AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG028273

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG028273 MtrunA17_Chr5g0434841 78.632 234 8 2 1 192 14 247 1.03e-115 332
MsaG028273 MtrunA17_Chr5g0434831 77.157 197 21 3 1 185 1 185 2.03e-92 268
MsaG028273 MtrunA17_Chr5g0434911 64.000 200 49 6 3 192 17 203 2.16e-75 228
MsaG028273 MtrunA17_Chr5g0434931 59.487 195 54 5 1 184 29 209 3.07e-67 207
MsaG028273 MtrunA17_Chr7g0220341 59.788 189 50 6 1 178 19 192 3.30e-67 207
MsaG028273 MtrunA17_Chr7g0228991 58.974 195 55 5 1 184 23 203 1.43e-66 206
MsaG028273 MtrunA17_Chr8g0360111 61.421 197 54 4 1 188 19 202 2.17e-65 202
MsaG028273 MtrunA17_Chr7g0240821 49.693 163 70 2 11 166 5 162 4.17e-48 157
MsaG028273 MtrunA17_Chr4g0070641 52.206 136 57 2 4 132 9 143 1.16e-40 136
MsaG028273 MtrunA17_Chr4g0070611 52.206 136 57 2 4 132 9 143 2.55e-40 139
MsaG028273 MtrunA17_Chr5g0434901 60.976 123 27 3 41 156 7 115 1.32e-39 131
MsaG028273 MtrunA17_Chr4g0022901 44.898 147 74 1 2 141 8 154 9.32e-39 134
MsaG028273 MtrunA17_Chr4g0022931 48.299 147 64 2 2 141 8 149 8.46e-38 132
MsaG028273 MtrunA17_Chr3g0121241 56.881 109 40 1 4 105 39 147 1.43e-37 132
MsaG028273 MtrunA17_Chr4g0022911 51.562 128 55 1 2 122 8 135 2.45e-37 131
MsaG028273 MtrunA17_Chr7g0229131 47.561 164 68 6 39 195 4 156 4.77e-37 127
MsaG028273 MtrunA17_Chr7g0274581 55.046 109 42 1 3 104 8 116 4.78e-37 128
MsaG028273 MtrunA17_Chr7g0229101 70.476 105 23 2 39 136 4 107 1.40e-36 127
MsaG028273 MtrunA17_Chr4g0055981 44.667 150 74 3 4 146 52 199 6.64e-35 123
MsaG028273 MtrunA17_Chr2g0323351 48.175 137 62 3 4 131 9 145 1.59e-34 122
MsaG028273 MtrunA17_Chr5g0435101 54.128 109 43 1 4 105 8 116 1.63e-34 121
MsaG028273 MtrunA17_Chr1g0187761 47.287 129 61 1 3 124 8 136 2.14e-34 122
MsaG028273 MtrunA17_Chr8g0343831 55.140 107 41 1 5 104 6 112 2.38e-34 122
MsaG028273 MtrunA17_Chr7g0275911 46.939 147 69 2 4 143 9 153 2.47e-34 122
MsaG028273 MtrunA17_Chr1g0167661 50.442 113 49 1 3 108 8 120 6.23e-34 121
MsaG028273 MtrunA17_Chr1g0167691 50.909 110 47 1 3 105 8 117 6.52e-34 121
MsaG028273 MtrunA17_Chr4g0048511 52.252 111 46 1 2 105 8 118 9.25e-34 123
MsaG028273 MtrunA17_Chr7g0217221 53.704 108 43 1 4 104 9 116 9.33e-34 121
MsaG028273 MtrunA17_Chr8g0346561 53.704 108 43 1 4 104 9 116 1.43e-33 121
MsaG028273 MtrunA17_Chr3g0115821 39.444 180 78 3 4 168 9 172 1.62e-33 122
MsaG028273 MtrunA17_Chr4g0037141 40.491 163 75 3 9 149 14 176 1.85e-33 120
MsaG028273 MtrunA17_Chr2g0281071 52.252 111 46 1 2 105 8 118 3.58e-33 121
MsaG028273 MtrunA17_Chr3g0131121 44.521 146 73 2 3 141 8 152 5.22e-33 120
MsaG028273 MtrunA17_Chr1g0203411 52.294 109 45 1 3 104 8 116 6.12e-33 119
MsaG028273 MtrunA17_Chr5g0410961 54.206 107 42 1 6 105 11 117 7.62e-33 120
MsaG028273 MtrunA17_Chr7g0261281 46.212 132 62 2 3 125 8 139 8.22e-33 119
MsaG028273 MtrunA17_Chr5g0395281 51.376 109 46 1 4 105 9 117 9.48e-33 119
MsaG028273 MtrunA17_Chr3g0092401 48.413 126 58 1 3 121 9 134 2.41e-32 118
MsaG028273 MtrunA17_Chr7g0254411 43.030 165 67 3 3 157 8 155 3.88e-32 118
MsaG028273 MtrunA17_Chr4g0039971 52.294 109 45 1 4 105 10 118 3.96e-32 119
MsaG028273 MtrunA17_Chr4g0060721 51.376 109 46 1 3 104 9 117 2.26e-31 116
MsaG028273 MtrunA17_Chr2g0323411 51.376 109 46 1 4 105 9 117 2.98e-31 116
MsaG028273 MtrunA17_Chr4g0058631 39.759 166 84 4 4 160 9 167 3.32e-31 116
MsaG028273 MtrunA17_Chr1g0211161 49.541 109 48 1 4 105 10 118 3.84e-31 113
MsaG028273 MtrunA17_Chr7g0270891 50.926 108 46 1 4 104 9 116 1.39e-30 115
MsaG028273 MtrunA17_Chr4g0042671 50.459 109 47 1 3 104 8 116 2.48e-30 115
MsaG028273 MtrunA17_Chr6g0453211 52.941 102 41 1 4 98 9 110 3.30e-30 113
