AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG028292


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG028292 MtrunA17_Chr5g0426961 73.432 877 164 12 1 851 1 834 0.0 1249
MsaG028292 MtrunA17_Chr1g0211711 71.765 765 175 9 105 851 309 1050 0.0 1120
MsaG028292 MtrunA17_Chr1g0183311 62.626 891 272 14 1 851 12 881 0.0 1044
MsaG028292 MtrunA17_Chr1g0211661 65.643 684 194 7 123 792 209 865 0.0 909
MsaG028292 MtrunA17_Chr1g0211691 67.247 632 167 9 129 740 334 945 0.0 860
MsaG028292 MtrunA17_Chr5g0420361 63.705 664 198 14 209 847 145 790 0.0 817
MsaG028292 MtrunA17_Chr6g0472441 62.957 656 197 14 205 842 83 710 0.0 791
MsaG028292 MtrunA17_Chr7g0275771 43.881 809 344 16 133 850 136 925 0.0 637
MsaG028292 MtrunA17_Chr4g0075261 43.830 778 345 17 111 852 146 867 0.0 597
MsaG028292 MtrunA17_Chr2g0289121 45.430 733 323 13 131 849 150 819 0.0 574
MsaG028292 MtrunA17_Chr5g0448301 52.551 588 214 8 194 762 90 631 0.0 573
MsaG028292 MtrunA17_Chr1g0192011 36.156 744 402 16 137 853 267 964 5.42e-144 451
MsaG028292 MtrunA17_Chr2g0289031 52.758 417 153 5 445 849 9 393 2.16e-134 406
MsaG028292 MtrunA17_Chr2g0281051 34.330 769 426 20 137 848 207 953 9.21e-126 402
MsaG028292 MtrunA17_Chr1g0147021 41.879 511 258 11 131 636 864 1340 2.33e-118 394
MsaG028292 MtrunA17_Chr1g0147021 72.794 136 37 0 705 840 1551 1686 3.93e-58 217
MsaG028292 MtrunA17_Chr4g0048531 35.053 562 282 16 360 848 727 1278 1.82e-87 303
MsaG028292 MtrunA17_Chr4g0048531 35.632 174 105 3 137 305 260 431 1.05e-25 114
MsaG028292 MtrunA17_Chr8g0364421 50.000 252 94 4 247 497 3 223 3.23e-70 231
MsaG028292 MtrunA17_Chr1g0211701 83.621 116 19 0 738 853 4 119 2.62e-62 207
MsaG028292 MtrunA17_Chr8g0361381 52.356 191 87 1 440 630 26 212 4.28e-60 203
MsaG028292 MtrunA17_Chr7g0231061 52.308 195 74 3 487 669 1 188 4.10e-53 183
MsaG028292 MtrunA17_Chr2g0289091 73.874 111 29 0 704 814 310 420 7.09e-50 182
MsaG028292 MtrunA17_Chr2g0289091 56.557 122 53 0 515 636 20 141 1.06e-37 146
MsaG028292 MtrunA17_Chr8g0340381 61.635 159 50 4 526 684 25 172 3.49e-44 158
MsaG028292 MtrunA17_Chr8g0361391 73.864 88 22 1 705 792 51 137 2.60e-40 145
MsaG028292 MtrunA17_Chr2g0289041 38.426 216 115 6 159 369 2 204 3.94e-39 144
MsaG028292 MtrunA17_Chr8g0364411 52.212 113 52 1 137 249 33 143 3.61e-30 116
MsaG028292 MtrunA17_Chr1g0211671 72.131 61 17 0 791 851 15 75 6.18e-25 100
MsaG028292 MtrunA17_Chr2g0289101 31.944 144 78 5 259 397 3 131 1.92e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG028292 AT3G07610.1 45.325 770 331 10 136 848 154 890 0.0 656
MsaG028292 AT1G11950.1 46.730 734 328 9 133 853 189 872 0.0 651
MsaG028292 AT1G11950.3 46.730 734 328 9 133 853 189 872 0.0 651
