AlfalfaGEDB | MsaG028292

M. sativa ssp. caerulea / MsaG028292

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028292	XP_003615216.2	73.432	877	164	12	1	851	1	834	0.0	1249

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028292	sp\|Q9SSE9\|JMJ25_ARATH	45.325	770	331	10	136	848	154	890	0.0	656

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028292	tr\|G7KBD9\|G7KBD9_MEDTR	73.432	877	164	12	1	851	1	834	0.0	1249

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028292	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG028292	0.834922	4.124338e-56	1.378285e-53
MsaG000015	MsaG028292	0.822455	4.135796e-53	9.708957e-51
MsaG000030	MsaG028292	0.808245	5.795834e-50	9.487937e-48
MsaG000045	MsaG028292	0.839027	3.732245e-57	1.413317e-54
MsaG000083	MsaG028292	0.841480	8.593273e-58	3.514851e-55
MsaG000115	MsaG028292	0.882025	3.131598e-70	6.214396e-67
MsaG000127	MsaG028292	0.800773	2.060961e-48	2.835662e-46
MsaG000128	MsaG028292	0.836256	1.903257e-56	6.620196e-54
MsaG000140	MsaG028292	0.807223	9.534592e-50	1.522963e-47
MsaG000151	MsaG028292	0.804037	4.413403e-49	6.543579e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG028292	MtrunA17_Chr5g0426961	73.432	877	164	12	1	851	1	834	1249
MsaG028292	MtrunA17_Chr1g0211711	71.765	765	175	9	105	851	309	1050	1120
MsaG028292	MtrunA17_Chr1g0183311	62.626	891	272	14	1	851	12	881	1044
MsaG028292	MtrunA17_Chr1g0211661	65.643	684	194	7	123	792	209	865	909
MsaG028292	MtrunA17_Chr1g0211691	67.247	632	167	9	129	740	334	945	860
MsaG028292	MtrunA17_Chr5g0420361	63.705	664	198	14	209	847	145	790	817
MsaG028292	MtrunA17_Chr6g0472441	62.957	656	197	14	205	842	83	710	791
MsaG028292	MtrunA17_Chr7g0275771	43.881	809	344	16	133	850	136	925	637
MsaG028292	MtrunA17_Chr4g0075261	43.830	778	345	17	111	852	146	867	597
MsaG028292	MtrunA17_Chr2g0289121	45.430	733	323	13	131	849	150	819	574

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028292	AT3G07610.1	45.325	770	331	10	136	848	154	890	0.0	656
MsaG028292	AT1G11950.1	46.730	734	328	9	133	853	189	872	0.0	651
MsaG028292	AT1G11950.3	46.730	734	328	9	133	853	189	872	0.0	651
MsaG028292	AT3G07610.3	44.066	792	331	11	136	848	154	912	0.0	646
MsaG028292	AT1G62310.1	44.966	745	350	12	104	833	179	878	0.0	627
MsaG028292	AT4G00990.1	41.592	779	360	19	137	849	80	829	0.0	560
MsaG028292	AT1G11950.2	44.495	663	305	9	133	782	189	801	0.0	547
MsaG028292	AT4G00990.3	40.247	728	340	19	137	798	80	778	7.37e-163	493
MsaG028292	AT4G00990.2	40.556	720	333	19	137	790	80	770	4.59e-162	491
MsaG028292	AT3G07610.2	43.148	540	249	7	136	625	154	685	3.70e-139	431