MsaG028273 MtrunA17_Chr4g0044421 50.943 106 45 1 9 107 14 119 5.52e-30 109
MsaG028273 MtrunA17_Chr4g0068061 48.624 109 49 1 3 104 8 116 7.46e-30 112
MsaG028273 MtrunA17_Chr1g0193801 50.000 108 47 1 4 104 9 116 7.56e-30 113
MsaG028273 MtrunA17_Chr3g0117091 49.541 109 48 1 4 105 9 117 8.08e-30 112
MsaG028273 MtrunA17_Chr8g0342541 47.706 109 50 1 4 105 9 117 8.83e-30 112
MsaG028273 MtrunA17_Chr1g0203441 48.696 115 52 1 8 115 14 128 9.58e-30 110
MsaG028273 MtrunA17_Chr6g0452271 48.624 109 49 1 4 105 9 117 1.87e-29 111
MsaG028273 MtrunA17_Chr7g0217741 48.624 109 49 1 3 104 8 116 2.62e-29 110
MsaG028273 MtrunA17_Chr6g0470971 48.246 114 52 1 3 109 10 123 2.76e-29 110
MsaG028273 MtrunA17_Chr8g0385321 47.321 112 52 1 3 107 8 119 2.83e-29 110
MsaG028273 MtrunA17_Chr1g0193371 49.074 108 48 1 4 104 9 116 4.53e-29 111
MsaG028273 MtrunA17_Chr3g0103281 47.706 109 50 1 3 104 8 116 4.57e-29 110
MsaG028273 MtrunA17_Chr4g0022881 49.057 106 47 1 4 102 9 114 5.47e-29 108
MsaG028273 MtrunA17_Chr6g0453471 50.000 108 47 1 4 104 9 116 5.87e-29 110
MsaG028273 MtrunA17_Chr8g0342521 45.872 109 52 1 4 105 9 117 7.92e-29 110
MsaG028273 MtrunA17_Chr2g0330041 47.706 109 50 1 4 105 9 117 7.98e-29 110
MsaG028273 MtrunA17_Chr8g0349261 49.107 112 49 2 2 105 8 119 9.94e-29 108
MsaG028273 MtrunA17_Chr1g0151941 47.273 110 50 2 4 105 9 118 1.47e-28 107
MsaG028273 MtrunA17_Chr5g0400821 43.802 121 60 2 4 116 9 129 2.00e-28 108
MsaG028273 MtrunA17_Chr1g0152011 37.500 152 84 3 4 144 9 160 2.09e-28 108
MsaG028273 MtrunA17_Chr4g0022891 47.619 105 48 1 4 101 9 113 2.88e-28 106
MsaG028273 MtrunA17_Chr3g0135311 36.571 175 98 4 4 169 9 179 3.13e-28 108
MsaG028273 MtrunA17_Chr1g0209661 39.665 179 86 6 7 174 27 194 4.82e-28 107
MsaG028273 MtrunA17_Chr5g0417821 46.429 112 53 1 1 105 1 112 7.85e-28 106
MsaG028273 MtrunA17_Chr2g0309911 45.045 111 54 1 4 107 8 118 9.09e-28 106
MsaG028273 MtrunA17_Chr3g0099131 48.077 104 47 1 7 103 41 144 9.87e-28 109
MsaG028273 MtrunA17_Chr7g0228891 49.074 108 48 1 4 104 9 116 2.42e-27 104
MsaG028273 MtrunA17_Chr7g0271241 52.475 101 41 1 4 97 9 109 3.73e-27 106
MsaG028273 MtrunA17_Chr8g0342481 47.273 110 50 2 4 105 9 118 4.53e-27 106
MsaG028273 MtrunA17_Chr8g0387421 45.370 108 52 1 4 104 9 116 5.09e-27 104
MsaG028273 MtrunA17_Chr1g0194951 46.296 108 51 1 4 104 9 116 7.80e-27 105
MsaG028273 MtrunA17_Chr7g0264641 49.091 110 48 2 4 105 9 118 8.36e-27 103
MsaG028273 MtrunA17_Chr3g0080861 46.667 105 49 1 7 104 37 141 1.01e-26 106
MsaG028273 MtrunA17_Chr4g0054391 35.593 177 98 6 4 171 9 178 1.71e-26 102
MsaG028273 MtrunA17_Chr8g0354661 48.077 104 47 1 7 103 37 140 1.83e-26 105
MsaG028273 MtrunA17_Chr2g0328771 44.762 105 51 1 7 104 20 124 2.73e-26 102
MsaG028273 MtrunA17_Chr5g0395221 55.000 80 36 0 4 83 9 88 3.02e-26 96.7
MsaG028273 MtrunA17_Chr7g0228231 43.590 117 57 2 7 116 14 128 4.00e-26 100
MsaG028273 MtrunA17_Chr1g0168661 44.715 123 58 2 8 123 22 141 4.01e-26 101
MsaG028273 MtrunA17_Chr4g0057031 47.706 109 50 1 4 105 9 117 4.64e-26 101
MsaG028273 MtrunA17_Chr4g0032401 45.714 105 50 1 7 104 17 121 6.80e-26 102
MsaG028273 MtrunA17_Chr3g0110351 49.074 108 48 1 4 104 9 116 1.02e-25 101
MsaG028273 MtrunA17_Chr2g0327821 44.037 109 54 1 7 108 6 114 1.58e-25 99.0
MsaG028273 MtrunA17_Chr2g0311221 46.078 102 48 1 4 98 11 112 1.75e-25 100
MsaG028273 MtrunA17_Chr2g0322521 45.455 110 53 1 1 103 23 132 1.81e-25 102
MsaG028273 MtrunA17_Chr5g0434571 49.074 108 48 1 4 104 45 152 2.00e-25 101
MsaG028273 MtrunA17_Chr1g0154031 48.077 104 47 1 7 103 76 179 2.10e-25 102
MsaG028273 MtrunA17_Chr1g0192411 47.619 105 48 1 7 104 12 116 2.49e-25 101
MsaG028273 MtrunA17_Chr5g0434891 42.553 141 49 5 72 193 1 128 2.96e-25 95.9