MsaG028292 AT3G07610.3 44.066 792 331 11 136 848 154 912 0.0 646
MsaG028292 AT1G62310.1 44.966 745 350 12 104 833 179 878 0.0 627
MsaG028292 AT4G00990.1 41.592 779 360 19 137 849 80 829 0.0 560
MsaG028292 AT1G11950.2 44.495 663 305 9 133 782 189 801 0.0 547
MsaG028292 AT4G00990.3 40.247 728 340 19 137 798 80 778 7.37e-163 493
MsaG028292 AT4G00990.2 40.556 720 333 19 137 790 80 770 4.59e-162 491
MsaG028292 AT3G07610.2 43.148 540 249 7 136 625 154 685 3.70e-139 431
MsaG028292 AT1G09060.4 31.733 750 434 18 130 853 211 908 7.45e-112 365
MsaG028292 AT1G09060.3 31.733 750 434 18 130 853 211 908 7.45e-112 365
MsaG028292 AT1G09060.2 31.733 750 434 18 130 853 197 894 9.04e-112 364
MsaG028292 AT1G09060.1 31.733 750 434 18 130 853 197 894 9.04e-112 364
MsaG028292 AT4G21430.1 29.973 744 442 17 131 848 221 911 7.31e-93 313

Find 192 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATTTATTCTTAGATTT+TGG 0.128373 5:-60340372 None:intergenic
AGTGCTCTCTGAAGCATTTA+TGG 0.163893 5:-60342042 None:intergenic
GGATTTGTATATTCTTTAAA+TGG 0.213495 5:-60341247 None:intergenic
TCATATTGCTAAAGCAAAAT+TGG 0.216686 5:+60341913 MsaT028292.1:intron
CGTTGGTGGTTCTACGTTCT+TGG 0.237603 5:-60338938 None:intergenic
GATCTTCATCACGAGGATTT+AGG 0.246459 5:+60340630 MsaT028292.1:CDS
AGTACATTGCTGACAATTAC+AGG 0.278275 5:-60340684 None:intergenic
TGTCATTTCTTTGACATTGA+TGG 0.280482 5:-60339293 None:intergenic
TGTCTTGCTTAAGGTGCCTT+TGG 0.287167 5:-60341968 None:intergenic
ACTAAGTCAGAGATGTAATT+TGG 0.287365 5:-60340429 None:intergenic
GACCAAGCACAAGCCACTTT+TGG 0.295143 5:+60340773 MsaT028292.1:CDS
GATGATGATGGCCAATCTTC+TGG 0.296228 5:+60342065 MsaT028292.1:CDS
CAGCTCTTTGCGTAGATTCC+AGG 0.304385 5:+60340577 MsaT028292.1:CDS
TACCTCCAATTTGTCCTCTA+TGG 0.305460 5:-60345015 None:intergenic
TCTGGCTTTAGAACATTATC+AGG 0.310569 5:-60341304 None:intergenic
AGTACGCGCGCTCATCATTA+TGG 0.311143 5:-60339978 None:intergenic
GCTCTTGTTTGAAGCCTGTT+AGG 0.324611 5:+60340520 MsaT028292.1:CDS
GTCTTGCTTAAGGTGCCTTT+GGG 0.327340 5:-60341967 None:intergenic
TCTATGGACCTGTGATTTAC+TGG 0.329135 5:-60344999 None:intergenic
GCTCCCTCTTGTCTTGCTTA+AGG 0.329503 5:-60341977 None:intergenic
ATTCTTTAGATGGTGCTCTC+TGG 0.331445 5:+60342150 MsaT028292.1:CDS
AGCATGAGGTGCTTTGTATC+TGG 0.334250 5:-60340277 None:intergenic
AATGTGCACCAATTCTTTAC+CGG 0.348314 5:+60341100 MsaT028292.1:CDS
CAAGAAAATGGTTTGTTGGT+TGG 0.352054 5:+60342125 MsaT028292.1:CDS
CAACAAAATTCGTCGTAATA+AGG 0.352226 5:+60339149 MsaT028292.1:CDS
CGTCCATTGCTCTCCTTTAG+AGG 0.359183 5:+60342244 MsaT028292.1:CDS
CTTTCCTCAAATAAATTAGA+AGG 0.368022 5:-60341187 None:intergenic
ATGCCGGACGGTTAGATAAA+AGG 0.368269 5:-60343511 None:intergenic
GCGACGATGAAACAAGAAAA+TGG 0.376184 5:+60342113 MsaT028292.1:CDS
CCTCCTCCGCCGCGTTTGTT+CGG 0.377876 5:-60338909 None:intergenic
TTGGTTGGAGATTCTTTAGA+TGG 0.389380 5:+60342140 MsaT028292.1:CDS
AGAAGCATTTCAGAGAGTTC+AGG 0.389778 5:+60342219 MsaT028292.1:CDS
ATACGTACATGGTCAAAATC+TGG 0.391419 5:+60340315 MsaT028292.1:CDS
AGAGGACGTACCCGCATTGC+AGG 0.392255 5:+60342187 MsaT028292.1:CDS
AAGATAAACTCAAAATCAAA+TGG 0.394363 5:-60340210 None:intergenic
GCCTCCTTCTAATTTATTTG+AGG 0.400880 5:+60341183 MsaT028292.1:CDS
ATGTCATCTCTGTTCCTAAC+AGG 0.405147 5:-60340534 None:intergenic
AGGCCAATCCTGTTTATCCT+TGG 0.405342 5:-60341137 None:intergenic
TTTGACCATGTACGTATCTC+AGG 0.415385 5:-60340309 None:intergenic
TCTACCACATTTAATACGAT+TGG 0.415607 5:+60339722 MsaT028292.1:CDS
GGCCAATCCTGTTTATCCTT+GGG 0.421151 5:-60341136 None:intergenic
GGAGCTACATGGTGATAATC+AGG 0.421783 5:+60341995 MsaT028292.1:CDS
AATGTACTTGAATGTACATC+TGG 0.421952 5:+60340699 MsaT028292.1:CDS
ATATAAAATACCTTGTATCT+TGG 0.422375 5:-60339778 None:intergenic
AGCCGTTGTGGCCAACTTCT+AGG 0.422517 5:+60340177 MsaT028292.1:CDS
CGCTAAACGCAACCGTAAAA+CGG 0.424425 5:+60338963 MsaT028292.1:CDS
TTCCACCATGCAGATAATCT+TGG 0.430174 5:-60340239 None:intergenic
GAGTATTGAAATTGAAAGAT+TGG 0.430433 5:+60341161 MsaT028292.1:CDS
CCTTCAAATTTCTGACTTGG+TGG 0.430574 5:-60343724 None:intergenic
TTGTGTACCCGGTAAAGAAT+TGG 0.436382 5:-60341108 None:intergenic
TTCAGATATTCCTGCAATGC+GGG 0.438768 5:-60342197 None:intergenic
GAAAATGATTATATACACTA+TGG 0.439229 5:+60345619 MsaT028292.1:CDS
AAATTGTCCCAAGGATAAAC+AGG 0.439965 5:+60341129 MsaT028292.1:CDS
TTCTTTAGATGGTGCTCTCT+GGG 0.441915 5:+60342151 MsaT028292.1:CDS
AAGAGCTTTGAGCATATACT+TGG 0.442351 5:-60339700 None:intergenic
GAAATATGCTTCTCAGTTCA+AGG 0.451338 5:-60340404 None:intergenic
AATGTACATCTGGTTTAAGC+TGG 0.451500 5:+60340709 MsaT028292.1:CDS
TTCAAATTTCTGACTTGGTG+GGG 0.453619 5:-60343722 None:intergenic
CTTCAAATTTCTGACTTGGT+GGG 0.454550 5:-60343723 None:intergenic
AACAAAATCAAGTGCAACCT+TGG 0.456526 5:-60344922 None:intergenic
CCACCAAGTCAGAAATTTGA+AGG 0.456844 5:+60343724 MsaT028292.1:CDS
AGGCACTTGAATGCTTAGAT+TGG 0.460466 5:+60340802 MsaT028292.1:CDS
CAGGTCCATAGAGGACAAAT+TGG 0.466017 5:+60345010 MsaT028292.1:CDS
GAAACAAGAAAATGGTTTGT+TGG 0.467660 5:+60342121 MsaT028292.1:CDS
AATTCAGAAATGGCGTTGGC+GGG 0.468398 5:+60338778 None:intergenic
ATAATGATGAGCGCGCGTAC+TGG 0.472042 5:+60339980 MsaT028292.1:CDS
TCTTTCTAGAATAGCGATGT+AGG 0.474365 5:-60338882 None:intergenic
CCGAACAAACGCGGCGGAGG+AGG 0.477849 5:+60338909 MsaT028292.1:CDS
TCTAAGAATAAATGTGATCA+TGG 0.477946 5:+60340378 MsaT028292.1:CDS
TGACCTCTGAGCCAGAAGAT+TGG 0.482683 5:-60342076 None:intergenic
