AlfalfaGEDB | MsaG028490

M. sativa ssp. caerulea / MsaG028490

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028490	KEH26852.1	51.765	85	40	1	69	153	61	144	6.73e-18	89.7

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028490	tr\|A0A072UB72\|A0A072UB72_MEDTR	51.765	85	40	1	69	153	61	144	3.21e-18	89.7

TFs/TRs:

Gene ID	Type	Classification
MsaG028490	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000791	MsaG028490	0.806108	1.635003e-49	2.543834e-47
MsaG001030	MsaG028490	0.800383	2.472367e-48	3.371888e-46
MsaG001192	MsaG028490	0.809235	3.568457e-50	5.982196e-48
MsaG001827	MsaG028490	0.805809	1.888846e-49	2.918060e-47
MsaG001861	MsaG028490	0.808911	4.185028e-50	6.961567e-48
MsaG001910	MsaG028490	0.822554	3.923594e-53	9.235643e-51
MsaG002024	MsaG028490	0.805799	1.897617e-49	2.930936e-47
MsaG002093	MsaG028490	0.803004	7.209908e-49	1.043691e-46
MsaG002121	MsaG028490	0.824665	1.264504e-53	3.151910e-51
MsaG002359	MsaG028490	0.807338	9.016090e-50	1.444141e-47
MsaG003332	MsaG028490	0.836462	1.687439e-56	5.905958e-54
MsaG003339	MsaG028490	0.800895	1.946226e-48	2.685074e-46
MsaG003915	MsaG028490	0.810629	1.794431e-50	3.111715e-48
MsaG004308	MsaG028490	0.810074	2.360530e-50	4.038433e-48
MsaG005035	MsaG028490	0.800607	2.227152e-48	3.052881e-46
MsaG005246	MsaG028490	0.802563	8.883864e-49	1.273083e-46
MsaG005626	MsaG028490	0.807169	9.788629e-50	1.561583e-47
MsaG005643	MsaG028490	0.803194	6.588324e-49	9.579261e-47
MsaG006254	MsaG028490	0.805760	1.933527e-49	2.983697e-47
MsaG006256	MsaG028490	0.801322	1.593515e-48	2.219823e-46
MsaG006679	MsaG028490	0.801898	1.215587e-48	1.715690e-46
MsaG006841	MsaG028490	0.801566	1.420911e-48	1.990327e-46
MsaG007399	MsaG028490	0.818713	2.963600e-52	6.300987e-50
MsaG007580	MsaG028490	0.800884	1.956964e-48	2.699202e-46
MsaG007700	MsaG028490	0.800156	2.748669e-48	3.729439e-46
MsaG008033	MsaG028490	0.847040	2.804281e-59	1.375056e-56
MsaG008299	MsaG028490	0.800193	2.702079e-48	3.669211e-46
MsaG008815	MsaG028490	0.801225	1.667794e-48	2.318108e-46
MsaG008988	MsaG028490	0.827313	2.991033e-54	8.023154e-52
MsaG009156	MsaG028490	0.807541	8.167775e-50	1.314612e-47
MsaG009916	MsaG028490	0.812723	6.317382e-51	1.153418e-48
MsaG011240	MsaG028490	0.823026	3.049867e-53	7.271206e-51
MsaG011336	MsaG028490	0.809363	3.350760e-50	5.634680e-48
MsaG011341	MsaG028490	0.801333	1.585495e-48	2.209223e-46
MsaG011460	MsaG028490	0.808906	4.193496e-50	6.974936e-48
MsaG011996	MsaG028490	0.802604	8.714731e-49	1.250005e-46
MsaG012130	MsaG028490	0.802245	1.032151e-48	1.468298e-46
MsaG012302	MsaG028490	0.802849	7.759232e-49	1.119166e-46
