AlfalfaGEDB | MsaG028340

M. sativa ssp. caerulea / MsaG028340

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028340	XP_003616209.1	96.653	239	6	2	1	239	1	237	6.66e-169	475

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028340	sp\|Q39263\|ZFP4_ARATH	49.180	183	56	9	89	239	83	260	9.76e-42	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028340	tr\|G7KFY0\|G7KFY0_MEDTR	96.653	239	6	2	1	239	1	237	3.18e-169	475

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028340	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028340	MtrunA17_Chr5g0434121	96.653	239	6	2	1	239	1	237	6.12e-173	475
MsaG028340	MtrunA17_Chr3g0110091	57.430	249	85	8	1	239	1	238	4.23e-83	248
MsaG028340	MtrunA17_Chr1g0161901	44.231	260	107	10	4	239	6	251	3.38e-58	185
MsaG028340	MtrunA17_Chr8g0376021	44.976	209	99	6	39	239	17	217	6.14e-48	157
MsaG028340	MtrunA17_Chr2g0333741	66.234	77	18	3	88	157	80	155	1.58e-26	103
MsaG028340	MtrunA17_Chr1g0149811	32.812	256	120	11	14	239	29	262	4.73e-24	96.7
MsaG028340	MtrunA17_Chr1g0207691	38.889	144	73	5	66	205	41	173	2.83e-23	93.2
MsaG028340	MtrunA17_Chr4g0001081	47.154	123	54	3	38	158	16	129	6.20e-20	85.1
MsaG028340	MtrunA17_Chr3g0137111	41.045	134	57	5	43	155	22	154	3.15e-19	83.2
MsaG028340	MtrunA17_Chr4g0072571	64.912	57	17	1	89	145	45	98	2.00e-16	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028340	AT1G66140.1	49.180	183	56	9	89	239	83	260	9.92e-43	145
MsaG028340	AT1G24625.1	39.286	224	79	12	35	239	24	209	1.06e-31	115
MsaG028340	AT1G80730.1	60.227	88	18	2	88	158	65	152	1.91e-24	97.4
MsaG028340	AT5G25160.1	46.491	114	54	4	82	188	52	165	9.03e-24	95.9
MsaG028340	AT5G10970.1	56.098	82	29	3	82	158	95	174	1.03e-21	91.3
MsaG028340	AT5G57520.1	79.487	39	8	0	88	126	49	87	9.82e-16	72.4
MsaG028340	AT5G14010.1	69.444	36	11	0	89	124	36	71	1.16e-12	64.3
MsaG028340	AT5G01860.1	44.615	65	31	1	58	122	39	98	5.24e-11	60.8
MsaG028340	AT1G67030.1	43.038	79	33	3	71	146	18	87	5.69e-11	60.5

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Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAGAGATTCAAATTCAAT+AGG	0.312010	5:+61072706	MsaT028340.1:CDS
ACAGAATTTCATACTCACTG+AGG	0.743093	5:+61073170	MsaT028340.1:CDS
AGAGATATATCATATGAATT+AGG	0.358518	5:-61072643	None:intergenic
AGGATTTGTGATGTTGTAAA+AGG	0.238996	5:-61072623	None:intergenic
ATATGAGATTCGAGCAACAA+GGG	0.654483	5:+61073055	MsaT028340.1:CDS
ATGAGGAGTCAAAGTTAATG+TGG	0.619143	5:+61073106	MsaT028340.1:CDS
ATTTGACATTGAAACTTTGA+AGG	0.446905	5:+61073229	MsaT028340.1:CDS
CAAAGTTTCAATGTCAAATC+TGG	0.316382	5:-61073225	None:intergenic
CAAGAGATTCAAATTCAATA+GGG	0.379098	5:+61072707	MsaT028340.1:CDS
CGACAAGAATCCGGGGCGGG+TGG	0.543660	5:+61073141	MsaT028340.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	61072529	61073248	61072529	ID=MsaG028340
Chr5	mRNA	61072529	61073248	61072529	ID=MsaT028340.1;Parent=MsaG028340
Chr5	exon	61072529	61073248	61072529	ID=MsaT028340.1.exon1;Parent=MsaT028340.1
Chr5	CDS	61072529	61073248	61072529	ID=cds.MsaT028340.1;Parent=MsaT028340.1

Gene Sequence

>MsaT028340.1

ATGAAACAAAACATTGATCTTGAAGTAGAAGCTTGTGCAGAATATGAATCTGAAGTTACAAGCCAAGTTGATTCTAATGTATCAACTCAAGAAACCTTTTACAACATCACAAATCCTAATTCATATGATATATCTCTTGACTTAAGTCTAAATTTCAAGAACAGTGAGATACCAACAACAAGAGATTCAAATTCAATAGGGTTCTCACTTTCAAGCACTTCTGAGAACAGCAGCAATGAACCTGCAGCAGCAGCAACAATTCCAAGAGTTTTCTCATGCAAATACTGTCAGAGAAAGTTTTTCAGTTCTCAAGCTCTTGGTGGACACCAAAATGCACATAAAAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATGGGAATGTTTTCTGACAGGTATAATGCTAGTTTAGCATCTTTACCTTTGCATGGTTCTTTTAGGTCATTAGGGATAAAAGCACACTCTTCAATGCACTATGGTTTCTCACCAACAACAATTAGGCCTCATCATCATGAAGTGAAAACTTATATGAGATTCGAGCAACAAGGGTGTGTTGGATTTCCAATATTCTTGGAAGATGAGGAGTCAAAGTTAATGTGGCCAGGTAGTTTTCGACAAGAATCCGGGGCGGGTGGTGCTCAACAGAATTTCATACTCACTGAGGTGAATCCATGTGTAGACAGAGAAAAATCTACACCAGATTTGACATTGAAACTTTGA

Protein sequence

>MsaT028340.1

MKQNIDLEVEACAEYESEVTSQVDSNVSTQETFYNITNPNSYDISLDLSLNFKNSEIPTTRDSNSIGFSLSSTSENSSNEPAAAATIPRVFSCKYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGMFSDRYNASLASLPLHGSFRSLGIKAHSSMHYGFSPTTIRPHHHEVKTYMRFEQQGCVGFPIFLEDEESKLMWPGSFRQESGAGGAQQNFILTEVNPCVDREKSTPDLTLKL*