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Find 192 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTTGCAGATTCAA+TGG	0.485093	5:+60340461	MsaT028292.1:CDS
AAAAGGTCTGATCATGGATG+GGG	0.603357	5:-60343494	None:intergenic
AAAGAAACGCCGAACAAACG+CGG	0.628072	5:+60338900	MsaT028292.1:CDS
AAATTGTCCCAAGGATAAAC+AGG	0.439965	5:+60341129	MsaT028292.1:CDS
AACAAAATCAAGTGCAACCT+TGG	0.456526	5:-60344922	None:intergenic
AAGAGCTTTGAGCATATACT+TGG	0.442351	5:-60339700	None:intergenic
AAGATAAACTCAAAATCAAA+TGG	0.394363	5:-60340210	None:intergenic
AATGCACGCCACATGACAAG+CGG	0.617629	5:-60340735	None:intergenic
AATGGAACTTCAAGATGCAG+AGG	0.629339	5:+60340479	MsaT028292.1:CDS
AATGTACATCTGGTTTAAGC+TGG	0.451500	5:+60340709	MsaT028292.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	60338787	60345679	60338787	ID=MsaG028292
Chr5	mRNA	60338787	60345679	60338787	ID=MsaT028292.1;Parent=MsaG028292
Chr5	exon	60338787	60339170	60338787	ID=MsaT028292.1.exon1;Parent=MsaT028292.1
Chr5	CDS	60338787	60339170	60338787	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60339267	60339382	60339267	ID=MsaT028292.1.exon2;Parent=MsaT028292.1
Chr5	CDS	60339267	60339382	60339267	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60339458	60339557	60339458	ID=MsaT028292.1.exon3;Parent=MsaT028292.1
Chr5	CDS	60339458	60339557	60339458	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60339645	60339789	60339645	ID=MsaT028292.1.exon4;Parent=MsaT028292.1
Chr5	CDS	60339645	60339789	60339645	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60339938	60340001	60339938	ID=MsaT028292.1.exon5;Parent=MsaT028292.1
Chr5	CDS	60339938	60340001	60339938	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60340095	60340830	60340095	ID=MsaT028292.1.exon6;Parent=MsaT028292.1
Chr5	CDS	60340095	60340830	60340095	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60341091	60341420	60341091	ID=MsaT028292.1.exon7;Parent=MsaT028292.1
Chr5	CDS	60341091	60341420	60341091	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60341927	60342268	60341927	ID=MsaT028292.1.exon8;Parent=MsaT028292.1
Chr5	CDS	60341927	60342268	60341927	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60343486	60343558	60343486	ID=MsaT028292.1.exon9;Parent=MsaT028292.1
Chr5	CDS	60343486	60343558	60343486	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60343660	60343745	60343660	ID=MsaT028292.1.exon10;Parent=MsaT028292.1
Chr5	CDS	60343660	60343745	60343660	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60344915	60345034	60344915	ID=MsaT028292.1.exon11;Parent=MsaT028292.1
Chr5	CDS	60344915	60345034	60344915	ID=cds.MsaT028292.1;Parent=MsaT028292.1
Chr5	exon	60345614	60345679	60345614	ID=MsaT028292.1.exon12;Parent=MsaT028292.1
Chr5	CDS	60345614	60345679	60345614	ID=cds.MsaT028292.1;Parent=MsaT028292.1