MsaG028273 MtrunA17_Chr4g0028311 46.364 110 51 2 4 105 9 118 3.19e-25 100
MsaG028273 MtrunA17_Chr1g0194291 46.364 110 52 1 2 104 16 125 3.45e-25 99.0
MsaG028273 MtrunA17_Chr3g0088461 43.519 108 54 1 4 104 19 126 4.39e-25 100
MsaG028273 MtrunA17_Chr1g0186061 43.902 123 59 2 8 123 21 140 4.51e-25 98.6
MsaG028273 MtrunA17_Chr6g0487491 43.220 118 51 2 4 105 9 126 7.54e-25 97.8
MsaG028273 MtrunA17_Chr6g0450101 45.714 105 50 1 7 104 14 118 1.01e-24 96.3
MsaG028273 MtrunA17_Chr5g0397231 45.098 102 49 1 4 98 9 110 1.70e-24 98.6
MsaG028273 MtrunA17_Chr7g0269831 45.872 109 52 1 3 104 8 116 2.43e-24 98.2
MsaG028273 MtrunA17_Chr1g0180391 45.045 111 54 1 7 110 19 129 3.14e-24 95.5
MsaG028273 MtrunA17_Chr2g0327351 47.573 103 46 2 4 98 9 111 4.89e-24 97.1
MsaG028273 MtrunA17_Chr4g0072751 47.573 103 46 2 4 98 9 111 5.57e-24 97.1
MsaG028273 MtrunA17_Chr4g0042611 54.545 77 35 0 7 83 12 88 9.69e-24 90.1
MsaG028273 MtrunA17_Chr1g0194301 43.636 110 55 1 2 104 28 137 2.22e-23 94.4
MsaG028273 MtrunA17_Chr2g0323321 51.282 78 38 0 6 83 10 87 4.51e-23 89.4
MsaG028273 MtrunA17_Chr5g0440781 41.748 103 52 1 8 102 13 115 4.84e-23 91.3
MsaG028273 MtrunA17_Chr5g0440761 41.748 103 52 1 8 102 13 115 1.64e-22 91.7
MsaG028273 MtrunA17_Chr5g0441141 41.748 103 52 1 8 102 13 115 2.33e-22 91.7
MsaG028273 MtrunA17_Chr2g0294811 49.383 81 41 0 3 83 8 88 2.99e-22 87.4
MsaG028273 MtrunA17_Chr8g0342531 50.000 80 40 0 4 83 9 88 3.82e-22 88.6
MsaG028273 MtrunA17_Chr8g0342511 51.899 79 38 0 4 82 9 87 3.92e-22 86.3
MsaG028273 MtrunA17_Chr4g0030881 41.818 110 50 2 8 103 8 117 8.68e-22 89.7
MsaG028273 MtrunA17_Chr5g0441131 40.777 103 53 1 8 102 10 112 1.07e-21 87.8
MsaG028273 MtrunA17_Chr4g0068921 45.370 108 52 1 2 102 19 126 4.45e-21 86.3
MsaG028273 MtrunA17_Chr1g0157731 41.284 109 48 3 7 104 89 192 8.50e-21 89.7
MsaG028273 MtrunA17_Chr2g0293911 46.602 103 48 1 7 102 24 126 1.57e-20 87.4
MsaG028273 MtrunA17_Chr4g0008551 38.793 116 63 2 9 117 38 152 2.50e-20 87.0
MsaG028273 MtrunA17_Chr3g0099141 49.351 77 39 0 7 83 40 116 2.89e-20 82.8
MsaG028273 MtrunA17_Chr8g0342461 48.148 81 41 1 4 83 9 89 9.77e-20 81.6
MsaG028273 MtrunA17_Chr8g0342471 46.914 81 42 1 4 83 9 89 3.56e-19 80.1
MsaG028273 MtrunA17_Chr4g0053431 40.196 102 53 2 9 103 5 105 3.59e-19 82.8
MsaG028273 MtrunA17_Chr5g0401731 40.196 102 53 2 9 103 15 115 4.02e-19 83.6
MsaG028273 MtrunA17_Chr5g0417621 41.176 102 52 2 9 103 134 234 4.99e-19 84.3
MsaG028273 MtrunA17_Chr4g0042501 40.196 102 53 2 9 103 105 205 5.09e-19 84.3
MsaG028273 MtrunA17_Chr5g0434881 78.049 41 9 0 1 41 1 41 8.23e-19 76.3
MsaG028273 MtrunA17_Chr3g0139671 38.095 105 57 2 7 104 83 186 1.83e-18 83.2
MsaG028273 MtrunA17_Chr7g0238631 40.952 105 54 2 7 104 111 214 2.05e-18 82.8
MsaG028273 MtrunA17_Chr7g0247131 49.315 73 30 1 39 104 10 82 3.80e-18 80.1
MsaG028273 MtrunA17_Chr5g0434871 67.606 71 15 2 69 132 2 71 1.68e-17 73.6
MsaG028273 MtrunA17_Chr6g0454921 39.623 106 48 3 9 103 15 115 2.98e-17 76.6
MsaG028273 MtrunA17_Chr3g0125801 35.570 149 73 5 2 143 9 141 3.74e-17 77.8
MsaG028273 MtrunA17_Chr3g0117511 37.931 116 62 3 1 108 175 288 4.84e-17 78.6
MsaG028273 MtrunA17_Chr4g0058991 38.938 113 59 3 3 107 203 313 5.08e-17 78.6
MsaG028273 MtrunA17_Chr3g0133601 37.864 103 56 2 9 104 37 138 5.69e-17 76.3
MsaG028273 MtrunA17_Chr5g0429661 33.540 161 89 5 2 151 115 268 6.07e-17 77.8
MsaG028273 MtrunA17_Chr7g0254261 41.176 102 52 2 9 103 89 189 9.16e-17 77.4
MsaG028273 MtrunA17_Chr5g0425591 43.243 74 42 0 8 81 10 83 1.20e-16 72.0
MsaG028273 MtrunA17_Chr8g0334881 41.284 109 54 3 7 107 10 116 1.30e-16 76.6
MsaG028273 MtrunA17_Chr6g0480581 39.175 97 51 2 9 98 4 99 1.42e-16 75.5
MsaG028273 MtrunA17_Chr7g0228531 41.176 102 51 3 9 103 220 319 2.49e-16 76.6
MsaG028273 MtrunA17_Chr7g0238651 41.667 96 47 2 12 98 10 105 6.09e-16 75.1
MsaG028273 MtrunA17_Chr6g0460661 40.206 97 50 2 9 98 16 111 6.17e-16 72.0
MsaG028273 MtrunA17_Chr4g0013361 39.000 100 53 2 7 98 10 109 1.65e-15 73.2
MsaG028273 MtrunA17_Chr6g0460671 39.216 102 54 2 9 103 99 199 2.20e-15 73.6
MsaG028273 MtrunA17_Chr6g0453751 39.535 86 44 1 5 82 18 103 4.80e-15 68.9
MsaG028273 MtrunA17_Chr5g0437321 36.893 103 49 3 9 100 19 116 1.08e-13 68.2
MsaG028273 MtrunA17_Chr5g0397841 29.379 177 105 6 7 171 108 276 1.74e-13 68.2
MsaG028273 MtrunA17_Chr3g0093811 45.205 73 33 1 39 104 14 86 8.74e-13 65.5
MsaG028273 MtrunA17_Chr7g0228401 38.202 89 47 2 20 101 290 377 5.31e-12 63.9
MsaG028273 MtrunA17_Chr1g0193901 49.153 59 29 1 5 62 9 67 2.72e-11 58.5
MsaG028273 MtrunA17_Chr1g0193891 49.153 59 29 1 5 62 9 67 2.72e-11 58.5
MsaG028273 MtrunA17_Chr1g0193871 49.153 59 29 1 5 62 9 67 2.72e-11 58.5
MsaG028273 MtrunA17_Chr1g0193881 49.153 59 29 1 5 62 9 67 2.72e-11 58.5
MsaG028273 MtrunA17_Chr1g0177901 37.931 87 46 2 19 98 4 89 8.44e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG028273 AT1G66370.1 60.959 146 46 2 2 136 3 148 1.95e-52 169
MsaG028273 AT1G56650.1 59.155 142 48 2 5 136 6 147 6.55e-44 147
MsaG028273 AT1G66380.1 71.560 109 24 1 5 106 6 114 1.03e-43 143
MsaG028273 AT1G66390.1 53.216 171 62 3 5 164 6 169 3.39e-43 145
MsaG028273 AT3G13540.1 55.046 109 42 1 4 105 20 128 1.74e-37 130
MsaG028273 AT5G14750.1 40.120 167 87 4 8 166 17 178 9.55e-36 125
MsaG028273 AT5G16770.4 55.963 109 41 1 4 105 9 117 2.03e-35 127
MsaG028273 AT5G16770.3 55.963 109 41 1 4 105 9 117 2.03e-35 127
MsaG028273 AT5G16770.1 55.963 109 41 1 4 105 9 117 2.66e-35 127
MsaG028273 AT5G16770.2 55.963 109 41 1 4 105 9 117 2.66e-35 127
MsaG028273 AT3G27920.1 53.333 105 42 1 8 105 15 119 4.35e-35 124
MsaG028273 AT5G40330.1 53.846 104 41 1 8 104 13 116 9.89e-35 122
MsaG028273 AT1G22640.1 51.786 112 47 1 3 107 8 119 1.58e-34 123
MsaG028273 AT4G09460.1 43.662 142 73 1 9 143 14 155 2.19e-34 122
MsaG028273 AT5G60890.1 53.211 109 44 1 3 104 8 116 3.16e-34 123
MsaG028273 AT4G17785.2 53.153 111 45 1 2 105 8 118 4.40e-34 124
MsaG028273 AT4G17785.1 53.153 111 45 1 2 105 8 118 4.58e-34 124
MsaG028273 AT4G38620.1 44.172 163 76 4 9 161 14 171 5.93e-34 122
MsaG028273 AT3G02940.2 55.046 109 42 1 4 105 9 117 6.20e-34 123
MsaG028273 AT3G02940.1 55.046 109 42 1 4 105 9 117 8.33e-34 123
MsaG028273 AT3G02940.3 55.046 109 42 1 4 105 9 117 8.33e-34 123
MsaG028273 AT3G23250.1 44.667 150 71 3 3 142 8 155 1.14e-33 122
MsaG028273 AT1G66380.2 75.949 79 19 0 5 83 6 84 1.21e-33 116
MsaG028273 AT5G65230.1 53.211 109 44 1 4 105 9 117 8.18e-33 120
MsaG028273 AT4G21440.1 51.818 110 46 1 3 105 8 117 1.13e-32 120
MsaG028273 AT5G35550.1 47.899 119 54 2 3 114 10 127 1.48e-32 118
MsaG028273 AT4G05100.1 51.351 111 47 1 2 105 8 118 1.78e-32 119
MsaG028273 AT5G10280.1 40.476 168 77 2 1 161 6 157 2.36e-32 119
MsaG028273 AT1G08810.1 47.656 128 58 2 4 124 9 134 3.81e-32 117
MsaG028273 AT5G07700.1 52.778 108 44 1 5 105 10 117 4.25e-32 119
MsaG028273 AT5G07700.2 52.778 108 44 1 5 105 10 117 4.25e-32 119
MsaG028273 AT3G47600.1 54.630 108 42 1 4 104 9 116 4.27e-32 119
MsaG028273 AT1G18570.1 52.294 109 45 1 6 107 12 120 4.40e-32 119
MsaG028273 AT2G16720.1 49.107 112 50 1 3 107 8 119 5.05e-32 117
MsaG028273 AT5G61420.2 50.000 110 48 1 5 107 10 119 8.01e-32 119
MsaG028273 AT5G07690.1 50.909 110 47 1 5 107 10 119 9.80e-32 118
MsaG028273 AT3G48920.1 45.161 124 61 1 1 117 12 135 1.04e-31 116
MsaG028273 AT5G62470.2 50.847 118 51 1 3 113 8 125 1.18e-31 118
MsaG028273 AT4G01680.3 51.852 108 45 1 4 104 9 116 1.59e-31 115
MsaG028273 AT1G34670.1 53.211 109 44 1 4 105 9 117 1.60e-31 118
MsaG028273 AT3G28910.1 53.704 108 43 1 4 104 9 116 1.65e-31 117
MsaG028273 AT1G74650.1 50.893 112 48 1 7 111 12 123 2.01e-31 117
MsaG028273 AT3G61250.1 51.376 109 46 1 4 105 9 117 2.08e-31 116
MsaG028273 AT4G34990.1 51.923 104 43 1 9 105 14 117 2.19e-31 115
MsaG028273 AT1G35515.1 41.026 156 67 4 3 144 8 152 2.37e-31 114
MsaG028273 AT3G30210.1 41.892 148 73 3 6 144 26 169 2.77e-31 115
MsaG028273 AT5G52600.1 48.739 119 54 1 2 113 7 125 3.23e-31 113
MsaG028273 AT1G74080.1 47.321 112 52 1 3 107 8 119 3.91e-31 116
MsaG028273 AT4G28110.1 48.624 109 49 1 4 105 9 117 5.87e-31 114
MsaG028273 AT5G54230.1 51.887 106 44 1 7 105 12 117 6.52e-31 115
MsaG028273 AT1G06180.1 47.500 120 56 1 3 115 8 127 7.24e-31 113
MsaG028273 AT4G01680.1 51.852 108 45 1 4 104 9 116 8.48e-31 115
MsaG028273 AT2G31180.1 50.459 109 47 1 3 104 8 116 1.38e-30 113
MsaG028273 AT3G01140.2 51.376 109 46 1 4 105 9 117 1.55e-30 115
MsaG028273 AT1G16490.1 44.000 125 63 1 4 121 11 135 2.48e-30 112
MsaG028273 AT5G15310.4 50.459 109 47 1 4 105 9 117 3.08e-30 112
MsaG028273 AT5G15310.1 50.459 109 47 1 4 105 9 117 3.32e-30 114
MsaG028273 AT3G01140.1 51.376 109 46 1 4 105 52 160 3.46e-30 114
MsaG028273 AT5G15310.2 50.459 109 47 1 4 105 9 117 4.14e-30 113
MsaG028273 AT5G62470.1 50.847 118 50 2 3 113 8 124 4.19e-30 114
MsaG028273 AT1G74430.1 50.943 106 45 1 6 104 11 116 6.72e-30 111
MsaG028273 AT5G56110.1 49.541 109 48 1 3 104 8 116 6.76e-30 112
MsaG028273 AT5G49330.1 47.748 111 51 1 3 106 8 118 8.26e-30 113
MsaG028273 AT3G13890.2 47.706 109 50 1 4 105 9 117 8.57e-30 113
MsaG028273 AT5G26660.1 50.000 108 47 1 4 104 9 116 1.50e-29 112
MsaG028273 AT5G23000.1 38.150 173 91 4 4 168 9 173 2.92e-29 111
MsaG028273 AT1G57560.2 48.624 109 49 1 4 105 9 117 2.98e-29 110
MsaG028273 AT1G57560.1 48.624 109 49 1 4 105 9 117 3.53e-29 110
MsaG028273 AT5G57620.1 45.600 125 60 2 4 120 9 133 4.46e-29 110
MsaG028273 AT3G46130.1 46.087 115 55 1 1 108 3 117 7.92e-29 108
MsaG028273 AT2G26960.1 49.057 106 47 1 4 102 17 122 1.38e-28 111
MsaG028273 AT1G09540.1 47.748 111 51 1 4 107 9 119 2.35e-28 109
MsaG028273 AT5G65790.1 36.709 158 92 2 4 153 9 166 2.67e-28 109
MsaG028273 AT1G25340.1 41.209 182 76 5 8 160 19 198 2.73e-28 107
MsaG028273 AT5G55020.1 51.456 103 43 1 7 102 26 128 2.77e-28 111
MsaG028273 AT5G62320.1 39.264 163 82 4 6 151 12 174 2.96e-28 106
MsaG028273 AT3G62610.1 34.135 208 98 6 3 194 8 192 2.98e-28 108
MsaG028273 AT2G32460.1 49.057 106 47 1 5 103 16 121 3.11e-28 110
MsaG028273 AT2G32460.2 49.057 106 47 1 5 103 4 109 3.16e-28 110
MsaG028273 AT3G28470.1 49.020 102 45 1 4 98 9 110 3.18e-28 108
MsaG028273 AT1G18710.1 49.057 106 47 1 6 104 11 116 3.94e-28 107
MsaG028273 AT4G26930.1 50.485 103 44 1 7 102 19 121 4.38e-28 109
MsaG028273 AT5G59780.3 48.148 108 49 1 8 108 9 116 7.96e-28 105
MsaG028273 AT3G12720.1 46.789 109 51 1 4 105 19 127 1.28e-27 106
MsaG028273 AT3G01530.1 47.222 108 50 1 2 102 20 127 1.52e-27 103
MsaG028273 AT2G47460.1 44.954 109 53 1 3 104 8 116 1.61e-27 107
MsaG028273 AT4G25560.1 48.571 105 47 1 8 105 11 115 1.71e-27 105
MsaG028273 AT4G01680.2 46.667 120 45 2 4 104 9 128 2.04e-27 106
MsaG028273 AT5G12870.1 44.860 107 52 1 5 104 16 122 2.21e-27 105
MsaG028273 AT4G37780.1 45.133 113 54 2 4 108 9 121 2.37e-27 105
MsaG028273 AT1G79180.1 46.296 108 51 1 4 104 11 118 2.40e-27 105
MsaG028273 AT3G49690.1 47.899 119 52 3 4 112 9 127 2.99e-27 105
MsaG028273 AT1G56160.1 45.455 110 53 1 4 106 11 120 5.34e-27 104
MsaG028273 AT3G11440.2 44.444 108 53 1 3 103 37 144 6.89e-27 107
MsaG028273 AT3G13890.1 44.068 118 50 2 4 105 9 126 9.32e-27 105
MsaG028273 AT3G12820.1 44.144 111 55 1 4 107 11 121 1.11e-26 102
MsaG028273 AT3G11440.3 44.444 108 53 1 3 103 37 144 1.19e-26 106
MsaG028273 AT3G11440.4 44.444 108 53 1 3 103 37 144 1.19e-26 106
MsaG028273 AT3G11440.1 44.444 108 53 1 3 103 37 144 1.19e-26 106
MsaG028273 AT2G47190.1 44.545 110 54 1 2 104 15 124 1.32e-26 103
MsaG028273 AT3G24310.1 44.094 127 61 2 4 123 15 138 1.62e-26 102
MsaG028273 AT4G13480.1 48.305 118 53 2 8 118 7 123 2.09e-26 102
MsaG028273 AT5G52260.1 51.402 107 45 1 4 103 9 115 3.43e-26 102
MsaG028273 AT5G06100.1 43.810 105 52 1 6 103 31 135 3.58e-26 104
MsaG028273 AT5G40350.1 33.516 182 110 4 7 180 17 195 4.33e-26 100
MsaG028273 AT5G06100.5 43.810 105 52 1 6 103 31 135 6.00e-26 104
MsaG028273 AT5G06100.2 43.810 105 52 1 6 103 31 135 6.00e-26 104
MsaG028273 AT5G06100.3 43.810 105 52 1 6 103 31 135 6.00e-26 104
MsaG028273 AT5G06100.4 43.810 105 52 1 6 103 31 135 6.00e-26 104
MsaG028273 AT3G53200.1 46.364 110 52 1 1 103 3 112 1.11e-25 100
MsaG028273 AT1G63910.1 44.444 108 53 1 4 104 9 116 1.17e-25 102
MsaG028273 AT1G68320.1 50.476 105 45 1 7 104 19 123 1.31e-25 100
MsaG028273 AT3G08500.1 45.370 108 52 1 4 104 27 134 2.02e-25 101
MsaG028273 AT5G14340.1 47.222 108 50 1 4 104 21 128 2.59e-25 99.8
MsaG028273 AT1G66230.1 48.148 108 49 1 4 104 9 116 2.68e-25 99.8
MsaG028273 AT4G22680.1 46.789 109 51 1 4 105 9 117 3.62e-25 99.4
MsaG028273 AT1G48000.1 48.544 103 46 1 7 102 32 134 4.71e-25 98.6
MsaG028273 AT1G25340.2 40.110 182 73 6 8 160 19 193 5.07e-25 99.0
MsaG028273 AT1G25340.3 40.110 182 73 6 8 160 19 193 6.98e-25 99.4
MsaG028273 AT2G36890.1 47.273 110 50 2 4 105 9 118 1.19e-24 98.6
MsaG028273 AT2G36890.2 47.273 110 50 2 4 105 50 159 1.27e-24 99.0
MsaG028273 AT3G27810.1 44.762 105 51 1 7 104 20 124 2.05e-24 96.3
MsaG028273 AT5G16600.1 47.222 108 50 1 4 104 9 116 2.98e-24 97.8
MsaG028273 AT4G12350.1 45.283 106 51 1 7 105 12 117 6.03e-24 96.3
MsaG028273 AT5G14750.3 40.602 133 63 5 34 158 12 136 1.13e-23 92.8
MsaG028273 AT1G69560.1 35.714 140 78 3 4 136 102 236 4.54e-23 94.7
MsaG028273 AT1G69560.2 35.714 140 78 3 4 136 118 252 4.95e-23 95.1
MsaG028273 AT2G26950.1 41.905 105 54 1 1 98 10 114 1.30e-22 94.4
MsaG028273 AT1G66380.3 69.444 72 15 1 39 103 7 78 4.24e-22 87.0
MsaG028273 AT5G11510.3 42.857 105 52 2 7 104 79 182 6.22e-22 93.6
MsaG028273 AT5G11510.1 42.857 105 52 2 7 104 79 182 6.22e-22 93.6
MsaG028273 AT5G11510.4 42.857 105 52 2 7 104 79 182 6.22e-22 93.6
MsaG028273 AT5G11510.2 42.857 105 52 2 7 104 79 182 8.90e-22 93.2
MsaG028273 AT5G11510.5 42.857 105 52 2 7 104 79 182 1.14e-21 92.8
MsaG028273 AT1G79180.2 34.752 141 52 2 4 104 11 151 4.25e-21 89.4
MsaG028273 AT3G06490.1 45.872 109 52 1 1 102 13 121 2.48e-20 87.4
MsaG028273 AT5G35550.2 51.220 82 32 2 40 114 50 130 3.62e-20 85.9
MsaG028273 AT1G26780.1 42.308 104 52 2 7 103 96 198 1.08e-19 84.7
MsaG028273 AT1G26780.2 42.308 104 52 2 7 103 96 198 1.48e-19 85.5
MsaG028273 AT3G09230.1 42.308 104 52 2 9 105 55 157 1.52e-19 85.9
MsaG028273 AT4G18770.1 41.026 117 53 3 3 108 211 322 1.55e-19 85.9
MsaG028273 AT4G37260.1 41.176 102 52 2 9 103 13 113 2.49e-19 84.3
MsaG028273 AT3G53200.2 51.948 77 30 1 34 103 3 79 2.53e-19 82.4
MsaG028273 AT5G02320.1 40.000 105 55 2 7 104 125 228 3.42e-19 85.5
MsaG028273 AT5G02320.2 40.000 105 55 2 7 104 125 228 3.42e-19 85.5
MsaG028273 AT5G49620.1 44.037 109 54 1 1 102 20 128 3.50e-19 84.0
MsaG028273 AT3G47600.2 58.333 72 23 1 40 104 39 110 3.86e-19 84.0
MsaG028273 AT5G26660.2 48.052 77 33 1 35 104 9 85 4.26e-19 84.0
MsaG028273 AT4G32730.5 39.450 109 50 3 7 104 85 188 5.10e-19 85.1
MsaG028273 AT4G32730.4 39.450 109 50 3 7 104 85 188 5.10e-19 85.1
MsaG028273 AT4G32730.3 39.450 109 50 3 7 104 85 188 5.10e-19 85.1