ACGCCGAACAAACGCGGCGG+AGG 0.483322 5:+60338906 MsaT028292.1:CDS
TCTTAATTGCATCAATACTC+AGG 0.485073 5:-60341938 None:intergenic
AAAAGAACTTGCAGATTCAA+TGG 0.485093 5:+60340461 MsaT028292.1:CDS
TGCGGAATTCCTCTGTCAAA+CGG 0.487229 5:-60344971 None:intergenic
TGTGATTTACTGGAAGTTTG+CGG 0.491065 5:-60344989 None:intergenic
ATCTTCTGGCTCAGAGGTCA+AGG 0.494381 5:+60342079 MsaT028292.1:CDS
TTCAATGGCACTGGAGCAGA+GGG 0.494515 5:+60340658 MsaT028292.1:CDS
CGATACCAACGATGATCATC+AGG 0.495954 5:+60339668 MsaT028292.1:CDS
TTACCTTCAAATTTCTGACT+TGG 0.497862 5:-60343727 None:intergenic
GAATTCAGAAATGGCGTTGG+CGG 0.503051 5:+60338777 None:intergenic
GTGTATGCTGTATTAACAAA+TGG 0.503342 5:+60339361 MsaT028292.1:CDS
TCAAATTTCTGACTTGGTGG+GGG 0.505542 5:-60343721 None:intergenic
GTCAAAGAAATGACAAAGGA+AGG 0.505650 5:+60339301 MsaT028292.1:CDS
ATTTATGGAAGAAGACAGAT+TGG 0.508793 5:-60342027 None:intergenic
ATCCAAAAGTGGCTTGTGCT+TGG 0.509797 5:-60340775 None:intergenic
TGTATATTCTTTAAATGGCA+AGG 0.512473 5:-60341242 None:intergenic
AGCTCTTTGCGTAGATTCCA+GGG 0.513640 5:+60340578 MsaT028292.1:CDS
GCAAAGGGTGTTTGAGATCA+CGG 0.514544 5:+60339523 MsaT028292.1:CDS
CATGCAGATAATCTTGGCCT+CGG 0.514765 5:-60340233 None:intergenic
AGATAAACTCAAAATCAAAT+GGG 0.515679 5:-60340209 None:intergenic
CCATGTACGTATCTCAGGTT+CGG 0.523324 5:-60340304 None:intergenic
TGTATGTAGGAATTGAGCCT+TGG 0.523387 5:+60343651 MsaT028292.1:intron
TTGCGTTTAGCGTTCGTTGG+TGG 0.527023 5:-60338952 None:intergenic
CGCAACCGTAAAACGGAAGA+AGG 0.528137 5:+60338970 MsaT028292.1:CDS
CGGTTGCGTTTAGCGTTCGT+TGG 0.531713 5:-60338955 None:intergenic
CTAGAATAGCGATGTAGGAT+AGG 0.533251 5:-60338877 None:intergenic
CTTGGGACAATTTGTGTACC+CGG 0.535581 5:-60341119 None:intergenic
ACTAACTTTACCTCCTCTAA+AGG 0.536444 5:-60342257 None:intergenic
TTAGATAAAAGGTCTGATCA+TGG 0.536799 5:-60343500 None:intergenic
ATGTGCACCAATTCTTTACC+GGG 0.551064 5:+60341101 MsaT028292.1:CDS
TGATGAAGATCTACTGCCCT+AGG 0.552902 5:-60340618 None:intergenic
TAAAAGGTCTGATCATGGAT+GGG 0.555220 5:-60343495 None:intergenic
AGACATATCACAATGGAGCT+TGG 0.555405 5:-60341392 None:intergenic
TTGCAATTACCACAACATAC+AGG 0.555718 5:-60339498 None:intergenic
GGTCTGCACCACCTAGAAGT+TGG 0.555830 5:-60340188 None:intergenic
ATAAAAGGTCTGATCATGGA+TGG 0.557609 5:-60343496 None:intergenic
AGTGCCTTAACATCCAAAAG+TGG 0.562439 5:-60340786 None:intergenic
TCTTTCAATTTCAATACTCG+AGG 0.562439 5:-60341157 None:intergenic
AGGTTGAGAGCACCTTTGAA+AGG 0.563537 5:-60341268 None:intergenic
TACGTACATGGTCAAAATCT+GGG 0.563636 5:+60340316 MsaT028292.1:CDS
GTGGTAATTGCAATTGCAAA+GGG 0.564159 5:+60339508 MsaT028292.1:CDS
TGGTCTCTCAGTCGCAGCCA+CGG 0.564180 5:-60338854 None:intergenic
CTCTGTTGCATGAGCCGTTG+TGG 0.564527 5:+60340165 MsaT028292.1:CDS
GTCCCAAGGATAAACAGGAT+TGG 0.567361 5:+60341134 MsaT028292.1:CDS
GAATATACAAATCCTTTCAA+AGG 0.567529 5:+60341256 MsaT028292.1:CDS
AGATTATCTGCATGGTGGAA+AGG 0.569015 5:+60340242 MsaT028292.1:CDS
ATGTACATCTGGTTTAAGCT+GGG 0.572127 5:+60340710 MsaT028292.1:CDS
CAACGATGATCATCAGGTTG+AGG 0.572610 5:+60339674 MsaT028292.1:CDS
ATTTGATCTTCTTCCAAGTG+AGG 0.572865 5:-60339462 None:intergenic
ATGACATACACAATAACTCA+AGG 0.573104 5:+60340550 MsaT028292.1:CDS
TTTCAATGGCACTGGAGCAG+AGG 0.573700 5:+60340657 MsaT028292.1:CDS
CACCTAGAAGTTGGCCACAA+CGG 0.581578 5:-60340179 None:intergenic
TTTGAATTCAGAAATGGCGT+TGG 0.581594 5:+60338774 None:intergenic
GTTGTTAAGGTATCCTCACT+TGG 0.581865 5:+60339449 MsaT028292.1:intron
GCTGGGAGCCGCTTGTCATG+TGG 0.582104 5:+60340727 MsaT028292.1:CDS
TCAACAACAAATGTTTGAGA+AGG 0.585736 5:+60339746 MsaT028292.1:CDS
GATATAGAAGCCAAGATACA+AGG 0.586057 5:+60339768 MsaT028292.1:CDS
GTCCATAGAGGACAAATTGG+AGG 0.587047 5:+60345013 MsaT028292.1:CDS
CAAAACATTAGAGAAAGCAT+TGG 0.588335 5:+60345652 MsaT028292.1:CDS
CTCAACCTGATGATCATCGT+TGG 0.588540 5:-60339673 None:intergenic
AGTAAATCACAGGTCCATAG+AGG 0.591019 5:+60345001 MsaT028292.1:CDS
AGCTTCTGAACAAAAGTCCA+AGG 0.591626 5:-60343668 None:intergenic
CGAGGCCAAGATTATCTGCA+TGG 0.592075 5:+60340234 MsaT028292.1:CDS
TATCAGGCAGCTTCACAGCA+AGG 0.593858 5:-60341288 None:intergenic
CAAGACAAGAGGGAGCTACA+TGG 0.594046 5:+60341984 MsaT028292.1:CDS
ACGACGGCGTCATCGTTGAA+CGG 0.597980 5:+60338820 MsaT028292.1:CDS
GCAAACTTCCAGTAAATCAC+AGG 0.600882 5:+60344991 MsaT028292.1:CDS
TGATCCAATCGTATTAAATG+TGG 0.601526 5:-60339726 None:intergenic
AAAAGGTCTGATCATGGATG+GGG 0.603357 5:-60343494 None:intergenic
GCACCTTAAGCAAGACAAGA+GGG 0.606408 5:+60341974 MsaT028292.1:CDS
TCCTCAAATAAATTAGAAGG+AGG 0.607054 5:-60341184 None:intergenic
TCTGCATGGTGGAAAGGCGG+AGG 0.608026 5:+60340248 MsaT028292.1:CDS
GAAGATCTACTGCCCTAGGA+TGG 0.610352 5:-60340614 None:intergenic
TCGAACAGCAACAGCAGCAA+CGG 0.610845 5:-60339010 None:intergenic
TAATGTTCTAAAGCCAGACA+TGG 0.612070 5:+60341309 MsaT028292.1:CDS
TCAGAGAGCACTGATGATGA+TGG 0.614655 5:+60342053 MsaT028292.1:CDS
AGATACAAAGCACCTCATGC+TGG 0.616281 5:+60340279 MsaT028292.1:CDS
AATGCACGCCACATGACAAG+CGG 0.617629 5:-60340735 None:intergenic
TCAAAGAAATGACAAAGGAA+GGG 0.618886 5:+60339302 MsaT028292.1:CDS
AATTTAACAGTGGATTGAAG+AGG 0.619121 5:+60339257 MsaT028292.1:intron
GGCACCTTAAGCAAGACAAG+AGG 0.620603 5:+60341973 MsaT028292.1:CDS
GAATAGCGATGTAGGATAGG+TGG 0.622471 5:-60338874 None:intergenic
TTGCTGTTCGAAAGAGCCAA+CGG 0.625108 5:+60339022 MsaT028292.1:CDS
GGGTGGCATGCAGATAGTAA+TGG 0.625312 5:+60340336 MsaT028292.1:CDS