MsaG013182	MsaG028490	0.833825	7.749883e-56	2.506409e-53
MsaG013327	MsaG028490	0.814478	2.607599e-51	4.974860e-49
MsaG013443	MsaG028490	0.808335	5.546391e-50	9.098847e-48
MsaG014649	MsaG028490	0.875018	8.878002e-68	1.277713e-64
MsaG016584	MsaG028490	0.822366	4.337265e-53	1.015802e-50
MsaG017682	MsaG028490	0.801156	1.722317e-48	2.390229e-46
MsaG018355	MsaG028490	0.819479	1.987997e-52	4.312640e-50
MsaG018502	MsaG028490	0.803088	6.929991e-49	1.005119e-46
MsaG018876	MsaG028490	0.805241	2.481760e-49	3.783623e-47
MsaG019225	MsaG028490	0.801291	1.616881e-48	2.250760e-46
MsaG019430	MsaG028490	0.824707	1.236242e-53	3.084939e-51
MsaG019533	MsaG028490	0.803884	4.747839e-49	7.013997e-47
MsaG020091	MsaG028490	0.812494	7.087620e-51	1.286729e-48
MsaG020126	MsaG028490	0.805386	2.315047e-49	3.541294e-47
MsaG020641	MsaG028490	0.805789	1.906512e-49	2.944010e-47
MsaG020775	MsaG028490	0.803957	4.585947e-49	6.786457e-47
MsaG020782	MsaG028490	0.802284	1.013596e-48	1.443211e-46
MsaG021085	MsaG028490	0.834889	4.204967e-56	1.403832e-53
MsaG021273	MsaG028490	0.821745	6.030505e-53	1.389048e-50
MsaG021781	MsaG028490	0.823416	2.475370e-53	5.964151e-51
MsaG021836	MsaG028490	0.834126	6.522005e-56	2.128186e-53
MsaG022454	MsaG028490	0.841465	8.672262e-58	3.545514e-55
MsaG022706	MsaG028490	0.802090	1.110713e-48	1.574476e-46
MsaG022954	MsaG028490	0.819927	1.572272e-52	3.451307e-50
MsaG023230	MsaG028490	0.805329	2.378450e-49	3.633526e-47
MsaG023664	MsaG028490	0.820419	1.214430e-52	2.700842e-50
MsaG023681	MsaG028490	0.809846	2.641725e-50	4.494683e-48
MsaG023849	MsaG028490	0.800602	2.232207e-48	3.059458e-46
MsaG024454	MsaG028490	0.807426	8.637197e-50	1.386372e-47
MsaG025276	MsaG028490	0.829038	1.153681e-54	3.248208e-52
MsaG025330	MsaG028490	0.821725	6.094885e-53	1.403155e-50
MsaG025615	MsaG028490	0.802861	7.715303e-49	1.113144e-46
MsaG026252	MsaG028490	0.839159	3.449137e-57	1.311415e-54
MsaG027172	MsaG028490	0.804981	2.811650e-49	4.260692e-47
MsaG027573	MsaG028490	0.823594	2.250268e-53	5.448191e-51
MsaG028318	MsaG028490	0.803812	4.912609e-49	7.245465e-47
MsaG028370	MsaG028490	0.807745	7.397851e-50	1.196525e-47
MsaG028328	MsaG028490	0.823329	2.594644e-53	6.236862e-51
MsaG028490	MsaG028821	0.800889	1.952028e-48	2.692707e-46
MsaG028490	MsaG029083	0.803243	6.438087e-49	9.371211e-47
MsaG028490	MsaG029366	0.814808	2.205838e-51	4.243528e-49
MsaG028490	MsaG031693	0.839650	2.576331e-57	9.947141e-55
MsaG028490	MsaG031694	0.812153	8.406053e-51	1.513128e-48
MsaG028490	MsaG032196	0.816449	9.544775e-52	1.914211e-49