MsaG028273 AT4G32730.2 39.450 109 50 3 7 104 85 188 5.10e-19 85.1
MsaG028273 AT5G02320.3 40.000 105 55 2 7 104 65 168 5.39e-19 84.7
MsaG028273 AT4G32730.1 39.450 109 50 3 7 104 85 188 6.13e-19 84.7
MsaG028273 AT3G09370.2 40.385 104 54 2 7 103 133 235 7.84e-19 84.3
MsaG028273 AT3G09370.1 40.385 104 54 2 7 103 128 230 7.93e-19 84.3
MsaG028273 AT3G09370.3 40.385 104 54 2 7 103 141 243 1.28e-18 83.6
MsaG028273 AT2G23290.1 41.176 102 52 2 9 103 13 113 1.67e-18 82.0
MsaG028273 AT2G39880.1 41.509 106 46 3 9 103 50 150 3.18e-18 82.0
MsaG028273 AT3G55730.1 42.157 102 51 2 9 103 56 156 3.40e-18 82.0
MsaG028273 AT2G37630.1 40.517 116 54 3 12 118 7 116 4.27e-18 81.6
MsaG028273 AT5G17800.1 34.127 126 72 3 9 127 93 214 7.60e-18 80.5
MsaG028273 AT5G59780.2 50.000 78 32 1 38 108 18 95 1.07e-17 78.2
MsaG028273 AT4G33450.1 33.333 135 78 3 3 130 13 142 1.07e-17 79.0
MsaG028273 AT3G60460.1 39.815 108 57 2 3 102 7 114 1.17e-17 79.7
MsaG028273 AT3G12820.2 48.611 72 30 1 43 107 2 73 1.30e-17 77.4
MsaG028273 AT3G46130.4 50.000 78 32 1 38 108 18 95 1.43e-17 78.6
MsaG028273 AT5G67300.1 41.176 102 52 2 9 103 6 106 1.48e-17 79.3
MsaG028273 AT3G46130.3 49.351 77 32 1 39 108 9 85 3.01e-17 77.4
MsaG028273 AT1G17950.1 37.500 112 56 3 9 107 5 115 3.82e-17 77.4
MsaG028273 AT5G49620.2 39.024 123 54 1 1 102 20 142 6.55e-17 77.8
MsaG028273 AT3G50060.1 34.375 128 68 3 9 121 6 132 9.50e-17 77.0
MsaG028273 AT3G27785.1 38.889 108 58 2 3 103 183 289 1.22e-16 77.8
MsaG028273 AT5G58850.1 36.522 115 65 2 5 112 101 214 1.45e-16 77.4
MsaG028273 AT1G73410.1 39.252 107 49 3 9 104 6 107 8.79e-16 73.6
MsaG028273 AT3G29020.2 37.500 104 55 3 9 104 67 168 9.12e-16 74.3
MsaG028273 AT3G29020.1 37.500 104 55 3 9 104 65 166 9.81e-16 73.6
MsaG028273 AT5G40350.2 30.872 149 92 4 40 180 5 150 1.11e-15 72.0
MsaG028273 AT1G73410.2 39.252 107 49 3 9 104 6 107 1.74e-15 72.0
MsaG028273 AT5G14750.4 36.842 114 59 4 53 158 1 109 2.77e-15 70.1
MsaG028273 AT5G14750.2 36.842 114 59 4 53 158 1 109 2.77e-15 70.1
MsaG028273 AT5G11050.1 35.135 111 64 2 5 108 101 210 3.02e-15 73.9
MsaG028273 AT5G39700.1 36.441 118 66 3 2 112 49 164 4.61e-15 70.9
MsaG028273 AT3G27810.2 45.833 72 32 1 40 104 4 75 1.49e-14 68.9
MsaG028273 AT5G40360.1 37.383 107 59 2 3 102 152 257 1.78e-14 71.2
MsaG028273 AT1G71030.2 47.059 68 29 1 45 105 4 71 3.02e-14 68.6
MsaG028273 AT1G71030.1 47.059 68 29 1 45 105 18 85 3.43e-14 68.6
MsaG028273 AT2G25230.1 36.449 107 60 2 3 102 20 125 4.11e-13 66.2
MsaG028273 AT1G22640.3 46.774 62 26 1 53 107 1 62 5.13e-13 65.5
MsaG028273 AT4G00540.2 35.780 109 59 3 6 104 100 207 6.48e-13 67.0
MsaG028273 AT4G00540.1 36.111 108 58 3 7 104 99 205 8.97e-13 66.6
MsaG028273 AT3G23250.2 41.000 100 47 3 53 142 1 98 9.25e-13 65.1
MsaG028273 AT1G18960.1 34.951 103 57 3 9 104 10 109 1.11e-12 65.9
MsaG028273 AT5G40430.1 35.514 107 60 3 3 102 48 152 2.56e-11 61.6

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAATCAATGAGATT+TGG 0.252949 5:-59999194 None:intergenic
CTAATGATGTGAAGAATTAT+TGG 0.279813 5:+59999039 MsaT028273.1:CDS
TCTAAGGTTACACAAACTTC+TGG 0.313574 5:+59998876 MsaT028273.1:CDS
AAGAAGAATCAATGAGATTT+GGG 0.321143 5:-59999193 None:intergenic
ATGAAATTGATATGATTCTA+AGG 0.328127 5:+59998860 MsaT028273.1:CDS
ACAAGTATGGTGAAGGAAAA+TGG 0.332221 5:+59998638 MsaT028273.1:CDS
GTTTGTGCATCACCAACATT+TGG 0.334779 5:-59999320 None:intergenic
AAACTTTCTCTGTTGATTGC+GGG 0.342162 5:-59998829 None:intergenic
TTGATTGCTGCAAGGCTTCC+GGG 0.348445 5:+59999008 MsaT028273.1:intron
ATTGATTGCTGCAAGGCTTC+CGG 0.362167 5:+59999007 MsaT028273.1:intron
ATACACATACCTGTTCGTTT+AGG 0.382825 5:-59998670 None:intergenic
CTTGAAGCTACTAGTGTTGT+TGG 0.388628 5:-59999254 None:intergenic
TCATATATACAGGTTTGAAT+AGG 0.394658 5:+59998764 MsaT028273.1:intron
CTCTCCCACCATGTCGTAGA+TGG 0.402710 5:-59999361 None:intergenic
AAGGCTTGTATTCACAAGTA+TGG 0.409527 5:+59998625 MsaT028273.1:CDS
CTAAGGTTACACAAACTTCT+GGG 0.424688 5:+59998877 MsaT028273.1:CDS
AAGAAGAAAGGTTTGAGAAA+AGG 0.430002 5:+59998571 MsaT028273.1:CDS
GTAGTCTTGTCACACTCTCT+TGG 0.452231 5:-59999293 None:intergenic
TTTGTGCATCACCAACATTT+GGG 0.457944 5:-59999319 None:intergenic
CATTTAGTTCCTAAACGAAC+AGG 0.459270 5:+59998661 MsaT028273.1:CDS
AATCATATCAATTTCATCCT+CGG 0.486195 5:-59998854 None:intergenic
CTATGATTCTTCTTCAACCA+TGG 0.496021 5:-59999227 None:intergenic
GAAACTTTCTCTGTTGATTG+CGG 0.499376 5:-59998830 None:intergenic
GAGATTTGGGAGTGTAGACT+TGG 0.503080 5:-59999180 None:intergenic
AAAAGGTGCATGGACATATG+AGG 0.529512 5:+59998588 MsaT028273.1:CDS
TCCCACCATGTCGTAGATGG+TGG 0.542925 5:-59999358 None:intergenic
AACTTTCTCTGTTGATTGCG+GGG 0.546763 5:-59998828 None:intergenic
GTGCATATGGAGAAGAAGAA+AGG 0.547938 5:+59998559 None:intergenic
TGTATTCACAAGTATGGTGA+AGG 0.587200 5:+59998631 MsaT028273.1:CDS
CTTCTTCAAGTCATTCACCA+TGG 0.595797 5:+59999210 MsaT028273.1:CDS
AAGGTTTGAGAAAAGGTGCA+TGG 0.600200 5:+59998578 MsaT028273.1:CDS
TGAGGAAGATAATCTACTCA+AGG 0.602062 5:+59998606 MsaT028273.1:CDS
AAGACTACACTCCCAAATGT+TGG 0.603113 5:+59999308 MsaT028273.1:CDS
CCCACCATGTCGTAGATGGT+GGG 0.605457 5:-59999357 None:intergenic
ACATCATTAGCTGTCCTACC+CGG 0.608474 5:-59999026 None:intergenic
GTCGGAAAAGTTGTAGATTG+CGG 0.613773 5:+59998788 MsaT028273.1:CDS
TTGCTGCAAGGCTTCCGGGT+AGG 0.615403 5:+59999012 MsaT028273.1:intron
ATACAGGTTTGAATAGGTGT+CGG 0.617013 5:+59998770 MsaT028273.1:intron
ACAACACTAGTAGCTTCAAG+TGG 0.627477 5:+59999257 MsaT028273.1:CDS
TAAGGTTACACAAACTTCTG+GGG 0.633315 5:+59998878 MsaT028273.1:CDS
ACCCACCATCTACGACATGG+TGG 0.660714 5:+59999356 MsaT028273.1:CDS
CCCACCATCTACGACATGGT+GGG 0.665828 5:+59999357 MsaT028273.1:CDS
GGAAAAGTTGTAGATTGCGG+TGG 0.681672 5:+59998791 MsaT028273.1:CDS
ATGACCCACCATCTACGACA+TGG 0.687795 5:+59999353 MsaT028273.1:CDS
CAACAGAGAAAGTTTCGCCG+AGG 0.708057 5:+59998837 MsaT028273.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 59998565 59999391 59998565 ID=MsaG028273
Chr5 mRNA 59998565 59999391 59998565 ID=MsaT028273.1;Parent=MsaG028273
Chr5 exon 59998565 59998682 59998565 ID=MsaT028273.1.exon1;Parent=MsaT028273.1
Chr5 CDS 59998565 59998682 59998565 ID=cds.MsaT028273.1;Parent=MsaT028273.1
Chr5 exon 59998776 59998905 59998776 ID=MsaT028273.1.exon2;Parent=MsaT028273.1
Chr5 CDS 59998776 59998905 59998776 ID=cds.MsaT028273.1;Parent=MsaT028273.1
Chr5 exon 59999022 59999391 59999022 ID=MsaT028273.1.exon3;Parent=MsaT028273.1
Chr5 CDS 59999022 59999391 59999022 ID=cds.MsaT028273.1;Parent=MsaT028273.1
Gene Sequence

>MsaT028273.1

ATGGAGAAGAAGAAAGGTTTGAGAAAAGGTGCATGGACATATGAGGAAGATAATCTACTCAAGGCTTGTATTCACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTAAACGAACAGGTTTGAATAGGTGTCGGAAAAGTTGTAGATTGCGGTGGTTGAATTATTTAAACCCCGCAATCAACAGAGAAAGTTTCGCCGAGGATGAAATTGATATGATTCTAAGGTTACACAAACTTCTGGGGAACAAGCTTCCGGGTAGGACAGCTAATGATGTGAAGAATTATTGGCACACAAATCTGCGCAAAAAAGTGATTCCAAGAAAAGAAGAAAATGAAGAAAAAGAGAAATCTAAAGAAAGCATGATCAAATCTCATGAAGTTATCAAGCCTCGACCTCGAACTTTTTCCAAGTCTACACTCCCAAATCTCATTGATTCTTCTTCAAGTCATTCACCATGGTTGAAGAAGAATCATAGTTTTCCAACAACACTAGTAGCTTCAAGTGGAGATGTTAATATTCCAAGAGAGTGTGACAAGACTACACTCCCAAATGTTGGTGATGCACAAACATGTGTTATAATGACCCACCATCTACGACATGGTGGGAGAGTTTGTTGA
Protein sequence

>MsaT028273.1

MEKKKGLRKGAWTYEEDNLLKACIHKYGEGKWHLVPKRTGLNRCRKSCRLRWLNYLNPAINRESFAEDEIDMILRLHKLLGNKLPGRTANDVKNYWHTNLRKKVIPRKEENEEKEKSKESMIKSHEVIKPRPRTFSKSTLPNLIDSSSSHSPWLKKNHSFPTTLVASSGDVNIPRECDKTTLPNVGDAQTCVIMTHHLRHGGRVC*