Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028340 | XP_003616209.1 | 96.653 | 239 | 6 | 2 | 1 | 239 | 1 | 237 | 6.66e-169 | 475 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028340 | sp|Q39263|ZFP4_ARATH | 49.180 | 183 | 56 | 9 | 89 | 239 | 83 | 260 | 9.76e-42 | 145 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028340 | tr|G7KFY0|G7KFY0_MEDTR | 96.653 | 239 | 6 | 2 | 1 | 239 | 1 | 237 | 3.18e-169 | 475 |
Gene ID | Type | Classification |
---|---|---|
MsaG028340 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028340 | MtrunA17_Chr5g0434121 | 96.653 | 239 | 6 | 2 | 1 | 239 | 1 | 237 | 6.12e-173 | 475 |
MsaG028340 | MtrunA17_Chr3g0110091 | 57.430 | 249 | 85 | 8 | 1 | 239 | 1 | 238 | 4.23e-83 | 248 |
MsaG028340 | MtrunA17_Chr1g0161901 | 44.231 | 260 | 107 | 10 | 4 | 239 | 6 | 251 | 3.38e-58 | 185 |
MsaG028340 | MtrunA17_Chr8g0376021 | 44.976 | 209 | 99 | 6 | 39 | 239 | 17 | 217 | 6.14e-48 | 157 |
MsaG028340 | MtrunA17_Chr2g0333741 | 66.234 | 77 | 18 | 3 | 88 | 157 | 80 | 155 | 1.58e-26 | 103 |
MsaG028340 | MtrunA17_Chr1g0149811 | 32.812 | 256 | 120 | 11 | 14 | 239 | 29 | 262 | 4.73e-24 | 96.7 |
MsaG028340 | MtrunA17_Chr1g0207691 | 38.889 | 144 | 73 | 5 | 66 | 205 | 41 | 173 | 2.83e-23 | 93.2 |
MsaG028340 | MtrunA17_Chr4g0001081 | 47.154 | 123 | 54 | 3 | 38 | 158 | 16 | 129 | 6.20e-20 | 85.1 |
MsaG028340 | MtrunA17_Chr3g0137111 | 41.045 | 134 | 57 | 5 | 43 | 155 | 22 | 154 | 3.15e-19 | 83.2 |
MsaG028340 | MtrunA17_Chr4g0072571 | 64.912 | 57 | 17 | 1 | 89 | 145 | 45 | 98 | 2.00e-16 | 74.3 |
MsaG028340 | MtrunA17_Chr4g0053691 | 34.884 | 172 | 81 | 8 | 41 | 208 | 25 | 169 | 7.72e-14 | 67.8 |
MsaG028340 | MtrunA17_Chr7g0255491 | 56.863 | 51 | 21 | 1 | 71 | 121 | 50 | 99 | 6.33e-12 | 63.9 |
MsaG028340 | MtrunA17_Chr7g0251581 | 69.697 | 33 | 10 | 0 | 89 | 121 | 39 | 71 | 2.56e-11 | 60.8 |
MsaG028340 | MtrunA17_Chr7g0254221 | 64.865 | 37 | 13 | 0 | 89 | 125 | 33 | 69 | 3.07e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028340 | AT1G66140.1 | 49.180 | 183 | 56 | 9 | 89 | 239 | 83 | 260 | 9.92e-43 | 145 |
MsaG028340 | AT1G24625.1 | 39.286 | 224 | 79 | 12 | 35 | 239 | 24 | 209 | 1.06e-31 | 115 |
MsaG028340 | AT1G80730.1 | 60.227 | 88 | 18 | 2 | 88 | 158 | 65 | 152 | 1.91e-24 | 97.4 |
MsaG028340 | AT5G25160.1 | 46.491 | 114 | 54 | 4 | 82 | 188 | 52 | 165 | 9.03e-24 | 95.9 |
MsaG028340 | AT5G10970.1 | 56.098 | 82 | 29 | 3 | 82 | 158 | 95 | 174 | 1.03e-21 | 91.3 |
MsaG028340 | AT5G57520.1 | 79.487 | 39 | 8 | 0 | 88 | 126 | 49 | 87 | 9.82e-16 | 72.4 |
MsaG028340 | AT5G14010.1 | 69.444 | 36 | 11 | 0 | 89 | 124 | 36 | 71 | 1.16e-12 | 64.3 |