MsaG028490	MsaG033246	0.804604	3.366834e-49	5.057540e-47
MsaG028490	MsaG033967	0.813969	3.373632e-51	6.354806e-49
MsaG028490	MsaG034683	0.802666	8.461342e-49	1.215379e-46
MsaG028490	MsaG035152	0.821177	8.147073e-53	1.848558e-50
MsaG028490	MsaG035155	0.808891	4.226213e-50	7.026760e-48
MsaG028490	MsaG035666	0.802599	8.731465e-49	1.252283e-46
MsaG028490	MsaG035816	0.820028	1.491324e-52	3.282479e-50
MsaG028490	MsaG035867	0.838234	5.967746e-57	2.204536e-54
MsaG028490	MsaG036980	0.808919	4.166994e-50	6.933047e-48
MsaG028490	MsaG038467	0.815642	1.442409e-51	2.834070e-49
MsaG028490	MsaG038498	0.811307	1.281333e-50	2.259200e-48
MsaG028490	MsaG039692	0.803072	6.983070e-49	1.012437e-46
MsaG028490	MsaG039773	0.801817	1.262786e-48	1.779027e-46
MsaG028490	MsaG040310	0.803769	5.015462e-49	7.389731e-47
MsaG028490	MsaG041010	0.810370	2.039565e-50	3.514634e-48
MsaG028490	MsaG041066	0.828924	1.228937e-54	3.448885e-52
MsaG028490	MsaG041370	0.822469	4.105266e-53	9.641106e-51
MsaG028490	MsaG041347	0.812984	5.543380e-51	1.018707e-48
MsaG028490	MsaG041599	0.845789	6.127671e-59	2.881840e-56
MsaG028490	MsaG041766	0.806521	1.339441e-49	2.104459e-47
MsaG028490	MsaG042532	0.804704	3.210158e-49	4.833384e-47
MsaG028490	MsaG042799	0.809097	3.819140e-50	6.381593e-48
MsaG028490	MsaG043285	0.800834	2.003146e-48	2.759819e-46
MsaG028490	MsaG043634	0.800185	2.712294e-48	3.682428e-46
MsaG028490	MsaG043787	0.811310	1.279614e-50	2.256307e-48
MsaG028490	MsaG043935	0.816032	1.181767e-51	2.344977e-49
MsaG028490	MsaG043974	0.812962	5.603917e-51	1.029274e-48
MsaG028490	MsaG043975	0.808954	4.096554e-50	6.821582e-48
MsaG028490	MsaG044189	0.809086	3.838895e-50	6.412874e-48
MsaG028490	MsaG044305	0.803694	5.196056e-49	7.642577e-47
MsaG028490	MsaG044307	0.813686	3.893041e-51	7.281043e-49
MsaG028490	MsaG044312	0.808008	6.506445e-50	1.059052e-47
MsaG028490	MsaG044886	0.815221	1.788088e-51	3.475933e-49
MsaG028490	MsaG045314	0.810289	2.123223e-50	3.651485e-48
MsaG028490	MsaG046441	0.825580	7.705910e-54	1.969623e-51
MsaG028490	MsaG047165	0.807321	9.089598e-50	1.455315e-47
MsaG028490	MsaG000632	0.822278	4.544419e-53	1.061773e-50
MsaG028490	MsaG000658	0.830372	5.482592e-55	1.603698e-52
MsaG028490	MsaG008905	0.818970	2.593050e-52	5.550541e-50
MsaG028490	MsaG011535	0.805712	1.978717e-49	3.050007e-47
MsaG028490	MsaG013067	0.802177	1.065739e-48	1.513743e-46
MsaG028490	MsaG018951	0.808638	4.783870e-50	7.905395e-48
MsaG028490	MsaG033743	0.803668	5.262049e-49	7.734969e-47
MsaG028490	MsaG034563	0.813726	3.814602e-51	7.141594e-49
MsaG028490	MsaG032972	0.809101	3.811895e-50	6.370088e-48
