AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG028440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG028440 MtrunA17_Chr5g0433301 94.866 857 10 2 1 839 1 841 0.0 1657
MsaG028440 MtrunA17_Chr3g0109391 78.711 869 135 14 1 839 1 849 0.0 1300
MsaG028440 MtrunA17_Chr2g0285461 56.835 929 290 20 1 839 1 908 0.0 895
MsaG028440 MtrunA17_Chr8g0376771 72.745 510 93 9 1 488 1 486 0.0 716
MsaG028440 MtrunA17_Chr4g0070181 67.969 384 101 7 16 397 15 378 1.13e-163 505
MsaG028440 MtrunA17_Chr4g0070181 50.459 109 54 0 693 801 974 1082 2.63e-29 125
MsaG028440 MtrunA17_Chr1g0156321 65.013 383 114 4 16 397 35 398 2.29e-163 496
MsaG028440 MtrunA17_Chr1g0156321 41.060 151 71 3 668 818 727 859 5.79e-26 114
MsaG028440 MtrunA17_Chr2g0301251 66.841 383 105 7 1 382 1 362 1.24e-160 497
MsaG028440 MtrunA17_Chr2g0301251 59.341 91 37 0 715 805 988 1078 8.43e-30 127
MsaG028440 MtrunA17_Chr8g0389081 65.574 366 105 4 16 377 21 369 3.58e-148 464
MsaG028440 MtrunA17_Chr8g0389081 63.218 87 32 0 715 801 987 1073 1.71e-30 129
MsaG028440 MtrunA17_Chr2g0276781 51.762 369 153 5 15 380 14 360 2.23e-120 379
MsaG028440 MtrunA17_Chr2g0276781 37.931 87 52 2 716 801 550 635 5.64e-14 75.9
MsaG028440 MtrunA17_Chr8g0385791 49.616 391 174 5 6 396 43 410 2.81e-119 380
MsaG028440 MtrunA17_Chr8g0385791 44.828 87 46 2 716 801 713 798 9.39e-16 82.0
MsaG028440 MtrunA17_Chr8g0346711 45.519 424 197 8 3 413 8 410 3.18e-114 363
MsaG028440 MtrunA17_Chr8g0346711 41.772 79 44 1 723 801 569 645 5.44e-14 75.9
MsaG028440 MtrunA17_Chr4g0029671 44.626 428 208 8 24 440 54 463 3.27e-109 353
MsaG028440 MtrunA17_Chr4g0029671 43.678 87 47 2 716 801 666 751 1.61e-17 87.4
MsaG028440 MtrunA17_Chr2g0326281 46.265 415 170 10 24 403 56 452 7.74e-108 350
MsaG028440 MtrunA17_Chr2g0326281 35.971 139 82 4 668 801 647 783 2.75e-19 93.2
MsaG028440 MtrunA17_Chr4g0009751 48.670 376 171 7 20 393 15 370 8.46e-108 344
MsaG028440 MtrunA17_Chr7g0239061 45.658 403 197 8 16 416 6 388 3.36e-107 344
MsaG028440 MtrunA17_Chr7g0239061 41.772 79 44 1 723 801 581 657 3.09e-14 76.6
MsaG028440 MtrunA17_Chr4g0046371 45.663 392 171 7 15 392 31 394 1.28e-104 338
MsaG028440 MtrunA17_Chr2g0282961 45.169 414 169 9 20 411 51 428 2.13e-104 335
MsaG028440 MtrunA17_Chr2g0326761 38.902 437 195 10 18 412 5 411 7.50e-83 280
MsaG028440 MtrunA17_Chr1g0199681 38.177 406 190 8 14 382 84 465 6.54e-80 271
MsaG028440 MtrunA17_Chr4g0028971 37.194 449 210 9 17 418 5 428 4.59e-78 267
MsaG028440 MtrunA17_Chr1g0181211 33.907 407 203 5 18 380 21 405 6.56e-70 244
MsaG028440 MtrunA17_Chr3g0115271 34.815 405 208 6 21 392 16 397 5.09e-64 226
MsaG028440 MtrunA17_Chr7g0264171 33.735 415 200 9 19 383 26 415 8.49e-63 223
MsaG028440 MtrunA17_Chr5g0424931 33.584 399 210 10 21 393 16 385 1.56e-57 206
MsaG028440 MtrunA17_Chr7g0264161 35.692 325 182 6 33 354 1 301 2.98e-57 198
MsaG028440 MtrunA17_Chr5g0417281 30.886 395 232 9 21 409 8 367 9.60e-54 195
MsaG028440 MtrunA17_Chr5g0436761 32.891 377 215 10 17 387 5 349 2.89e-52 189
MsaG028440 MtrunA17_Chr8g0356211 39.506 243 123 5 136 376 2 222 4.34e-51 181
MsaG028440 MtrunA17_Chr1g0178011 30.867 392 231 12 19 403 7 365 3.90e-48 177
MsaG028440 MtrunA17_Chr2g0289221 32.749 342 179 13 24 354 20 321 3.47e-42 157
MsaG028440 MtrunA17_Chr2g0277461 30.352 369 219 11 24 387 13 348 2.24e-41 158
MsaG028440 MtrunA17_Chr5g0417211 29.714 350 186 10 21 354 9 314 8.45e-39 149
MsaG028440 MtrunA17_Chr5g0424741 27.461 386 224 11 21 374 9 370 7.09e-36 143
MsaG028440 MtrunA17_Chr5g0425661 35.437 206 121 3 23 224 36 233 9.23e-34 130
MsaG028440 MtrunA17_Chr5g0424801 29.096 354 224 9 21 374 9 335 1.67e-33 133
MsaG028440 MtrunA17_Chr5g0425261 29.096 354 224 9 21 374 9 335 2.12e-32 129
MsaG028440 MtrunA17_Chr2g0277531 28.834 326 182 13 24 337 20 307 1.30e-31 126
MsaG028440 MtrunA17_Chr5g0419811 44.928 138 53 2 577 691 27 164 6.34e-26 105
MsaG028440 MtrunA17_Chr1g0156301 38.462 104 48 1 715 818 179 266 2.08e-16 80.5
MsaG028440 MtrunA17_Chr5g0424791 34.868 152 84 6 76 224 12 151 1.64e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG028440 AT5G37020.1 66.508 842 210 16 1 810 1 802 0.0 1043
MsaG028440 AT5G37020.2 66.667 813 199 16 1 781 1 773 0.0 1003
MsaG028440 AT5G37020.3 63.893 745 199 15 98 810 1 707 0.0 860
MsaG028440 AT1G19220.1 62.559 422 131 10 1 420 1 397 2.37e-161 498
MsaG028440 AT1G19220.1 55.446 101 45 0 715 815 960 1060 1.75e-29 127
MsaG028440 AT1G19850.2 50.388 516 210 10 11 510 30 515 9.11e-154 473
MsaG028440 AT1G19850.2 53.684 95 44 0 715 809 784 878 2.18e-26 116
MsaG028440 AT1G19850.1 50.388 516 210 10 11 510 41 526 9.79e-154 473
MsaG028440 AT1G19850.1 53.684 95 44 0 715 809 795 889 2.10e-26 116
MsaG028440 AT5G20730.2 59.719 427 139 10 4 425 5 403 4.25e-153 479
MsaG028440 AT5G20730.2 35.887 248 130 7 582 801 879 1125 3.56e-29 125
MsaG028440 AT5G20730.3 59.579 428 139 11 4 425 5 404 1.93e-151 474
MsaG028440 AT5G20730.3 35.887 248 130 7 582 801 880 1126 2.99e-29 126
MsaG028440 AT5G20730.1 59.579 428 139 11 4 425 5 404 4.79e-151 473
MsaG028440 AT5G20730.1 35.887 248 130 7 582 801 880 1126 4.16e-29 125
MsaG028440 AT5G62000.2 51.989 377 160 4 20 396 57 412 3.70e-125 397
MsaG028440 AT5G62000.2 41.414 99 53 3 707 801 724 821 2.74e-15 80.9
MsaG028440 AT5G62000.5 51.989 377 160 4 20 396 57 412 3.70e-125 397
MsaG028440 AT5G62000.5 41.414 99 53 3 707 801 724 821 2.74e-15 80.9
MsaG028440 AT5G62000.3 51.989 377 160 4 20 396 57 412 3.70e-125 397
MsaG028440 AT5G62000.3 41.414 99 53 3 707 801 724 821 2.74e-15 80.9
MsaG028440 AT5G62000.1 51.989 377 160 4 20 396 57 412 3.70e-125 397
MsaG028440 AT5G62000.1 41.414 99 53 3 707 801 724 821 2.74e-15 80.9
MsaG028440 AT5G62000.4 51.989 377 160 4 20 396 57 412 4.33e-125 397
MsaG028440 AT5G62000.4 41.414 99 53 3 707 801 724 821 2.75e-15 80.9
MsaG028440 AT1G59750.4 49.500 400 176 6 8 400 1 381 1.10e-118 374
MsaG028440 AT1G59750.4 39.080 87 51 2 716 801 540 625 2.40e-14 77.4
MsaG028440 AT1G59750.2 49.500 400 176 6 8 400 1 381 1.29e-118 374
MsaG028440 AT1G59750.2 39.080 87 51 2 716 801 542 627 2.42e-14 77.4
MsaG028440 AT1G59750.1 49.626 401 174 7 8 400 1 381 1.30e-118 374
MsaG028440 AT1G59750.1 39.080 87 51 2 716 801 545 630 2.23e-14 77.8
MsaG028440 AT1G59750.3 49.626 401 174 7 8 400 1 381 1.30e-118 374
MsaG028440 AT1G59750.3 39.080 87 51 2 716 801 545 630 2.23e-14 77.8
MsaG028440 AT5G60450.2 49.616 391 167 7 14 394 31 401 5.95e-115 367
MsaG028440 AT5G60450.2 42.391 92 51 2 714 804 642 732 9.52e-19 92.0
MsaG028440 AT5G60450.1 50.260 384 161 7 21 394 62 425 2.75e-114 367
MsaG028440 AT5G60450.1 42.391 92 51 2 714 804 666 756 1.05e-18 91.7
MsaG028440 AT3G61830.1 46.387 429 197 11 21 438 22 428 2.68e-112 356
MsaG028440 AT3G61830.1 41.772 79 44 1 723 801 500 576 1.82e-12 71.2
MsaG028440 AT2G46530.1 48.518 371 168 7 15 384 12 360 3.39e-110 350
MsaG028440 AT2G46530.1 36.364 99 60 2 709 806 486 582 2.14e-12 71.2
MsaG028440 AT2G46530.3 48.518 371 168 7 15 384 33 381 8.18e-110 350
MsaG028440 AT2G46530.3 36.364 99 60 2 709 806 507 603 2.72e-12 70.9
MsaG028440 AT2G33860.1 46.381 373 156 7 16 375 48 389 1.68e-104 335
MsaG028440 AT4G23980.1 45.411 414 186 10 12 416 2 384 1.47e-102 331
MsaG028440 AT4G23980.1 32.335 167 96 7 644 801 452 610 1.27e-14 78.6
MsaG028440 AT4G23980.2 46.547 391 169 10 12 393 2 361 3.22e-100 325
MsaG028440 AT4G23980.2 32.335 167 96 7 644 801 450 608 1.21e-14 78.6
MsaG028440 AT3G61830.2 45.226 398 185 11 52 438 2 377 2.67e-96 312
MsaG028440 AT3G61830.2 41.772 79 44 1 723 801 449 525 1.55e-12 71.6
MsaG028440 AT1G34410.1 40.302 397 199 8 12 400 15 381 1.25e-85 285
MsaG028440 AT1G35540.1 40.599 367 183 7 16 377 19 355 3.70e-83 278
MsaG028440 AT1G35540.1 32.407 108 68 3 697 801 492 597 2.77e-11 67.8
MsaG028440 AT1G34310.1 40.576 382 192 7 16 392 19 370 4.05e-83 278
MsaG028440 AT1G35240.1 40.052 382 194 7 16 392 19 370 4.71e-83 278
MsaG028440 AT1G35520.1 39.898 391 197 8 18 400 21 381 7.78e-81 272
MsaG028440 AT2G33860.2 52.016 248 102 2 128 375 2 232 1.77e-79 264
MsaG028440 AT1G34170.1 40.608 362 186 8 18 376 19 354 1.79e-79 266
MsaG028440 AT4G30080.1 37.415 441 192 14 14 403 9 416 6.12e-79 269
MsaG028440 AT2G28350.2 37.923 414 178 10 17 380 3 387 7.55e-78 266
MsaG028440 AT2G28350.1 37.923 414 178 10 17 380 3 387 1.73e-77 265
MsaG028440 AT1G34390.1 39.695 393 197 9 16 400 19 379 1.34e-76 261
MsaG028440 AT2G46530.2 48.302 265 117 4 120 384 29 273 7.61e-76 256
MsaG028440 AT2G46530.2 36.364 99 60 2 709 806 399 495 1.40e-12 71.6
MsaG028440 AT1G34170.2 37.569 362 171 7 18 376 19 328 2.95e-69 237
MsaG028440 AT1G34170.3 37.569 362 171 7 18 376 19 328 1.73e-68 237
MsaG028440 AT1G30330.3 42.105 304 133 6 567 838 619 911 1.49e-55 207
MsaG028440 AT1G30330.2 42.105 304 133 6 567 838 619 911 1.49e-55 207
MsaG028440 AT1G30330.1 42.105 304 133 6 567 838 617 909 1.93e-55 207
MsaG028440 AT1G77850.1 31.910 445 239 12 21 429 16 432 7.39e-54 197
MsaG028440 AT1G77850.2 31.910 445 239 12 21 429 16 432 9.48e-54 197
MsaG028440 AT1G43950.1 42.396 217 107 5 16 227 19 222 4.32e-48 170

Find 213 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCAAACAGAACCGAATTT+TGG 0.113347 5:-62565429 None:intergenic
ACGTTTCTTCCTATGGAATT+AGG 0.126366 5:+62558662 MsaT028440.1:CDS
CCCAAAATTCGGTTCTGTTT+GGG 0.156853 5:+62565428 MsaT028440.1:CDS
TTTCTGTCGGTATGCGTTTC+AGG 0.158049 5:+62562111 MsaT028440.1:CDS
TCCTGAAGATATTCAGAAAA+TGG 0.166038 5:+62566329 MsaT028440.1:CDS
GAATCTCACGACATTGTTTC+TGG 0.168594 5:+62566414 MsaT028440.1:CDS
TGAAAAGAATCAGCTTCTTT+TGG 0.219750 5:+62561799 MsaT028440.1:CDS
ACAGACCTCCAATGAGAATT+TGG 0.247430 5:-62563689 None:intergenic
CGTTTCTTCCTATGGAATTA+GGG 0.270900 5:+62558663 MsaT028440.1:CDS
GCCATGGTCGTTTCAATCTA+AGG 0.278500 5:-62564338 None:intergenic
TTAGTTTCTCTACCAACTTC+AGG 0.304112 5:+62558038 MsaT028440.1:CDS
AAGGGAATGTAGATCTATTA+AGG 0.311704 5:+62564849 MsaT028440.1:CDS
GAATCCCTTGGTCCAAGTTC+TGG 0.311816 5:+62566366 MsaT028440.1:CDS
TACATTGGAAATGTAGTTAA+AGG 0.316141 5:-62564300 None:intergenic
ATGTCGCATGTGCAGTATTC+CGG 0.318047 5:+62565364 MsaT028440.1:CDS
AAACCAGATTTCATAGATTC+AGG 0.326405 5:+62565160 MsaT028440.1:CDS
GATAACTTTGTTGCTGTGTT+TGG 0.334518 5:-62565063 None:intergenic
TACGATTGATGTATCTCTTC+CGG 0.336305 5:-62565383 None:intergenic
GAATCTTGCATGCAAGGATA+TGG 0.339276 5:-62565568 None:intergenic
GCTAGGGGAATCTAGTTTCC+AGG 0.341249 5:+62565540 MsaT028440.1:CDS
CAGCATAGAATGACCACTTC+TGG 0.341347 5:-62565269 None:intergenic
GCCCAAAATTCGGTTCTGTT+TGG 0.347450 5:+62565427 MsaT028440.1:CDS
AGGCATGAAGTTTGCTGCTT+CGG 0.349397 5:+62565180 MsaT028440.1:CDS
GTTTCTGGACTACCATCATT+AGG 0.349414 5:+62566429 MsaT028440.1:CDS
GAGGAGTTGGCTCAGATGTT+TGG 0.356281 5:+62565814 MsaT028440.1:CDS
AGCAACTAATAGCTGCTTTA+CGG 0.356761 5:+62561922 MsaT028440.1:CDS
GAAAGATACGTTTCTTCCTA+TGG 0.361096 5:+62558655 MsaT028440.1:CDS
TCCAGCACCTTGAAAATTCA+TGG 0.362428 5:-62564726 None:intergenic
GACAGCCACGGGTATCGTTA+TGG 0.368607 5:+62564268 MsaT028440.1:CDS
ATGCCTGAATCTATGAAATC+TGG 0.370393 5:-62565163 None:intergenic
AATAAGACCTTCACAAATAT+CGG 0.370930 5:-62565640 None:intergenic
ACTTGGACCAAGGGATTCTA+TGG 0.377464 5:-62566361 None:intergenic
TTCATCCTTTGTCCAGAACT+TGG 0.383578 5:-62566378 None:intergenic
TAATTTGTAGGCTGCTTACT+TGG 0.387254 5:-62558689 None:intergenic
TCCATTGTGCATAGGTTGGT+TGG 0.395710 5:+62564223 MsaT028440.1:intron
GATCATTTGTCAATAATGTT+TGG 0.398477 5:+62566289 MsaT028440.1:intron
GTTTGCTGCTTCGGTTTCAC+CGG 0.398947 5:+62565189 MsaT028440.1:CDS
GGCTCAGATGTTTGGAATTG+AGG 0.399052 5:+62565822 MsaT028440.1:CDS
AGCTGATGCAGTAGTATAAC+GGG 0.401952 5:-62565494 None:intergenic
ATCAATTTCTCTGTTGGTTG+TGG 0.402028 5:-62558302 None:intergenic
TTCTCATTGGAGGTCTGTTA+AGG 0.408471 5:+62563694 MsaT028440.1:CDS
CTTGGTTCACTTTCTTCTGA+AGG 0.415434 5:+62565223 MsaT028440.1:CDS
GGCAGCTTGTATTTGTCGAC+AGG 0.419769 5:+62565875 MsaT028440.1:CDS
TGAGAATTTGGCCACCGAAC+AGG 0.420532 5:-62563677 None:intergenic
TCGGAGTTGTTGCAAAGTGC+AGG 0.421931 5:+62565592 MsaT028440.1:CDS
AACAGTCACCTCAACAATCA+TGG 0.424537 5:+62565296 MsaT028440.1:CDS
CAACTCAGATGCCCAAAATT+CGG 0.426436 5:+62565417 MsaT028440.1:CDS
GTTATGAAGCTTTCAACATC+AGG 0.426677 5:+62557599 None:intergenic
AAGGTGCTGGATTGTTGCCC+TGG 0.429616 5:+62564738 MsaT028440.1:CDS
ACCTTGTTTGTGCAGGTACA+TGG 0.430262 5:+62563625 MsaT028440.1:CDS
CCTGAAGATATTCAGAAAAT+GGG 0.436474 5:+62566330 MsaT028440.1:CDS
CCTTTCAATTATCAACAATC+AGG 0.439845 5:+62564896 MsaT028440.1:CDS
CAAGCCATGTTGGCTGCTGC+TGG 0.444005 5:+62564815 MsaT028440.1:CDS
TCACGAGCTGCGGGAGGAGT+TGG 0.446108 5:+62565801 MsaT028440.1:CDS
TTGTCCATCAATTTCTCTGT+TGG 0.448610 5:-62558308 None:intergenic
TTCGGTGGCCAAATTCTCAT+TGG 0.448662 5:+62563681 MsaT028440.1:CDS
CCATTGTGCATAGGTTGGTT+GGG 0.449329 5:+62564224 MsaT028440.1:intron
ACAGCCACGGGTATCGTTAT+GGG 0.450191 5:+62564269 MsaT028440.1:CDS
TTTGAAGATCCTCTTAGATC+AGG 0.451717 5:+62565850 MsaT028440.1:CDS
ATCGAGTCTTGGCTGCATCC+AGG 0.452925 5:-62564756 None:intergenic
CCTTCGCAGGTCGATGCCAT+TGG 0.456453 5:+62565334 MsaT028440.1:CDS
GCTCAGATGTTTGGAATTGA+GGG 0.458722 5:+62565823 MsaT028440.1:CDS
TAGTTTCTCTACCAACTTCA+GGG 0.464443 5:+62558039 MsaT028440.1:CDS
AACTAGAGTGTTGCTTCTGA+TGG 0.464826 5:-62565117 None:intergenic
TTAATAGATCTACATTCCCT+TGG 0.465558 5:-62564847 None:intergenic
GGCGGCAAGCTAGGATAATT+CGG 0.465974 5:-62558334 None:intergenic
TGAAGTTGGTAGAGAAACTA+AGG 0.467728 5:-62558036 None:intergenic
GGTTGGGATGAATCGACAGC+TGG 0.467846 5:+62564240 MsaT028440.1:CDS
GGAAATAGTGATGGATACAT+TGG 0.468477 5:-62564315 None:intergenic
GCATTGTAACATTATGAAGT+TGG 0.469818 5:-62558369 None:intergenic
TACCGACAGAAACGCGTGTA+TGG 0.471442 5:-62562100 None:intergenic
CATAACAGTTTGTGGCCTAC+TGG 0.472353 5:-62561834 None:intergenic
CCTTCACAAATATCGGTGTC+TGG 0.475371 5:-62565633 None:intergenic
GGGGTCAATATCGATTCGTC+TGG 0.476741 5:+62565448 MsaT028440.1:CDS
GAGAACGATGTTCTTCTCCT+TGG 0.480918 5:+62565898 MsaT028440.1:CDS
CCAAAATTCGGTTCTGTTTG+GGG 0.481359 5:+62565429 MsaT028440.1:CDS
AGCTGCCAGCCTGATCTAAG+AGG 0.481740 5:-62565859 None:intergenic
AAAGATTCTCCGCCAAGCCT+TGG 0.484860 5:-62565000 None:intergenic
TTGGTTCACTTTCTTCTGAA+GGG 0.486436 5:+62565224 MsaT028440.1:CDS
GAGCTGATGCAGTAGTATAA+CGG 0.489369 5:-62565495 None:intergenic
TTCTCCTTGGAGACGATCCG+TGG 0.491849 5:+62565911 MsaT028440.1:CDS
CACTCCAGCCTGTGGTAAGA+AGG 0.492721 5:-62561626 None:intergenic
TTACGGTGTTCTTTAATCCA+AGG 0.496586 5:+62561939 MsaT028440.1:CDS
ACAACCAACAGAGAAATTGA+TGG 0.500348 5:+62558304 MsaT028440.1:CDS
TGATCATTTCCGAGCAAAGT+TGG 0.500635 5:-62564779 None:intergenic
CTGCGAAGGTGAATACTTTG+AGG 0.500931 5:-62565320 None:intergenic
ATCAACTGAGGCGGCAAGCT+AGG 0.503838 5:-62558343 None:intergenic
AGCAAAGTTGGATCGAGTCT+TGG 0.506520 5:-62564767 None:intergenic
CCATGGTCGTTTCAATCTAA+GGG 0.508697 5:-62564337 None:intergenic
GGTGGCCAAATTCTCATTGG+AGG 0.509028 5:+62563684 MsaT028440.1:CDS
ACCACAAGGCCAAGGCTTGG+CGG 0.510135 5:+62564991 MsaT028440.1:CDS
TCCGATGAATCTTGCATGCA+AGG 0.510858 5:-62565574 None:intergenic
TCACTTTCTTCTGAAGGGAG+TGG 0.511627 5:+62565229 MsaT028440.1:CDS
CAGCAGCAGCCAACATGGCT+TGG 0.511774 5:-62564814 None:intergenic
AACATCAGGAATGAGTCAGC+AGG 0.513653 5:+62557613 MsaT028440.1:CDS
TCGAGTCTTGGCTGCATCCA+GGG 0.514219 5:-62564755 None:intergenic
TCCGCCAAGCCTTGGCCTTG+TGG 0.516994 5:-62564992 None:intergenic
CTGCTCAAGAACTAATTGCT+AGG 0.517720 5:+62558904 MsaT028440.1:CDS
CTAGCAATTAGTTCTTGAGC+AGG 0.518496 5:-62558903 None:intergenic
TGCTGTTGCTGTAGCTGCAT+AGG 0.518673 5:-62564929 None:intergenic
CCCTCAAGGTCATAGTGAGC+AGG 0.518733 5:+62558079 MsaT028440.1:CDS
CTTGGAATCCCTAATTCCAT+AGG 0.521068 5:-62558671 None:intergenic
GTATACAAATCAGGTTCAGT+AGG 0.522013 5:+62565745 MsaT028440.1:CDS
AGTGTTTGAATTCTGAGCTA+TGG 0.523414 5:+62557997 MsaT028440.1:CDS
ATGCATCGACAATGCCGCTA+GGG 0.524756 5:+62565524 MsaT028440.1:CDS
TCACCGGGTCAAAACATGCT+TGG 0.525405 5:+62565205 MsaT028440.1:CDS
TTGAAACGACCATGGCATCC+TGG 0.526294 5:+62564345 MsaT028440.1:CDS
CTCAAAGTATTCACCTTCGC+AGG 0.527782 5:+62565321 MsaT028440.1:CDS
GTGGTAAGAAGGTGTCGTTT+TGG 0.529135 5:-62561615 None:intergenic
GGACAGTGGTAGGGAGCAGA+AGG 0.530895 5:-62565471 None:intergenic
CCAAGAAAAGAAGAAGTGCC+AGG 0.532299 5:-62564363 None:intergenic
TCACTTGAAAGAACTGATGA+TGG 0.534608 5:-62561857 None:intergenic
CCTTGTTTGTGCAGGTACAT+GGG 0.538001 5:+62563626 MsaT028440.1:CDS
GGATAACGTACCGGAGTCAA+CGG 0.538035 5:-62558547 None:intergenic
GACACCTTCTTACCACAGGC+TGG 0.540257 5:+62561622 MsaT028440.1:CDS
TTGTCCAGAACTTGGACCAA+GGG 0.541296 5:-62566370 None:intergenic
GACTGAAGAATCAAGTGTCC+AGG 0.542124 5:+62562145 MsaT028440.1:CDS
CCTGCTCACTATGACCTTGA+GGG 0.546063 5:-62558079 None:intergenic
GATGATGGCATAACAGTTTG+TGG 0.546352 5:-62561842 None:intergenic
AGACTCGATCCAACTTTGCT+CGG 0.547153 5:+62564770 MsaT028440.1:CDS
CATAATATTATTAGTCGACA+CGG 0.547520 5:-62564966 None:intergenic
TGCTCAAGAACTAATTGCTA+GGG 0.548822 5:+62558905 MsaT028440.1:CDS
CCTGATTGTTGATAATTGAA+AGG 0.550470 5:-62564896 None:intergenic
ATGTGCCACCTTGTTTGTGC+AGG 0.550647 5:+62563618 MsaT028440.1:CDS
CAAACCAGCAGCAGCCAACA+TGG 0.552204 5:-62564819 None:intergenic
CAACAGCTATCACGAGCTGC+GGG 0.552575 5:+62565792 MsaT028440.1:CDS
TAAGTGACATGGATCCTGTT+CGG 0.554501 5:+62563663 MsaT028440.1:CDS
GAAACTTCCACTCAACATCA+TGG 0.555525 5:-62558932 None:intergenic
AAGATCCTCTTAGATCAGGC+TGG 0.555768 5:+62565854 MsaT028440.1:CDS
TACCATACACGCGTTTCTGT+CGG 0.559073 5:+62562098 MsaT028440.1:CDS
GAGCTATGGCATGCATGTGC+GGG 0.561055 5:+62558011 MsaT028440.1:CDS
GCAACCACAAGGCCAAGGCT+TGG 0.561940 5:+62564988 MsaT028440.1:CDS
TGAGCTATGGCATGCATGTG+CGG 0.562220 5:+62558010 MsaT028440.1:CDS
AATCTAAGGGGAAATAGTGA+TGG 0.562581 5:-62564324 None:intergenic
CCCATGTACCTGCACAAACA+AGG 0.564028 5:-62563626 None:intergenic
TATTCAAGTGAGCCTAATGA+TGG 0.565204 5:-62566441 None:intergenic
GATGCATCGACAATGCCGCT+AGG 0.565320 5:+62565523 MsaT028440.1:CDS
GTTGGGATGAATCGACAGCT+GGG 0.567928 5:+62564241 MsaT028440.1:CDS
CTGTTGAATTTATCCAGAAG+TGG 0.568337 5:+62565256 MsaT028440.1:CDS
TCCTTGCATGCAAGATTCAT+CGG 0.569439 5:+62565573 MsaT028440.1:CDS
TTTGTCCAGAACTTGGACCA+AGG 0.569650 5:-62566371 None:intergenic
GAAGAAGTGCCAGGATGCCA+TGG 0.571373 5:-62564354 None:intergenic
GCAATTAGTTCTTGAGCAGG+AGG 0.571462 5:-62558900 None:intergenic
ACAGTCACCTCAACAATCAT+GGG 0.573472 5:+62565297 MsaT028440.1:CDS
CTGCTGGTTTGCAGAACCAA+GGG 0.574081 5:+62564831 MsaT028440.1:CDS
GATTGTTGTGCGATTTCTGA+AGG 0.575710 5:-62565033 None:intergenic
GACGCTACAGCCGTTGACTC+CGG 0.576927 5:+62558537 MsaT028440.1:CDS
ATGAGTCAGCAGGGTCATGA+AGG 0.577400 5:+62557623 MsaT028440.1:CDS
CCCTTAGATTGAAACGACCA+TGG 0.577662 5:+62564337 MsaT028440.1:CDS
TTTGCTGCTTCGGTTTCACC+GGG 0.578250 5:+62565190 MsaT028440.1:CDS
AGCTGGGGAGAGACAGCCAC+GGG 0.580172 5:+62564257 MsaT028440.1:CDS
CTCAGATGTTTGGAATTGAG+GGG 0.583967 5:+62565824 MsaT028440.1:CDS
TCTCCTTGGAGACGATCCGT+GGG 0.584101 5:+62565912 MsaT028440.1:CDS
ACCACACGAGTCCCTGAAGT+TGG 0.588097 5:-62558050 None:intergenic
CGTGTGGTTTACTTCCCTCA+AGG 0.589746 5:+62558065 MsaT028440.1:CDS
TGCATCGACAATGCCGCTAG+GGG 0.593054 5:+62565525 MsaT028440.1:CDS
TAGCGGCATTGTCGATGCAT+CGG 0.593112 5:-62565521 None:intergenic
GAAGAAGCCATAGAATCCCT+TGG 0.594811 5:+62566354 MsaT028440.1:CDS
CCAATGGCATCGACCTGCGA+AGG 0.595739 5:-62565334 None:intergenic
CTAGGGGAATCTAGTTTCCA+GGG 0.599563 5:+62565541 MsaT028440.1:CDS
CGGAGTTGTTGCAAAGTGCA+GGG 0.599731 5:+62565593 MsaT028440.1:CDS
ACCTGCTCACTATGACCTTG+AGG 0.599895 5:-62558080 None:intergenic
GAAATCTATACTTACTCCCA+CGG 0.599944 5:-62565928 None:intergenic
TCAGCAATACCAAGCCATGT+TGG 0.601794 5:+62564805 MsaT028440.1:CDS
TGGGAATACGTCGTGCCAGT+AGG 0.602014 5:+62561819 MsaT028440.1:CDS
ATTATGCAACCACAAGGCCA+AGG 0.604527 5:+62564983 MsaT028440.1:CDS
GCTGTAGCTGCATAGGACTG+AGG 0.610355 5:-62564922 None:intergenic
ACTCCCACGGATCGTCTCCA+AGG 0.611476 5:-62565915 None:intergenic
TGCAAGGATATGGAGAACCC+TGG 0.612109 5:-62565558 None:intergenic
AAACGACACCTTCTTACCAC+AGG 0.613976 5:+62561618 MsaT028440.1:CDS
GGGATCTCCATGATGTTGAG+TGG 0.619633 5:+62558925 MsaT028440.1:CDS
GCTGCTGGTTTGCAGAACCA+AGG 0.621321 5:+62564830 MsaT028440.1:CDS
TATACAAATCAGGTTCAGTA+GGG 0.621544 5:+62565746 MsaT028440.1:CDS
AACAAATACACTCCAGCCTG+TGG 0.623923 5:-62561634 None:intergenic
GAGTGTTGCTTCTGATGGAG+CGG 0.624303 5:-62565112 None:intergenic
GGTGGCACATGCATAAGTAG+AGG 0.625982 5:-62563605 None:intergenic
TCAAGTGATAGCATGCACAT+TGG 0.626620 5:+62561872 MsaT028440.1:CDS
TGAGAGTGGTATGACAAACT+CGG 0.627664 5:-62562057 None:intergenic
GCGAGTGATACAAGCACACA+TGG 0.628539 5:+62558731 MsaT028440.1:CDS
ATCACGGACACTACCAATGG+AGG 0.629829 5:-62558794 None:intergenic
ACCAACTTCAGGGACTCGTG+TGG 0.631510 5:+62558049 MsaT028440.1:CDS
GTGATACAAGCACACATGGA+GGG 0.632714 5:+62558735 MsaT028440.1:CDS
GGCGCTCACTTGACATCTCG+CGG 0.633721 5:+62565767 MsaT028440.1:CDS
TTGGTCCAAGTTCTGGACAA+AGG 0.633729 5:+62566373 MsaT028440.1:CDS
TCAACAGCTATCACGAGCTG+CGG 0.635957 5:+62565791 MsaT028440.1:CDS
GTGGCACATGCATAAGTAGA+GGG 0.636679 5:-62563604 None:intergenic
ATGCGACATCGAATTTCCAA+TGG 0.640228 5:-62565350 None:intergenic
CAGCTATCACGAGCTGCGGG+AGG 0.641910 5:+62565795 MsaT028440.1:CDS
AGTGGTATGACAAACTCGGA+TGG 0.643986 5:-62562053 None:intergenic
TTTGAGGCCCATGATTGTTG+AGG 0.647475 5:-62565304 None:intergenic
AATTCATGGAATTAAGACCA+TGG 0.648676 5:-62564712 None:intergenic
ACATCAGGAATGAGTCAGCA+GGG 0.651756 5:+62557614 MsaT028440.1:CDS
CATGGTCGTTTCAATCTAAG+GGG 0.661723 5:-62564336 None:intergenic
GCAGCTTGTATTTGTCGACA+GGG 0.662044 5:+62565876 MsaT028440.1:CDS
TATAACTAGCATAAGTGACA+TGG 0.663626 5:+62563652 MsaT028440.1:CDS
CCAGACACCGATATTTGTGA+AGG 0.664833 5:+62565633 MsaT028440.1:CDS
ACTTTCTCAGCTGCACGACG+AGG 0.665589 5:-62558767 None:intergenic
ACATCAATCGTACAACCACA+TGG 0.667659 5:+62565394 MsaT028440.1:CDS
ATTTCCCATAACGATACCCG+TGG 0.672203 5:-62564273 None:intergenic
AGTTGGCATATCAACTGAGG+CGG 0.676478 5:-62558352 None:intergenic
GGACAAAGGATGAACAACGC+TGG 0.681712 5:+62566387 MsaT028440.1:CDS
CAGCTGGGGAGAGACAGCCA+CGG 0.687247 5:+62564256 MsaT028440.1:CDS
TGGGCATCTGAGTTGCCATG+TGG 0.688526 5:-62565409 None:intergenic
TGAAGTTGGCATATCAACTG+AGG 0.692734 5:-62558355 None:intergenic
GTGACATGGATCCTGTTCGG+TGG 0.692792 5:+62563666 MsaT028440.1:CDS
AATAATATTATGCAACCACA+AGG 0.697009 5:+62564977 MsaT028440.1:CDS
TTGGGATGAATCGACAGCTG+GGG 0.697786 5:+62564242 MsaT028440.1:CDS
GAAGTTGGTAGAGAAACTAA+GGG 0.700437 5:-62558035 None:intergenic
AGTGATACAAGCACACATGG+AGG 0.710783 5:+62558734 MsaT028440.1:CDS
TGGAAACTAGATTCCCCTAG+CGG 0.730070 5:-62565538 None:intergenic
GCTGATGCAGTAGTATAACG+GGG 0.736278 5:-62565493 None:intergenic
ATGTACCTGCACAAACAAGG+TGG 0.738221 5:-62563623 None:intergenic
CTGATGCAGTAGTATAACGG+GGG 0.742279 5:-62565492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 62557602 62566467 62557602 ID=MsaG028440
Chr5 mRNA 62557602 62566467 62557602 ID=MsaT028440.1;Parent=MsaG028440
Chr5 exon 62557602 62557644 62557602 ID=MsaT028440.1.exon1;Parent=MsaT028440.1
Chr5 CDS 62557602 62557644 62557602 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62557985 62558100 62557985 ID=MsaT028440.1.exon2;Parent=MsaT028440.1
Chr5 CDS 62557985 62558100 62557985 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62558295 62558393 62558295 ID=MsaT028440.1.exon3;Parent=MsaT028440.1
Chr5 CDS 62558295 62558393 62558295 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62558502 62558558 62558502 ID=MsaT028440.1.exon4;Parent=MsaT028440.1
Chr5 CDS 62558502 62558558 62558502 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62558647 62558802 62558647 ID=MsaT028440.1.exon5;Parent=MsaT028440.1
Chr5 CDS 62558647 62558802 62558647 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62558885 62558969 62558885 ID=MsaT028440.1.exon6;Parent=MsaT028440.1
Chr5 CDS 62558885 62558969 62558885 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62561610 62561700 62561610 ID=MsaT028440.1.exon7;Parent=MsaT028440.1
Chr5 CDS 62561610 62561700 62561610 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62561796 62561960 62561796 ID=MsaT028440.1.exon8;Parent=MsaT028440.1
Chr5 CDS 62561796 62561960 62561796 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62562046 62562166 62562046 ID=MsaT028440.1.exon9;Parent=MsaT028440.1
Chr5 CDS 62562046 62562166 62562046 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62563590 62563715 62563590 ID=MsaT028440.1.exon10;Parent=MsaT028440.1
Chr5 CDS 62563590 62563715 62563590 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62564237 62564384 62564237 ID=MsaT028440.1.exon11;Parent=MsaT028440.1
Chr5 CDS 62564237 62564384 62564237 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62564711 62565654 62564711 ID=MsaT028440.1.exon12;Parent=MsaT028440.1
Chr5 CDS 62564711 62565654 62564711 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62565745 62565935 62565745 ID=MsaT028440.1.exon13;Parent=MsaT028440.1
Chr5 CDS 62565745 62565935 62565745 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Chr5 exon 62566290 62566467 62566290 ID=MsaT028440.1.exon14;Parent=MsaT028440.1
Chr5 CDS 62566290 62566467 62566290 ID=cds.MsaT028440.1;Parent=MsaT028440.1
Gene Sequence

>MsaT028440.1

ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGTCATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCTCTACCAACTTCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACCAACAGAGAAATTGATGGACAAATACCGAATTATCCTAGCTTGCCGCCTCAGTTGATATGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAGATGACGCTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTAGGGATTCCAAGTAAGCAGCCTACAAATTATTTTTGCAAGACATTGACGGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTCCGAGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCAAAAAGACTAGTAGCTGGTGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAGTAGGCCACAAACTGTTATGCCATCATCAGTTCTTTCAAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCAGCACATGCTGCAGCAACTAATAGCTGCTTTACGGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTCTCAAAATATATCAAAGCTGTGTACCATACACGCGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCAGCACTATACTATATTCCCTCTACTTATGCATGTGCCACCTTGTTTGTGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCAAATTCTCATTGGAGGTCTGTTAAGGTTGGTTGGGATGAATCGACAGCTGGGGAGAGACAGCCACGGGTATCGTTATGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTAGATTGAAACGACCATGGCATCCTGGCACTTCTTCTTTTCTTGACCATGGTCTTAATTCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCCAAGACTCGATCCAACTTTGCTCGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCTGCTGCTGGTTTGCAGAACCAAGGGAATGTAGATCTATTAAGGCAACAGATGATGAATTTTCAACAGCCTTTCAATTATCAACAATCAGGAAACCTCAGTCCTATGCAGCTACAGCAACAGCAAGCAATTCAACAATCCGTGTCGACTAATAATATTATGCAACCACAAGGCCAAGGCTTGGCGGAGAATCTTTCTCAGCACATCCTTCAGAAATCGCACAACAATCGTGAAAACCAAACACAGCAACAAAGTTATCAAGATTCAGTTTTAATTCAAGGTGATCCGCTCCATCAGAAGCAACACTCTAGTTTGCCTTCACCGTCATACTCAAAACCAGATTTCATAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCACCGGGTCAAAACATGCTTGGTTCACTTTCTTCTGAAGGGAGTGGCAATCTGTTGAATTTATCCAGAAGTGGTCATTCTATGCTGACTGAACAGTCACCTCAACAATCATGGGCCTCAAAGTATTCACCTTCGCAGGTCGATGCCATTGGAAATTCGATGTCGCATGTGCAGTATTCCGGAAGAGATACATCAATCGTACAACCACATGGCAACTCAGATGCCCAAAATTCGGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCCCGTTATACTACTGCATCAGCTCATGCCGATGCATCGACAATGCCGCTAGGGGAATCTAGTTTCCAGGGTTCTCCATATCCTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAAGTTGATGCGCAAAACCAGACACCGATATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCACTTGACATCTCGCGGTTCAACAGCTATCACGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCTCCTGAAGATATTCAGAAAATGGGAGAAGAAGCCATAGAATCCCTTGGTCCAAGTTCTGGACAAAGGATGAACAACGCTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTTGAATACTGA

Protein sequence

>MsaT028440.1

MKLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVQHYTIFPLLMHVPPCLCRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDHGLNSMNFQGAGLLPWMQPRLDPTLLGNDHNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYQQSGNLSPMQLQQQQAIQQSVSTNNIMQPQGQGLAENLSQHILQKSHNNRENQTQQQSYQDSVLIQGDPLHQKQHSSLPSPSYSKPDFIDSGMKFAASVSPGQNMLGSLSSEGSGNLLNLSRSGHSMLTEQSPQQSWASKYSPSQVDAIGNSMSHVQYSGRDTSIVQPHGNSDAQNSVLFGVNIDSSGLLLPTTVPRYTTASAHADASTMPLGESSFQGSPYPCMQDSSELLQSAGQVDAQNQTPIFVKVYKSGSVGRSLDISRFNSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAIESLGPSSGQRMNNAGAESHDIVSGLPSLGSLEY*