CAATTAAGAAATTGACCCAA+AGG 0.625816 5:+60341952 MsaT028292.1:CDS
CACAACGGCTCATGCAACAG+AGG 0.625907 5:-60340164 None:intergenic
AAAGAAACGCCGAACAAACG+CGG 0.628072 5:+60338900 MsaT028292.1:CDS
TGGCCAATCTTCTGGCTCAG+AGG 0.629159 5:+60342073 MsaT028292.1:CDS
AATGGAACTTCAAGATGCAG+AGG 0.629339 5:+60340479 MsaT028292.1:CDS
GAACGGTTCATGCGACGCCG+TGG 0.631294 5:+60338837 MsaT028292.1:CDS
CCGAACCTGAGATACGTACA+TGG 0.634690 5:+60340304 MsaT028292.1:CDS
CCATTGCTCTCCTTTAGAGG+AGG 0.635145 5:+60342247 MsaT028292.1:CDS
CTACATGGTGATAATCAGGA+TGG 0.636072 5:+60341999 MsaT028292.1:CDS
CTTCAGATATTCCTGCAATG+CGG 0.636107 5:-60342198 None:intergenic
TATATACACTATGGTTGATG+TGG 0.641942 5:+60345628 MsaT028292.1:CDS
TGTGGTAATTGCAATTGCAA+AGG 0.644805 5:+60339507 MsaT028292.1:CDS
CCTCCTCTAAAGGAGAGCAA+TGG 0.645248 5:-60342247 None:intergenic
GAGGCATGTCCTGTATGTTG+TGG 0.650351 5:+60339489 MsaT028292.1:CDS
CGGGTACACAAATTGTCCCA+AGG 0.655726 5:+60341120 MsaT028292.1:CDS
TTTGTTTCTCCTGAAAACGT+TGG 0.656335 5:+60344939 MsaT028292.1:CDS
TTATCTGCATGGTGGAAAGG+CGG 0.658125 5:+60340245 MsaT028292.1:CDS
TTAGATGCACCACATGCCAA+CGG 0.661969 5:+60339328 MsaT028292.1:CDS
TGACATACACAATAACTCAA+GGG 0.663436 5:+60340551 MsaT028292.1:CDS
TGAGTGCTTCCGTTTGACAG+AGG 0.665002 5:+60344962 MsaT028292.1:CDS
TTCTGGCTCAGAGGTCAAGG+AGG 0.666246 5:+60342082 MsaT028292.1:CDS
AATGTTCTAAAGCCAGACAT+GGG 0.666543 5:+60341310 MsaT028292.1:CDS
GGAAGAAGATCAAATTGCTG+AGG 0.669254 5:+60339470 MsaT028292.1:CDS
TCAGGTTCGGAACCAGCATG+AGG 0.678381 5:-60340291 None:intergenic
TGGCAAGGAAGATATGAACT+CGG 0.681914 5:-60341227 None:intergenic
GCTCTTTGCGTAGATTCCAG+GGG 0.682462 5:+60340579 MsaT028292.1:CDS
GGCAGTAGATCTTCATCACG+AGG 0.683005 5:+60340623 MsaT028292.1:CDS
CAATGTCAAAGAAATGACAA+AGG 0.691997 5:+60339297 MsaT028292.1:CDS
CGTTGTGGCCAACTTCTAGG+TGG 0.692928 5:+60340180 MsaT028292.1:CDS
GGCCAAGATTATCTGCATGG+TGG 0.693766 5:+60340237 MsaT028292.1:CDS
ATGAACTCGGCACAATGACG+AGG 0.695465 5:-60341214 None:intergenic
TCATGCAACAGAGGACACAA+AGG 0.703827 5:-60340155 None:intergenic
TGAATGCTTAGATTGGTGCG+AGG 0.710757 5:+60340809 MsaT028292.1:CDS
CTGCATCAGACATATCACAA+TGG 0.714139 5:-60341399 None:intergenic
AGAAGACGACAAATTGACGA+CGG 0.719647 5:+60338804 MsaT028292.1:CDS
GAAACGCCGAACAAACGCGG+CGG 0.723125 5:+60338903 MsaT028292.1:CDS
GTACATGGTCAAAATCTGGG+TGG 0.756530 5:+60340319 MsaT028292.1:CDS
TCAATGGCACTGGAGCAGAG+GGG 0.763341 5:+60340659 MsaT028292.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 60338787 60345679 60338787 ID=MsaG028292
Chr5 mRNA 60338787 60345679 60338787 ID=MsaT028292.1;Parent=MsaG028292
Chr5 exon 60338787 60339170 60338787 ID=MsaT028292.1.exon1;Parent=MsaT028292.1
