028253.1

ATGTCTTTCAATTTCAACAAGAGAAGCCTCGTCAAAACCCTTTTCTCATCTAACAAAAGTTGTGGTTGCATCAAAATAAAACCCTCTAACGTACTTGAACCCTCTCAAAAACCTAAAATATCCTTTAACCAAAACACAAACCCTAATACCCTCACTTCTCCCACCACTTCCCACGACGCCGAAGCCAACACCAACGACAAAGATTTCACTTCCACCACCATCTCGAATGACAACGGCAACAACAACAATAATAATTATAGGATTTTAAAGCCGGGTACAAAACTCATAGATAGCATTGCCGTTGAGAAGGAATCGAAGGAGCCGTATGAAGATTTTCGAAACTCTATACTTCAAATGATATTGGAGAGAGAGATTTATTCAGAAAATGATCTTCAAGAATTACTTGAGTGTTTTCTTCAACTTAATGCAAAGTGTCACCATCATGTCATTGTTGAAGCGTTCATGGAGACATGTGAAGAAATATTTCCTAAGAAGCTTTGTAGTGATGGTAGACGTGTGAAGGACATGTGA

Protein sequence

>MsaT028253.1

MSFNFNKRSLVKTLFSSNKSCGCIKIKPSNVLEPSQKPKISFNQNTNPNTLTSPTTSHDAEANTNDKDFTSTTISNDNGNNNNNNYRILKPGTKLIDSIAVEKESKEPYEDFRNSILQMILEREIYSENDLQELLECFLQLNAKCHHHVIVEAFMETCEEIFPKKLCSDGRRVKDM*