AlfalfaGEDB | MsaG028376

M. sativa ssp. caerulea / MsaG028376

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090601 GO:0090602 GO:0090603 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028376	XP_003616168.1	90.508	590	49	1	1	590	62	644	0.0	1121

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028376	sp\|Q9FFI5\|NAC86_ARATH	35.031	491	207	23	2	484	63	449	3.99e-64	221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028376	tr\|G7KFT9\|G7KFT9_MEDTR	90.508	590	49	1	1	590	62	644	0.0	1121

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028376	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028376	MtrunA17_Chr5g0433781	90.508	590	49	1	1	590	62	644	0.0	1121
MsaG028376	MtrunA17_Chr3g0109821	60.621	612	212	18	1	589	62	667	0.0	685
MsaG028376	MtrunA17_Chr6g0481091	73.469	98	26	0	2	99	63	160	4.10e-48	168
MsaG028376	MtrunA17_Chr2g0309891	71.154	104	29	1	1	103	62	165	5.97e-45	162
MsaG028376	MtrunA17_Chr1g0201021	62.617	107	39	1	2	108	76	181	2.95e-36	143
MsaG028376	MtrunA17_Chr4g0017921	46.923	130	64	2	2	131	66	190	4.22e-36	138
MsaG028376	MtrunA17_Chr5g0400461	64.706	102	26	2	1	95	62	160	7.60e-36	137
MsaG028376	MtrunA17_Chr5g0428991	63.830	94	34	0	2	95	82	175	7.03e-35	139
MsaG028376	MtrunA17_Chr3g0092671	59.259	108	42	2	1	108	62	167	5.70e-34	135
MsaG028376	MtrunA17_Chr3g0128151	63.158	95	35	0	2	96	79	173	6.31e-34	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028376	AT1G65910.1	40.037	542	248	20	1	519	62	549	5.94e-106	332
MsaG028376	AT5G17260.1	35.031	491	207	23	2	484	63	449	4.06e-65	221
MsaG028376	AT3G03200.1	33.267	505	224	22	2	496	63	464	4.84e-65	221
MsaG028376	AT3G17730.1	72.449	98	27	0	2	99	63	160	4.23e-48	168
MsaG028376	AT1G54330.1	67.619	105	30	2	1	105	62	162	1.83e-38	144
MsaG028376	AT3G10500.1	43.478	184	92	3	1	173	65	247	6.87e-37	145
MsaG028376	AT5G04410.1	60.185	108	42	1	1	108	65	171	9.03e-37	145
MsaG028376	AT4G17980.1	61.616	99	34	2	1	95	62	160	9.25e-36	135
MsaG028376	AT3G10480.2	61.682	107	40	1	2	108	84	189	1.16e-35	139
MsaG028376	AT4G17980.2	61.616	99	34	2	1	95	62	160	1.52e-35	135

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Find 139 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAGTTTACTATCG+AGG	0.634321	5:+61475009	MsaT028376.1:CDS
AAAGGTTAGTCATAGAATGT+TGG	0.473148	5:+61477795	MsaT028376.1:CDS
AAAGTAAAATCATCTTCATA+AGG	0.480913	5:-61476802	None:intergenic
AAATTATTTGATGCAAATGA+AGG	0.433232	5:+61475695	MsaT028376.1:CDS
AACACAAGATCTATAGAGAT+AGG	0.493319	5:+61476901	MsaT028376.1:CDS
AACCAAATCTGGGTATTGGA+AGG	0.600307	5:+61474933	MsaT028376.1:CDS
AACTTGGTGAAATAATGTCA+TGG	0.614916	5:-61477836	None:intergenic
AAGATGATGATAATGGAGAA+TGG	0.544768	5:+61477937	MsaT028376.1:CDS
AAGTTCAAGGCCTATGTGAT+GGG	0.501395	5:+61477976	MsaT028376.1:CDS
AATCACATGAGAGAGTCAAA+TGG	0.514617	5:+61478148	MsaT028376.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	61474868	61478299	61474868	ID=MsaG028376
Chr5	mRNA	61474868	61478299	61474868	ID=MsaT028376.1;Parent=MsaG028376
Chr5	exon	61474868	61475119	61474868	ID=MsaT028376.1.exon1;Parent=MsaT028376.1
Chr5	CDS	61474868	61475119	61474868	ID=cds.MsaT028376.1;Parent=MsaT028376.1
Chr5	exon	61475531	61475881	61475531	ID=MsaT028376.1.exon2;Parent=MsaT028376.1
Chr5	CDS	61475531	61475881	61475531	ID=cds.MsaT028376.1;Parent=MsaT028376.1
Chr5	exon	61476580	61477008	61476580	ID=MsaT028376.1.exon3;Parent=MsaT028376.1
Chr5	CDS	61476580	61477008	61476580	ID=cds.MsaT028376.1;Parent=MsaT028376.1
Chr5	exon	61477162	61477237	61477162	ID=MsaT028376.1.exon4;Parent=MsaT028376.1
Chr5	CDS	61477162	61477237	61477162	ID=cds.MsaT028376.1;Parent=MsaT028376.1
Chr5	exon	61477635	61478299	61477635	ID=MsaT028376.1.exon5;Parent=MsaT028376.1
Chr5	CDS	61477635	61478299	61477635	ID=cds.MsaT028376.1;Parent=MsaT028376.1

Gene Sequence

>MsaT028376.1

ATGGAGTGGTATTTCTTTAGCCCTCGTGATAGGAAGTACCCGAATGGATCTAGAACGAATCGTGCAACCAAATCTGGGTATTGGAAGGCAACCGGGAAGGATCGAAAAGTGAATTCTCAAGCTCGAGCAGTAGGGGTGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGCTCTCGTACAAATTGGGTTATGCATGAATATCGTCTTGATGAGAGGGAATGTGAAACCACTCCTAGCTTGCAGGATGCATATGCTCTTTGCCGTGTGATCAAGAAGAGTACAGTGATTGTGCCAAAAGTTGGAGGACAATATGGTAATATTACAGGCCATGCAAACCAGATAACAAGTGACCAATCAACAAACGTTGAGCTATACTCTGAAAGAAGGGGTGAAAATTTAGCTAGTTCAAATTATTTGATGCAAATGAAGGCTTGCTCACCTCACAATATGGTACATGAGACTTCTCTCAATATCAATGGTACGACAAGGGATCATGGAAATTGGGCGCAATTCTCATCTGAAGACCCATTATTTAGTCTTCCAACTACTTCGTCATTTACTAATTATGGAGCCATAACATACCCTCCATCCAAGGTGGATATTGCACTAGAGTGTGCAAGGATGCAACATAGGTTTACTATGCCTCCATTGGAGGTGGAGGAATTTCCTCAAGTTGGAATACCTCATGTGACACAACAAGGAAGCAGAATTGCAAATGATATCTTGCAGGGAATTCTTTCACTTAATCATGCTTCTCAGGGATTGATGAATCAGTCCAGTTATTTACAAGCCTTGGATGACAATGAAAATTATGCTCCTTATGAAGATGATTTTACTTTCATGGTTGACACTAACTACAATCACATGAATGATATGAGCTCCATGGGATATGTTGACAAAACTTGGGAAGATTTGAACACAAGATCTATAGAGATAGGTGATCTAGAGGATCAAGAGTCAAAGGCCAAGCGGATGGTAGAGAATTTGAGATGGATTGGAATGCCAAGAGAAGATTTTGAAAAGATGGAAGCACAAAATGTTGTCCCAATGGAGGATATTTCATGCTACCAAACATCAAGGGAACACAATGGCATGCAAGAATATGAGCGGCACAATAAGAACCTTGAACAAAATGACAATGATGTCAATGAATTCTCATGGGGATTCATCAATGATGGTGACCCCAATGAGAATTTTATAGAAGATGGAAACATGGATGATTACTCAAATTCTCCAAGCTTTGAGATCATTGAGGAGATAAAGGTTAGTCATAGAATGTTGGTTTCAACTCAACAAGTAGCCATGACATTATTTCACCAAGTTGTTCCTTCACAAACACTTCAAATTCAACTCAATCCAATGATGCCAAACAATAAACACTCTATAGAGAACGTAGATGCAAAGATGATGATAATGGAGAATGGAGGATCTTTCTTCATGAAGTTCAAGGCCTATGTGATGGGGAAATGGAACCTATTCAACCCATCAAAGAAAATAGCAAGTTTGGTTGTATTTGTATTTGCACTTCTTTTGATGCATCGTGTTTATTTGGAGGAAGAAGTAGAAATCTGCAAACCAAAACCAAAAAAGATGAAAGAGAAAAGAATGAGAGAATCACATGAGAGAGTCAAATGGAATGAGTCAAAAGAGGTTTGGTTTGTTGGTGTAAAATGTGAGAAAGGATTAAGTGTGGTCTTGAAGGAAATAAGCATTTTCTTCACCATATTTTTGGCGCTTTGTACCACATGGGCTAGCCATGGCTAA

Protein sequence

>MsaT028376.1

MEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQARAVGVKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETTPSLQDAYALCRVIKKSTVIVPKVGGQYGNITGHANQITSDQSTNVELYSERRGENLASSNYLMQMKACSPHNMVHETSLNINGTTRDHGNWAQFSSEDPLFSLPTTSSFTNYGAITYPPSKVDIALECARMQHRFTMPPLEVEEFPQVGIPHVTQQGSRIANDILQGILSLNHASQGLMNQSSYLQALDDNENYAPYEDDFTFMVDTNYNHMNDMSSMGYVDKTWEDLNTRSIEIGDLEDQESKAKRMVENLRWIGMPREDFEKMEAQNVVPMEDISCYQTSREHNGMQEYERHNKNLEQNDNDVNEFSWGFINDGDPNENFIEDGNMDDYSNSPSFEIIEEIKVSHRMLVSTQQVAMTLFHQVVPSQTLQIQLNPMMPNNKHSIENVDAKMMIMENGGSFFMKFKAYVMGKWNLFNPSKKIASLVVFVFALLLMHRVYLEEEVEICKPKPKKMKEKRMRESHERVKWNESKEVWFVGVKCEKGLSVVLKEISIFFTIFLALCTTWASHG*