Chr5 CDS 60338787 60339170 60338787 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60339267 60339382 60339267 ID=MsaT028292.1.exon2;Parent=MsaT028292.1
Chr5 CDS 60339267 60339382 60339267 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60339458 60339557 60339458 ID=MsaT028292.1.exon3;Parent=MsaT028292.1
Chr5 CDS 60339458 60339557 60339458 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60339645 60339789 60339645 ID=MsaT028292.1.exon4;Parent=MsaT028292.1
Chr5 CDS 60339645 60339789 60339645 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60339938 60340001 60339938 ID=MsaT028292.1.exon5;Parent=MsaT028292.1
Chr5 CDS 60339938 60340001 60339938 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60340095 60340830 60340095 ID=MsaT028292.1.exon6;Parent=MsaT028292.1
Chr5 CDS 60340095 60340830 60340095 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60341091 60341420 60341091 ID=MsaT028292.1.exon7;Parent=MsaT028292.1
Chr5 CDS 60341091 60341420 60341091 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60341927 60342268 60341927 ID=MsaT028292.1.exon8;Parent=MsaT028292.1
Chr5 CDS 60341927 60342268 60341927 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60343486 60343558 60343486 ID=MsaT028292.1.exon9;Parent=MsaT028292.1
Chr5 CDS 60343486 60343558 60343486 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60343660 60343745 60343660 ID=MsaT028292.1.exon10;Parent=MsaT028292.1
Chr5 CDS 60343660 60343745 60343660 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60344915 60345034 60344915 ID=MsaT028292.1.exon11;Parent=MsaT028292.1
Chr5 CDS 60344915 60345034 60344915 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5 exon 60345614 60345679 60345614 ID=MsaT028292.1.exon12;Parent=MsaT028292.1
Chr5 CDS 60345614 60345679 60345614 ID=cds.MsaT028292.1;Parent=MsaT028292.1
Gene Sequence

>MsaT028292.1

ATGGCGTTGGCGGGAGAAGAAGACGACAAATTGACGACGGCGTCATCGTTGAACGGTTCATGCGACGCCGTGGCTGCGACTGAGAGACCACCTATCCTACATCGCTATTCTAGAAAGAAACGCCGAACAAACGCGGCGGAGGAGGATTTAACCAAGAACGTAGAACCACCAACGAACGCTAAACGCAACCGTAAAACGGAAGAAGGTGCTTCTTCTTCTTCTACCGTTGCTGCTGTTGCTGTTCGAAAGAGCCAACGGATAAGAAAAACAAACACATTTTATCTTGTTGAGTTAGGGCTTCAAGAAAAACCTAGAAAAGGAAAACAGAGTGCTCAAAATCTAAAGAATGCTGAAAAAATCAACAACAAAATTCGTCGTAATAAGTGGATTGAAGAGGAGTCTTTAATGTGCCATCAATGTCAAAGAAATGACAAAGGAAGGGTTGTTAGATGCACCACATGCCAACGGAAAAGATTTTGTGTATGCTGTATTAACAAATGGTATCCTCACTTGGAAGAAGATCAAATTGCTGAGGCATGTCCTGTATGTTGTGGTAATTGCAATTGCAAAGGGTGTTTGAGATCACGGAAACTTATCGATTCAATTAAACAAAAAGAGGACGACGATACCAACGATGATCATCAGGTTGAGGTCTCCAAGTATATGCTCAAAGCTCTTCTACCACATTTAATACGATTGGATCAACAACAAATGTTTGAGAAGGATATAGAAGCCAAGATACAAGGACGCTCACTCTCTGAGCTAAAAATTAAAGTATCAGTTCTCCATAATGATGAGCGCGCGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGATGCACAAAATGCTCTTTTGACCTTTGTGTCCTCTGTTGCATGAGCCGTTGTGGCCAACTTCTAGGTGGTGCAGACCCATTTGATTTTGAGTTTATCTTCCGAGGCCAAGATTATCTGCATGGTGGAAAGGCGGAGGAAGAAACCAGATACAAAGCACCTCATGCTGGTTCCGAACCTGAGATACGTACATGGTCAAAATCTGGGTGGCATGCAGATAGTAATGGCAATATTCCCTGTCCAAAATCTAAGAATAAATGTGATCATGGTTACCTTGAACTGAGAAGCATATTTCAGCCAAATTACATCTCTGACTTAGTATGTAAAGCAAAAGAACTTGCAGATTCAATGGAACTTCAAGATGCAGAGGAGACTCTTGATAATAGCTGCTCTTGTTTGAAGCCTGTTAGGAACAGAGATGACATACACAATAACTCAAGGGAAGCAGCTCTTTGCGTAGATTCCAGGGGCAATTTTTTGTACCATCCTAGGGCAGTAGATCTTCATCACGAGGATTTAGGACATTTTCAATGGCACTGGAGCAGAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGTCAGAAAAGCAAGACCAAGCACAAGCCACTTTTGGATGTTAAGGCACTTGAATGCTTAGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACCGGGTACACAAATTGTCCCAAGGATAAACAGGATTGGCCTCGAGTATTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTACCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATAATGTTCTAAAGCCAGACATGGGACCAAAAACATATATAGCTTATGGATTTTCTCAGGAGCTTGGACGGGGTGATTCAGTGACCAAGCTCCATTGTGATATGTCTGATGCACAAAATTGGATCCTGAGTATTGATGCAATTAAGAAATTGACCCAAAGGCACCTTAAGCAAGACAAGAGGGAGCTACATGGTGATAATCAGGATGGAGAGACCAATCTGTCTTCTTCCATAAATGCTTCAGAGAGCACTGATGATGATGGCCAATCTTCTGGCTCAGAGGTCAAGGAGGTTGATAAAGCGACGATGAAACAAGAAAATGGTTTGTTGGTTGGAGATTCTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGACGTACCCGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCACGTCCATTGCTCTCCTTTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCGTCCGGCATAAGAAAAAGCTAAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGGGATGCTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCAGAAATTTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTTTCTCCTGAAAACGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATTATATACACTATGGTTGATGTGGTCAAAACATTAGAGAAAGCATTGGTATGA

Protein sequence

>MsaT028292.1

MALAGEEDDKLTTASSLNGSCDAVAATERPPILHRYSRKKRRTNAAEEDLTKNVEPPTNAKRNRKTEEGASSSSTVAAVAVRKSQRIRKTNTFYLVELGLQEKPRKGKQSAQNLKNAEKINNKIRRNKWIEEESLMCHQCQRNDKGRVVRCTTCQRKRFCVCCINKWYPHLEEDQIAEACPVCCGNCNCKGCLRSRKLIDSIKQKEDDDTNDDHQVEVSKYMLKALLPHLIRLDQQQMFEKDIEAKIQGRSLSELKIKVSVLHNDERAYCDNCKTSIFDYHRRCTKCSFDLCVLCCMSRCGQLLGGADPFDFEFIFRGQDYLHGGKAEEETRYKAPHAGSEPEIRTWSKSGWHADSNGNIPCPKSKNKCDHGYLELRSIFQPNYISDLVCKAKELADSMELQDAEETLDNSCSCLKPVRNRDDIHNNSREAALCVDSRGNFLYHPRAVDLHHEDLGHFQWHWSRGEPVIVSNVLECTSGLSWEPLVMWRAFRQKSKTKHKPLLDVKALECLDWCEIDINVHQFFTGYTNCPKDKQDWPRVLKLKDWPPSNLFEESLPRHCAEFISSLPFKEYTNPFKGALNLAVKLPDNVLKPDMGPKTYIAYGFSQELGRGDSVTKLHCDMSDAQNWILSIDAIKKLTQRHLKQDKRELHGDNQDGETNLSSSINASESTDDDGQSSGSEVKEVDKATMKQENGLLVGDSLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPLEEVIHPIHDQTFYLTVRHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIIYTMVDVVKTLEKALV*