AlfalfaGEDB | MsaG028440

M. sativa ssp. caerulea / MsaG028440

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028440	XP_003616115.1	94.866	857	10	2	1	839	1	841	0.0	1657

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028440	sp\|Q9FGV1\|ARFH_ARATH	66.508	842	210	16	1	810	1	802	0.0	1043

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028440	tr\|G7KFN6\|G7KFN6_MEDTR	94.866	857	10	2	1	839	1	841	0.0	1657

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TFs/TRs:

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Gene ID	Type	Classification
MsaG028440	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000117	MsaG028440	0.805525	2.164669e-49	3.322002e-47
MsaG000292	MsaG028440	0.807074	1.024879e-49	1.631320e-47
MsaG000366	MsaG028440	0.815657	1.431578e-51	2.813843e-49
MsaG000530	MsaG028440	0.809350	3.371979e-50	5.668505e-48
MsaG000643	MsaG028440	0.818624	3.104667e-52	6.585623e-50
MsaG000690	MsaG028440	0.808144	6.088276e-50	9.942272e-48
MsaG000760	MsaG028440	0.806482	1.365237e-49	2.143054e-47
MsaG000795	MsaG028440	0.817014	7.141378e-52	1.453223e-49
MsaG001010	MsaG028440	0.842484	4.678982e-58	1.976307e-55
MsaG001011	MsaG028440	0.834894	4.190868e-56	1.399379e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028440	MtrunA17_Chr5g0433301	94.866	857	10	2	1	839	1	841	0.0	1657
MsaG028440	MtrunA17_Chr3g0109391	78.711	869	135	14	1	839	1	849	0.0	1300
MsaG028440	MtrunA17_Chr2g0285461	56.835	929	290	20	1	839	1	908	0.0	895
MsaG028440	MtrunA17_Chr8g0376771	72.745	510	93	9	1	488	1	486	0.0	716
MsaG028440	MtrunA17_Chr4g0070181	67.969	384	101	7	16	397	15	378	1.13e-163	505
MsaG028440	MtrunA17_Chr4g0070181	50.459	109	54	0	693	801	974	1082	2.63e-29	125
MsaG028440	MtrunA17_Chr1g0156321	65.013	383	114	4	16	397	35	398	2.29e-163	496
MsaG028440	MtrunA17_Chr1g0156321	41.060	151	71	3	668	818	727	859	5.79e-26	114
MsaG028440	MtrunA17_Chr2g0301251	66.841	383	105	7	1	382	1	362	1.24e-160	497
MsaG028440	MtrunA17_Chr2g0301251	59.341	91	37	0	715	805	988	1078	8.43e-30	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028440	AT5G37020.1	66.508	842	210	16	1	810	1	802	0.0	1043
MsaG028440	AT5G37020.2	66.667	813	199	16	1	781	1	773	0.0	1003
MsaG028440	AT5G37020.3	63.893	745	199	15	98	810	1	707	0.0	860
MsaG028440	AT1G19220.1	62.559	422	131	10	1	420	1	397	2.37e-161	498
MsaG028440	AT1G19220.1	55.446	101	45	0	715	815	960	1060	1.75e-29	127
MsaG028440	AT1G19850.2	50.388	516	210	10	11	510	30	515	9.11e-154	473
MsaG028440	AT1G19850.2	53.684	95	44	0	715	809	784	878	2.18e-26	116
MsaG028440	AT1G19850.1	50.388	516	210	10	11	510	41	526	9.79e-154	473
MsaG028440	AT1G19850.1	53.684	95	44	0	715	809	795	889	2.10e-26	116
MsaG028440	AT5G20730.2	59.719	427	139	10	4	425	5	403	4.25e-153	479

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Find 213 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGATTTCATAGATTC+AGG	0.326405	5:+62565160	MsaT028440.1:CDS
AAACGACACCTTCTTACCAC+AGG	0.613976	5:+62561618	MsaT028440.1:CDS
AAAGATTCTCCGCCAAGCCT+TGG	0.484860	5:-62565000	None:intergenic
AACAAATACACTCCAGCCTG+TGG	0.623923	5:-62561634	None:intergenic
AACAGTCACCTCAACAATCA+TGG	0.424537	5:+62565296	MsaT028440.1:CDS
AACATCAGGAATGAGTCAGC+AGG	0.513653	5:+62557613	MsaT028440.1:CDS
AACTAGAGTGTTGCTTCTGA+TGG	0.464826	5:-62565117	None:intergenic
AAGATCCTCTTAGATCAGGC+TGG	0.555768	5:+62565854	MsaT028440.1:CDS
AAGGGAATGTAGATCTATTA+AGG	0.311704	5:+62564849	MsaT028440.1:CDS
AAGGTGCTGGATTGTTGCCC+TGG	0.429616	5:+62564738	MsaT028440.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	62557602	62566467	62557602	ID=MsaG028440
Chr5	mRNA	62557602	62566467	62557602	ID=MsaT028440.1;Parent=MsaG028440
Chr5	exon	62557602	62557644	62557602	ID=MsaT028440.1.exon1;Parent=MsaT028440.1
Chr5	CDS	62557602	62557644	62557602	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62557985	62558100	62557985	ID=MsaT028440.1.exon2;Parent=MsaT028440.1
Chr5	CDS	62557985	62558100	62557985	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62558295	62558393	62558295	ID=MsaT028440.1.exon3;Parent=MsaT028440.1
Chr5	CDS	62558295	62558393	62558295	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62558502	62558558	62558502	ID=MsaT028440.1.exon4;Parent=MsaT028440.1
Chr5	CDS	62558502	62558558	62558502	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62558647	62558802	62558647	ID=MsaT028440.1.exon5;Parent=MsaT028440.1
Chr5	CDS	62558647	62558802	62558647	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62558885	62558969	62558885	ID=MsaT028440.1.exon6;Parent=MsaT028440.1
Chr5	CDS	62558885	62558969	62558885	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62561610	62561700	62561610	ID=MsaT028440.1.exon7;Parent=MsaT028440.1
Chr5	CDS	62561610	62561700	62561610	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62561796	62561960	62561796	ID=MsaT028440.1.exon8;Parent=MsaT028440.1
Chr5	CDS	62561796	62561960	62561796	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62562046	62562166	62562046	ID=MsaT028440.1.exon9;Parent=MsaT028440.1
Chr5	CDS	62562046	62562166	62562046	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62563590	62563715	62563590	ID=MsaT028440.1.exon10;Parent=MsaT028440.1
Chr5	CDS	62563590	62563715	62563590	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62564237	62564384	62564237	ID=MsaT028440.1.exon11;Parent=MsaT028440.1
Chr5	CDS	62564237	62564384	62564237	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62564711	62565654	62564711	ID=MsaT028440.1.exon12;Parent=MsaT028440.1
Chr5	CDS	62564711	62565654	62564711	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62565745	62565935	62565745	ID=MsaT028440.1.exon13;Parent=MsaT028440.1
Chr5	CDS	62565745	62565935	62565745	ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5	exon	62566290	62566467	62566290	ID=MsaT028440.1.exon14;Parent=MsaT028440.1
Chr5	CDS	62566290	62566467	62566290	ID=cds.MsaT028440.1;Parent=MsaT028440.1

Gene Sequence

>MsaT028440.1

ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGTCATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCTCTACCAACTTCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACCAACAGAGAAATTGATGGACAAATACCGAATTATCCTAGCTTGCCGCCTCAGTTGATATGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAGATGACGCTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTAGGGATTCCAAGTAAGCAGCCTACAAATTATTTTTGCAAGACATTGACGGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTCCGAGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCAAAAAGACTAGTAGCTGGTGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAGTAGGCCACAAACTGTTATGCCATCATCAGTTCTTTCAAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCAGCACATGCTGCAGCAACTAATAGCTGCTTTACGGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTCTCAAAATATATCAAAGCTGTGTACCATACACGCGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCAGCACTATACTATATTCCCTCTACTTATGCATGTGCCACCTTGTTTGTGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCAAATTCTCATTGGAGGTCTGTTAAGGTTGGTTGGGATGAATCGACAGCTGGGGAGAGACAGCCACGGGTATCGTTATGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTAGATTGAAACGACCATGGCATCCTGGCACTTCTTCTTTTCTTGACCATGGTCTTAATTCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCCAAGACTCGATCCAACTTTGCTCGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCTGCTGCTGGTTTGCAGAACCAAGGGAATGTAGATCTATTAAGGCAACAGATGATGAATTTTCAACAGCCTTTCAATTATCAACAATCAGGAAACCTCAGTCCTATGCAGCTACAGCAACAGCAAGCAATTCAACAATCCGTGTCGACTAATAATATTATGCAACCACAAGGCCAAGGCTTGGCGGAGAATCTTTCTCAGCACATCCTTCAGAAATCGCACAACAATCGTGAAAACCAAACACAGCAACAAAGTTATCAAGATTCAGTTTTAATTCAAGGTGATCCGCTCCATCAGAAGCAACACTCTAGTTTGCCTTCACCGTCATACTCAAAACCAGATTTCATAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCACCGGGTCAAAACATGCTTGGTTCACTTTCTTCTGAAGGGAGTGGCAATCTGTTGAATTTATCCAGAAGTGGTCATTCTATGCTGACTGAACAGTCACCTCAACAATCATGGGCCTCAAAGTATTCACCTTCGCAGGTCGATGCCATTGGAAATTCGATGTCGCATGTGCAGTATTCCGGAAGAGATACATCAATCGTACAACCACATGGCAACTCAGATGCCCAAAATTCGGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCCCGTTATACTACTGCATCAGCTCATGCCGATGCATCGACAATGCCGCTAGGGGAATCTAGTTTCCAGGGTTCTCCATATCCTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAAGTTGATGCGCAAAACCAGACACCGATATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCACTTGACATCTCGCGGTTCAACAGCTATCACGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCTCCTGAAGATATTCAGAAAATGGGAGAAGAAGCCATAGAATCCCTTGGTCCAAGTTCTGGACAAAGGATGAACAACGCTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTTGAATACTGA

Protein sequence

>MsaT028440.1

MKLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVQHYTIFPLLMHVPPCLCRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDHGLNSMNFQGAGLLPWMQPRLDPTLLGNDHNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYQQSGNLSPMQLQQQQAIQQSVSTNNIMQPQGQGLAENLSQHILQKSHNNRENQTQQQSYQDSVLIQGDPLHQKQHSSLPSPSYSKPDFIDSGMKFAASVSPGQNMLGSLSSEGSGNLLNLSRSGHSMLTEQSPQQSWASKYSPSQVDAIGNSMSHVQYSGRDTSIVQPHGNSDAQNSVLFGVNIDSSGLLLPTTVPRYTTASAHADASTMPLGESSFQGSPYPCMQDSSELLQSAGQVDAQNQTPIFVKVYKSGSVGRSLDISRFNSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAIESLGPSSGQRMNNAGAESHDIVSGLPSLGSLEY*