Gene Sequence

>MsaT028292.1

ATGGCGTTGGCGGGAGAAGAAGACGACAAATTGACGACGGCGTCATCGTTGAACGGTTCATGCGACGCCGTGGCTGCGACTGAGAGACCACCTATCCTACATCGCTATTCTAGAAAGAAACGCCGAACAAACGCGGCGGAGGAGGATTTAACCAAGAACGTAGAACCACCAACGAACGCTAAACGCAACCGTAAAACGGAAGAAGGTGCTTCTTCTTCTTCTACCGTTGCTGCTGTTGCTGTTCGAAAGAGCCAACGGATAAGAAAAACAAACACATTTTATCTTGTTGAGTTAGGGCTTCAAGAAAAACCTAGAAAAGGAAAACAGAGTGCTCAAAATCTAAAGAATGCTGAAAAAATCAACAACAAAATTCGTCGTAATAAGTGGATTGAAGAGGAGTCTTTAATGTGCCATCAATGTCAAAGAAATGACAAAGGAAGGGTTGTTAGATGCACCACATGCCAACGGAAAAGATTTTGTGTATGCTGTATTAACAAATGGTATCCTCACTTGGAAGAAGATCAAATTGCTGAGGCATGTCCTGTATGTTGTGGTAATTGCAATTGCAAAGGGTGTTTGAGATCACGGAAACTTATCGATTCAATTAAACAAAAAGAGGACGACGATACCAACGATGATCATCAGGTTGAGGTCTCCAAGTATATGCTCAAAGCTCTTCTACCACATTTAATACGATTGGATCAACAACAAATGTTTGAGAAGGATATAGAAGCCAAGATACAAGGACGCTCACTCTCTGAGCTAAAAATTAAAGTATCAGTTCTCCATAATGATGAGCGCGCGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGATGCACAAAATGCTCTTTTGACCTTTGTGTCCTCTGTTGCATGAGCCGTTGTGGCCAACTTCTAGGTGGTGCAGACCCATTTGATTTTGAGTTTATCTTCCGAGGCCAAGATTATCTGCATGGTGGAAAGGCGGAGGAAGAAACCAGATACAAAGCACCTCATGCTGGTTCCGAACCTGAGATACGTACATGGTCAAAATCTGGGTGGCATGCAGATAGTAATGGCAATATTCCCTGTCCAAAATCTAAGAATAAATGTGATCATGGTTACCTTGAACTGAGAAGCATATTTCAGCCAAATTACATCTCTGACTTAGTATGTAAAGCAAAAGAACTTGCAGATTCAATGGAACTTCAAGATGCAGAGGAGACTCTTGATAATAGCTGCTCTTGTTTGAAGCCTGTTAGGAACAGAGATGACATACACAATAACTCAAGGGAAGCAGCTCTTTGCGTAGATTCCAGGGGCAATTTTTTGTACCATCCTAGGGCAGTAGATCTTCATCACGAGGATTTAGGACATTTTCAATGGCACTGGAGCAGAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGCTTGTCATGTGGCGTGCATTTCGTCAGAAAAGCAAGACCAAGCACAAGCCACTTTTGGATGTTAAGGCACTTGAATGCTTAGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACCGGGTACACAAATTGTCCCAAGGATAAACAGGATTGGCCTCGAGTATTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTACCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCATTTAAAGAATATACAAATCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATAATGTTCTAAAGCCAGACATGGGACCAAAAACATATATAGCTTATGGATTTTCTCAGGAGCTTGGACGGGGTGATTCAGTGACCAAGCTCCATTGTGATATGTCTGATGCACAAAATTGGATCCTGAGTATTGATGCAATTAAGAAATTGACCCAAAGGCACCTTAAGCAAGACAAGAGGGAGCTACATGGTGATAATCAGGATGGAGAGACCAATCTGTCTTCTTCCATAAATGCTTCAGAGAGCACTGATGATGATGGCCAATCTTCTGGCTCAGAGGTCAAGGAGGTTGATAAAGCGACGATGAAACAAGAAAATGGTTTGTTGGTTGGAGATTCTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGACGTACCCGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCACGTCCATTGCTCTCCTTTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCGTCCGGCATAAGAAAAAGCTAAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGGGATGCTGTTTTCATTCCAGCTGGTTGCCCCCACCAAGTCAGAAATTTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTTTCTCCTGAAAACGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATTATATACACTATGGTTGATGTGGTCAAAACATTAGAGAAAGCATTGGTATGA

Protein sequence

>MsaT028292.1

MALAGEEDDKLTTASSLNGSCDAVAATERPPILHRYSRKKRRTNAAEEDLTKNVEPPTNAKRNRKTEEGASSSSTVAAVAVRKSQRIRKTNTFYLVELGLQEKPRKGKQSAQNLKNAEKINNKIRRNKWIEEESLMCHQCQRNDKGRVVRCTTCQRKRFCVCCINKWYPHLEEDQIAEACPVCCGNCNCKGCLRSRKLIDSIKQKEDDDTNDDHQVEVSKYMLKALLPHLIRLDQQQMFEKDIEAKIQGRSLSELKIKVSVLHNDERAYCDNCKTSIFDYHRRCTKCSFDLCVLCCMSRCGQLLGGADPFDFEFIFRGQDYLHGGKAEEETRYKAPHAGSEPEIRTWSKSGWHADSNGNIPCPKSKNKCDHGYLELRSIFQPNYISDLVCKAKELADSMELQDAEETLDNSCSCLKPVRNRDDIHNNSREAALCVDSRGNFLYHPRAVDLHHEDLGHFQWHWSRGEPVIVSNVLECTSGLSWEPLVMWRAFRQKSKTKHKPLLDVKALECLDWCEIDINVHQFFTGYTNCPKDKQDWPRVLKLKDWPPSNLFEESLPRHCAEFISSLPFKEYTNPFKGALNLAVKLPDNVLKPDMGPKTYIAYGFSQELGRGDSVTKLHCDMSDAQNWILSIDAIKKLTQRHLKQDKRELHGDNQDGETNLSSSINASESTDDDGQSSGSEVKEVDKATMKQENGLLVGDSLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPLEEVIHPIHDQTFYLTVRHKKKLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIIYTMVDVVKTLEKALV*