AlfalfaGEDB | MsaG028369

M. sativa ssp. caerulea / MsaG028369

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090601 GO:0090602 GO:0090603 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028369	XP_003616168.1	90.000	590	52	1	1	590	62	644	0.0	1118

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028369	sp\|A4VCM0\|NAC45_ARATH	33.598	503	225	21	2	496	63	464	1.79e-64	222

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028369	tr\|G7KFT9\|G7KFT9_MEDTR	90.000	590	52	1	1	590	62	644	0.0	1118

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG028369	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028369	MtrunA17_Chr5g0433781	90.000	590	52	1	1	590	62	644	0.0	1118
MsaG028369	MtrunA17_Chr3g0109821	60.621	612	212	18	1	589	62	667	0.0	683
MsaG028369	MtrunA17_Chr6g0481091	73.469	98	26	0	2	99	63	160	4.45e-48	167
MsaG028369	MtrunA17_Chr2g0309891	71.154	104	29	1	1	103	62	165	5.51e-45	162
MsaG028369	MtrunA17_Chr1g0201021	62.617	107	39	1	2	108	76	181	3.01e-36	143
MsaG028369	MtrunA17_Chr4g0017921	46.923	130	64	2	2	131	66	190	4.48e-36	138
MsaG028369	MtrunA17_Chr5g0400461	64.706	102	26	2	1	95	62	160	6.82e-36	137
MsaG028369	MtrunA17_Chr5g0428991	63.830	94	34	0	2	95	82	175	7.93e-35	139
MsaG028369	MtrunA17_Chr3g0092671	59.259	108	42	2	1	108	62	167	5.86e-34	135
MsaG028369	MtrunA17_Chr3g0128151	63.158	95	35	0	2	96	79	173	7.13e-34	136

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028369	AT1G65910.1	39.963	543	247	21	1	519	62	549	9.57e-105	329
MsaG028369	AT3G03200.1	33.598	503	225	21	2	496	63	464	1.82e-65	222
MsaG028369	AT5G17260.1	35.031	491	207	22	2	484	63	449	3.40e-65	221
MsaG028369	AT3G17730.1	72.449	98	27	0	2	99	63	160	4.14e-48	168
MsaG028369	AT1G54330.1	67.619	105	30	2	1	105	62	162	1.71e-38	144
MsaG028369	AT5G04410.1	60.185	108	42	1	1	108	65	171	9.47e-37	144
MsaG028369	AT3G10500.1	60.185	108	42	1	1	108	65	171	2.01e-36	143
MsaG028369	AT4G17980.1	61.616	99	34	2	1	95	62	160	9.53e-36	135
MsaG028369	AT3G10480.2	61.682	107	40	1	2	108	84	189	1.11e-35	139
MsaG028369	AT4G17980.2	61.616	99	34	2	1	95	62	160	1.64e-35	135

Showing 1 to 10 of 134 entries

Previous1 2 3 4 5…14Next

Find 140 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAGTTTACTATCG+AGG	0.634321	5:+61422945	MsaT028369.1:CDS
AAAGGTTAGTCATAGAATGT+TGG	0.457270	5:+61425735	MsaT028369.1:CDS
AAAGTAAAATCATCTTCATA+AGG	0.480913	5:-61424750	None:intergenic
AAATTATTTGATGCAAATGA+AGG	0.433232	5:+61423631	MsaT028369.1:CDS
AACACAAGATCTATAGAGAT+AGG	0.493319	5:+61424849	MsaT028369.1:CDS
AACCAAATCTGGGTATTGGA+AGG	0.600307	5:+61422869	MsaT028369.1:CDS
AACTTGGTGAAATAATGTCA+TGG	0.614916	5:-61425776	None:intergenic
AAGATGATGATAATGGAGAA+TGG	0.544768	5:+61425877	MsaT028369.1:CDS
AAGTTCAAGGCCTATGTGAT+GGG	0.501395	5:+61425916	MsaT028369.1:CDS
AATCACATGAGAGAGTCAAA+TGG	0.514617	5:+61426088	MsaT028369.1:CDS

Showing 1 to 10 of 140 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	61422804	61426239	61422804	ID=MsaG028369
Chr5	mRNA	61422804	61426239	61422804	ID=MsaT028369.1;Parent=MsaG028369
Chr5	exon	61422804	61423055	61422804	ID=MsaT028369.1.exon1;Parent=MsaT028369.1
Chr5	CDS	61422804	61423055	61422804	ID=cds.MsaT028369.1;Parent=MsaT028369.1
Chr5	exon	61423467	61423817	61423467	ID=MsaT028369.1.exon2;Parent=MsaT028369.1
Chr5	CDS	61423467	61423817	61423467	ID=cds.MsaT028369.1;Parent=MsaT028369.1
Chr5	exon	61424528	61424956	61424528	ID=MsaT028369.1.exon3;Parent=MsaT028369.1
Chr5	CDS	61424528	61424956	61424528	ID=cds.MsaT028369.1;Parent=MsaT028369.1
Chr5	exon	61425110	61425185	61425110	ID=MsaT028369.1.exon4;Parent=MsaT028369.1
Chr5	CDS	61425110	61425185	61425110	ID=cds.MsaT028369.1;Parent=MsaT028369.1
Chr5	exon	61425575	61426239	61425575	ID=MsaT028369.1.exon5;Parent=MsaT028369.1
Chr5	CDS	61425575	61426239	61425575	ID=cds.MsaT028369.1;Parent=MsaT028369.1

Gene Sequence

>MsaT028369.1

ATGGAGTGGTATTTCTTTAGCCCTCGTGATAGGAAGTACCCGAATGGATCTAGAACGAATCGTGCAACCAAATCTGGGTATTGGAAGGCAACCGGGAAGGATCGAAAAGTGAATTCTCAAGCTCGAGCAGTAGGGGTGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGCTCTCGTACAAATTGGGTTATGCATGAATATCGTCTTGATGAGAGGGAATGTGAAACCACTCCTAGCTTGCAGGATGCATATGCTCTTTGCCGTGTGATCAAGAAGAGTACAGTGATTGTGCCAAAAGTTGGAGGACAATATGGTAATATTACAGGCCATGCAAACCAGATAACAAGTGACCAATCAACAAACGTTGAGCTATACTCTGAAAGAAGGGGTGAAAATTTAGCTAGTTCAAATTATTTGATGCAAATGAAGGCTTGCTCACCTCACAATATGGTAAATGAGACTTCTCTCAATATCAATGGTACGACAAGGGATCATGGAAATTGGGCACAATTCTCATCTGAAGACCCATTATTTAGTCTTCCAACTACTTCTTCATTTACTAATTATGGAGCCATAACATACCCTCCATCCAAGGTGGATATTGCACTAGAGTGTGCAAGGATGCAACATAGGTTTACTATGCCTCCATTGGAGGTGGAGGAATTTCCTCAAGTTGGAATACCTCATGTGACACAACAAGGAAGCAGAATTACAAATGATATCTTGCAGGGAATTCTTTCACTTAATCATGCTTCTCAGGGATTGATGAATCAGTCCAGTTATTTACAAGCCTTGGATGACAATGAAAATTATGCTCCTTATGAAGATGATTTTACTTTCATGGTTGACACTAACTACAATCACATGAATGATATGAGCTCCATGGGATATGTTGACAAAACTTGGGAAGATTTGAACACAAGATCTATAGAGATAGGTGATCTAGAGGATCAAGAGTCAAAGGCCAAGCGGATGGTAGAGAATTTGAGATGGATTGGAATGCCAAGAGAAGATTTTGAAAAGATGGAAGCACAAAATGTTGTCCCAATGGAGGATATTTCATGCTACCAAACATCAAGGGAACACAATGGCATGCAAGAATATAAGCAGCACAATAACAACCTTGAACAAAATGACAATGATATCAGTGAATTCTCATGGGGATTCATCAATGATGGTGACCCCAATGAGAATTTTGTAGAAGATGGTAAAATGGACCATTACTCCAATTCTCCAAGCTTTGAGATCATTGAGGAAATAAAGGTTAGTCATAGAATGTTGGTTTCAACTCAACAAGTAGCCATGACATTATTTCACCAAGTTGTTCCTTCACAAACACTTCAAATTCAACTCAATCCAATGATGCCAAACAATAAACACTCTATAGAGAACGTAGATGCAAAGATGATGATAATGGAGAATGGAGGATCTTTCTTCATGAAGTTCAAGGCCTATGTGATGGGGAAATGGAACCTATTCAACCCATCAAAGAAAATAGCAAGTTTGGTTGTATTTGTATTTGCACTTCTTTTGATGCATCGTGTTTATTTGGAGGAAGAAGTAGAAATCTGCAAACCAAAACCAAAAAAGATGAAAGAGAAAAGAATGAGAGAATCACATGAGAGAGTCAAATGGAATGAGTCAAAAGAGGTTTGGTTTGTTGGTGTAAAATGTGAGAAAGGATTAAGTGTGGTCTTGAAGGAAATAGGCATTTTCTTCACCATATTTTTGGCGCTTTGTACCACATGGACTAGCCATGGCTAA

Protein sequence

>MsaT028369.1

MEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQARAVGVKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETTPSLQDAYALCRVIKKSTVIVPKVGGQYGNITGHANQITSDQSTNVELYSERRGENLASSNYLMQMKACSPHNMVNETSLNINGTTRDHGNWAQFSSEDPLFSLPTTSSFTNYGAITYPPSKVDIALECARMQHRFTMPPLEVEEFPQVGIPHVTQQGSRITNDILQGILSLNHASQGLMNQSSYLQALDDNENYAPYEDDFTFMVDTNYNHMNDMSSMGYVDKTWEDLNTRSIEIGDLEDQESKAKRMVENLRWIGMPREDFEKMEAQNVVPMEDISCYQTSREHNGMQEYKQHNNNLEQNDNDISEFSWGFINDGDPNENFVEDGKMDHYSNSPSFEIIEEIKVSHRMLVSTQQVAMTLFHQVVPSQTLQIQLNPMMPNNKHSIENVDAKMMIMENGGSFFMKFKAYVMGKWNLFNPSKKIASLVVFVFALLLMHRVYLEEEVEICKPKPKKMKEKRMRESHERVKWNESKEVWFVGVKCEKGLSVVLKEIGIFFTIFLALCTTWTSHG*