AlfalfaGEDB | MsaG028481

M. sativa ssp. caerulea / MsaG028481

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028481	XP_003616055.1	97.143	630	18	0	1	630	22	651	0.0	1261

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028481	sp\|Q9LVM0\|Y5830_ARATH	67.610	636	183	6	7	628	27	653	0.0	860

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028481	tr\|G7K0V8\|G7K0V8_MEDTR	97.143	630	18	0	1	630	22	651	0.0	1261

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000015	MsaG028481	0.819313	2.168431e-52	4.683588e-50
MsaG000030	MsaG028481	0.823497	2.370240e-53	5.723327e-51
MsaG000045	MsaG028481	0.864670	2.052414e-64	1.913698e-61
MsaG000070	MsaG028481	0.802150	1.079529e-48	1.532357e-46
MsaG000083	MsaG028481	0.885090	2.361645e-71	5.433240e-68
MsaG000113	MsaG028481	0.847999	1.532548e-59	7.761253e-57
MsaG000127	MsaG028481	0.811262	1.310508e-50	2.308054e-48
MsaG000128	MsaG028481	0.814515	2.560085e-51	4.888582e-49
MsaG000140	MsaG028481	0.819782	1.697008e-52	3.710626e-50
MsaG000151	MsaG028481	0.846797	3.266000e-59	1.588480e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG028481	MtrunA17_Chr5g0432851	97.143	630	18	0	1	630	22	651	1261
MsaG028481	MtrunA17_Chr3g0108301	77.586	638	135	4	1	630	13	650	956
MsaG028481	MtrunA17_Chr3g0128551	61.726	614	224	6	23	630	27	635	759
MsaG028481	MtrunA17_Chr7g0245171	61.102	617	217	6	3	609	6	609	726
MsaG028481	MtrunA17_Chr5g0428541	58.643	619	215	10	1	608	1	589	675
MsaG028481	MtrunA17_Chr8g0387791	51.592	628	285	9	10	629	3	619	616
MsaG028481	MtrunA17_Chr4g0062911	54.235	614	248	10	28	619	30	632	608
MsaG028481	MtrunA17_Chr3g0126271	51.033	629	277	12	11	630	5	611	597
MsaG028481	MtrunA17_Chr5g0396941	49.515	618	263	10	10	619	9	585	566
MsaG028481	MtrunA17_Chr1g0159161	48.618	615	259	10	9	618	6	568	546

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028481	AT5G58300.3	67.610	636	183	6	7	628	27	653	0.0	860
MsaG028481	AT5G58300.1	67.610	636	183	6	7	628	27	653	0.0	860
MsaG028481	AT5G58300.2	67.610	636	183	6	7	628	27	653	0.0	860
MsaG028481	AT3G08680.1	62.025	632	216	8	7	619	5	631	0.0	755
MsaG028481	AT3G08680.2	62.025	632	216	8	7	619	5	631	0.0	755
MsaG028481	AT5G05160.1	56.289	636	247	13	4	618	8	633	0.0	675
MsaG028481	AT2G26730.1	55.226	641	260	12	11	630	11	645	0.0	640
MsaG028481	AT4G23740.1	49.495	594	271	9	28	606	29	608	0.0	559
MsaG028481	AT4G23740.2	49.495	594	271	9	28	606	29	608	0.0	559
MsaG028481	AT1G48480.1	48.025	633	282	18	24	618	32	655	4.77e-180	525

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Find 172 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACGGTTGTAGTCAAA+AGG	0.516466	5:+63060646	MsaT028481.1:CDS
AAAGCCAAAGGTCCTAGTGG+TGG	0.668375	5:+63060438	MsaT028481.1:CDS
AAAGGTCCTAGTGGTGGTGG+AGG	0.572909	5:+63060444	MsaT028481.1:CDS
AAATCAGATGTTTACAGTTT+TGG	0.267711	5:+63061446	MsaT028481.1:CDS
AAATGCAGCCATCGTTATCT+TGG	0.382030	5:-63061322	None:intergenic
AAGAAGTTGTGGTTGGCAAG+AGG	0.487187	5:+63060673	MsaT028481.1:CDS
AAGGGATAGATCCATTCAAA+TGG	0.539472	5:-63060155	None:intergenic
AAGGTTGCGACGATGAGGGA+CGG	0.661762	5:-63059689	None:intergenic
AATCTATCCATACTCTTGCA+TGG	0.568937	5:+63060819	MsaT028481.1:CDS
AATGTAGGAGGAGGCGATGG+AGG	0.568140	5:-63060264	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	63059577	63061802	63059577	ID=MsaG028481
Chr5	mRNA	63059577	63061802	63059577	ID=MsaT028481.1;Parent=MsaG028481
Chr5	exon	63059577	63060840	63059577	ID=MsaT028481.1.exon1;Parent=MsaT028481.1
Chr5	CDS	63059577	63060840	63059577	ID=cds.MsaT028481.1;Parent=MsaT028481.1
Chr5	exon	63061174	63061802	63061174	ID=MsaT028481.1.exon2;Parent=MsaT028481.1
Chr5	CDS	63061174	63061802	63061174	ID=cds.MsaT028481.1;Parent=MsaT028481.1

Gene Sequence

>MsaT028481.1

ATGAAATTCTTCTCACCATTGCAAGCTTTTCTTTTTATCATTGTTATTCTTTCTCCTCTTGTTATGGCTGACCTGAATTCCGATAAACAAGCCCTTCTTGATTTTGCTTCTGCCGTCCCTCATCGTCGCAACCTTAAGTGGGACAATGCTACCTCAATATGTACATCTTGGATAGGCATCACTTGCAATCCAAACAGTACTCGTGTAGTTTCTGTCCGGCTCCCTGGAGTCGGACTAGTAGGCACCATTCCATCCAATACACTCGGCAAACTTGACTCACTTAAAACTATTAGCCTTCGCTCAAACCTACTAAGTGGAAGTATACCTCATGATATTGCTTCTCTTCCGTCTCTACAATATCTCTACCTTCAACATAATAACCTTTCTGGTGAATTACCAACATCATTGCCGTCACAACTCAGTGCACTTATTTTGTCTTACAATTCTTTCACAGGTACCATTCCGAAGACATTGCAAAACTTAACACAACTAACTCGATTGAGCCTCGAGAATAACTCCTTATCTGGACCGATACCTGATCTCCATGTAAACCTCAAACAATTGAATTTGAGCTACAACCATTTGAATGGATCTATCCCTTCATCTCTTCAGAGTTTTTCAAATTCTTCCTTTGAAGGGAACTCTCTCTTATGTGGATTGCCTCTAAAGCCGTGCTCCACAGTCCCTCCTCCATCGCCTCCTCCTACATTGGCTCCTGTAATACACGACTCGAAAAATAAACTGAGTAAAGGAGCTATCATTGCAATTGCTGTTGGTGGAGCTGTTCTGTTATTTTTCGTAGCTCTTGTCATTGTTCTTTGTTGTTTAAAGAAAAAAGATAACAGTACCTCAAGAGTAGTTAAAGCCAAAGGTCCTAGTGGTGGTGGAGGAAGGACTGAAAAGCCGAAAGAAGAGTTTGGAAGTGGAGTGCAGGAATCCGAGAGAAACAAATTGGTTTTCTTTGAGGGATGCTCTTACAATTTCGATCTCGAGGATTTGTTGAGAGCTTCAGCTGAGGTCCTTGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTGGAGGAGCAAACGACGGTTGTAGTCAAAAGGTTGAAAGAAGTTGTGGTTGGCAAGAGGGAATTTGAACAGCAGATGGAGATTGTTGGAAGCATTGGAAATCACCCGAATGTCGTTCCGCTTCGCGCTTATTATTATTCAAAGGATGAGAAGCTTTTAGTTTGCGACTATTTCCCAAATGGCAATCTATCCATACTCTTGCATGGTACTAGGACAGGCGGAAGAACTACTTTAGATTGGAACACACGAGTAAAAATCTCTCTCGGAATTGCCAGAGGAATTGCTCATTTACATTCAGTTGGTGGTCCAAGATTCACACATGGAAATGTGAAATCCTCCAATGTCCTCCTAAACCAAGATAACGATGGCTGCATTTCCGATTTCGGCCTGACACCACTCATGAACATTCCTGCAACCCCTTCTAGAACCATGGGCTACCGTGCTCCTGAGGTAATTGAGACTCGGAAGCACACTCATAAATCAGATGTTTACAGTTTTGGTGTCCTTCTTTTGGAAATGCTTACAGGTAAAGCGCCACAACAGTCTCCCGTACGCGATGACATGGTTGATCTCCCTAGATGGGTTCAGTCCGTTGTTAGGGAGGAGTGGACCGCCGAGGTTTTTGATGTGGAGTTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGGCATGGCGTGTGTTGCGAAGGTTCCGGATATGAGGCCTAACATGGAGGAAGTAGTGAGAATGATTGAAGAAATTCGGCAATCTGACTCGGATAACCGGCCGTCTTCTGATGATAATAAATCCAAGGATTTAAATGTTCAAACTCCATGA

Protein sequence

>MsaT028481.1

MKFFSPLQAFLFIIVILSPLVMADLNSDKQALLDFASAVPHRRNLKWDNATSICTSWIGITCNPNSTRVVSVRLPGVGLVGTIPSNTLGKLDSLKTISLRSNLLSGSIPHDIASLPSLQYLYLQHNNLSGELPTSLPSQLSALILSYNSFTGTIPKTLQNLTQLTRLSLENNSLSGPIPDLHVNLKQLNLSYNHLNGSIPSSLQSFSNSSFEGNSLLCGLPLKPCSTVPPPSPPPTLAPVIHDSKNKLSKGAIIAIAVGGAVLLFFVALVIVLCCLKKKDNSTSRVVKAKGPSGGGGRTEKPKEEFGSGVQESERNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEEQTTVVVKRLKEVVVGKREFEQQMEIVGSIGNHPNVVPLRAYYYSKDEKLLVCDYFPNGNLSILLHGTRTGGRTTLDWNTRVKISLGIARGIAHLHSVGGPRFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNIPATPSRTMGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMACVAKVPDMRPNMEEVVRMIEEIRQSDSDNRPSSDDNKSKDLNVQTP*