MsaG028340 | AT5G01860.1 | 44.615 | 65 | 31 | 1 | 58 | 122 | 39 | 98 | 5.24e-11 | 60.8 |
MsaG028340 | AT1G67030.1 | 43.038 | 79 | 33 | 3 | 71 | 146 | 18 | 87 | 5.69e-11 | 60.5 |
Find 29 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGATTTGTGATGTTGTAAA+AGG | 0.238996 | 5:-61072623 | None:intergenic |
TCCTCATCTTCCAAGAATAT+TGG | 0.301130 | 5:-61073090 | None:intergenic |
ACAAGAGATTCAAATTCAAT+AGG | 0.312010 | 5:+61072706 | MsaT028340.1:CDS |
GTTTCTCACCAACAACAATT+AGG | 0.315395 | 5:+61073007 | MsaT028340.1:CDS |
CAAAGTTTCAATGTCAAATC+TGG | 0.316382 | 5:-61073225 | None:intergenic |
AGAGATATATCATATGAATT+AGG | 0.358518 | 5:-61072643 | None:intergenic |
GGAATTGTTGCTGCTGCTGC+AGG | 0.371101 | 5:-61072769 | None:intergenic |
CAAGAGATTCAAATTCAATA+GGG | 0.379098 | 5:+61072707 | MsaT028340.1:CDS |
TGTTGGATTTCCAATATTCT+TGG | 0.388274 | 5:+61073080 | MsaT028340.1:CDS |
GAATTTGAATCTCTTGTTGT+TGG | 0.420518 | 5:-61072700 | None:intergenic |
GCACACTCTTCAATGCACTA+TGG | 0.425583 | 5:+61072985 | MsaT028340.1:CDS |
TTCAGTTCTCAAGCTCTTGG+TGG | 0.434858 | 5:+61072829 | MsaT028340.1:CDS |
ATTTGACATTGAAACTTTGA+AGG | 0.446905 | 5:+61073229 | MsaT028340.1:CDS |
TATTTGCATGAGAAAACTCT+TGG | 0.472741 | 5:-61072790 | None:intergenic |
TCCAATATTCTTGGAAGATG+AGG | 0.489945 | 5:+61073089 | MsaT028340.1:CDS |
TTCGAGCAACAAGGGTGTGT+TGG | 0.505986 | 5:+61073063 | MsaT028340.1:CDS |
TTAGCATCTTTACCTTTGCA+TGG | 0.510848 | 5:+61072937 | MsaT028340.1:CDS |
TTTCGACAAGAATCCGGGGC+GGG | 0.536078 | 5:+61073138 | MsaT028340.1:CDS |
GAGTCAAAGTTAATGTGGCC+AGG | 0.539222 | 5:+61073111 | MsaT028340.1:CDS |
CTGTTGAGCACCACCCGCCC+CGG | 0.541347 | 5:-61073151 | None:intergenic |
TTGATACATTAGAATCAACT+TGG | 0.543408 | 5:-61072591 | None:intergenic |
CGACAAGAATCCGGGGCGGG+TGG | 0.543660 | 5:+61073141 | MsaT028340.1:CDS |
TGATGAGGCCTAATTGTTGT+TGG | 0.553936 | 5:-61073015 | None:intergenic |
GATTCTTGTCGAAAACTACC+TGG | 0.592240 | 5:-61073129 | None:intergenic |
ATGAGGAGTCAAAGTTAATG+TGG | 0.619143 | 5:+61073106 | MsaT028340.1:CDS |
GACCTAAAAGAACCATGCAA+AGG | 0.631354 | 5:-61072949 | None:intergenic |
ATATGAGATTCGAGCAACAA+GGG | 0.654483 | 5:+61073055 | MsaT028340.1:CDS |
TATATGAGATTCGAGCAACA+AGG | 0.660520 | 5:+61073054 | MsaT028340.1:CDS |
ACAGAATTTCATACTCACTG+AGG | 0.743093 | 5:+61073170 | MsaT028340.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 61072529 | 61073248 | 61072529 | ID=MsaG028340 |
Chr5 | mRNA | 61072529 | 61073248 | 61072529 | ID=MsaT028340.1;Parent=MsaG028340 |
Chr5 | exon | 61072529 | 61073248 | 61072529 | ID=MsaT028340.1.exon1;Parent=MsaT028340.1 |
Chr5 | CDS | 61072529 | 61073248 | 61072529 | ID=cds.MsaT028340.1;Parent=MsaT028340.1 |
Gene Sequence |
Protein sequence |