MsaG028490	MsaG032466	0.803771	5.009253e-49	7.381026e-47
MsaG028490	MsaG033379	0.800991	1.860544e-48	2.572476e-46
MsaG028490	MsaG030783	0.803647	5.314649e-49	7.808357e-47
MsaG028490	MsaG031525	0.819544	1.921347e-52	4.174964e-50
MsaG028490	MsaG033287	0.800183	2.714330e-48	3.685052e-46
MsaG028490	MsaG036708	0.808075	6.297090e-50	1.026629e-47
MsaG028490	MsaG037988	0.810172	2.249939e-50	3.858302e-48
MsaG028490	MsaG039944	0.809931	2.533093e-50	4.318583e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028490	MtrunA17_Chr2g0281511	30.769	117	79	1	38	154	6	120	7.23e-16	69.7
MsaG028490	MtrunA17_Chr2g0309121	36.145	83	52	1	72	154	38	119	7.61e-15	67.0
MsaG028490	MtrunA17_Chr6g0459981	38.043	92	53	2	53	144	62	149	2.53e-14	66.6
MsaG028490	MtrunA17_Chr5g0430431	35.354	99	55	1	52	150	165	254	1.65e-12	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAAACTTATCACTTCAAAT+AGG	0.238418	5:-63098644	MsaT028490.1:CDS
AAACCGCAAAAGTATGATTA+TGG	0.295816	5:-63099176	MsaT028490.1:CDS
TCACCTAAGTATTTCTCATT+TGG	0.308885	5:+63098618	None:intergenic
CAAACTTATCACTTCAAATA+GGG	0.313955	5:-63098643	MsaT028490.1:CDS
TTGTTTAGCACTTCCCCAAT+AGG	0.356270	5:-63098743	MsaT028490.1:intron
CAGTTGATAGATATCCTATT+GGG	0.375059	5:+63098729	None:intergenic
TCTACGGTCCTTCACGAACT+TGG	0.378944	5:+63098587	None:intergenic
AGTATGATTATGGATGGATT+AGG	0.381484	5:-63099166	MsaT028490.1:CDS
ACAGGAGAGCATTACTTTGC+AGG	0.396717	5:-63098694	MsaT028490.1:CDS
ACTCATTACACAGTGCCATT+TGG	0.408378	5:+63099140	None:intergenic
TAAGTTTGCACTCATATTCT+CGG	0.417716	5:+63098658	None:intergenic
GCAGTTGATAGATATCCTAT+TGG	0.431455	5:+63098728	None:intergenic
GTATGATTATGGATGGATTA+GGG	0.435600	5:-63099165	MsaT028490.1:CDS
ACCTCCACAAAGAGACGATT+GGG	0.451863	5:+63098522	None:intergenic
AGAAATACTTAGGTGAAGAT+TGG	0.462766	5:-63098611	MsaT028490.1:CDS
TCCTCCCAATCGTCTCTTTG+TGG	0.465471	5:-63098526	MsaT028490.1:CDS
GTAATGCTCTCCTGTGTGTC+GGG	0.473972	5:+63098702	None:intergenic
AGGTTGTCGACGCCGTCGTT+AGG	0.482126	5:-63098503	MsaT028490.1:CDS
CGCAAAAGTATGATTATGGA+TGG	0.485297	5:-63099172	MsaT028490.1:CDS
ACATCTCTTGTTGTTAGCTG+TGG	0.496090	5:+63098866	None:intergenic
TATCACCTTTCCTTAGTCTA+CGG	0.505505	5:+63098571	None:intergenic
GGTCCAAATGAGAAATACTT+AGG	0.515401	5:-63098621	MsaT028490.1:CDS
TCGTGAAGGACCGTAGACTA+AGG	0.541590	5:-63098581	MsaT028490.1:CDS
AACCTCCACAAAGAGACGAT+TGG	0.547571	5:+63098521	None:intergenic
CAACAAGAGATGTCAAGTAA+TGG	0.551729	5:-63098856	MsaT028490.1:intron
CTACGGTCCTTCACGAACTT+GGG	0.555110	5:+63098588	None:intergenic
GTTCAAGGGAAATACAATCA+AGG	0.557132	5:-63098970	MsaT028490.1:CDS
TCCCAATCGTCTCTTTGTGG+AGG	0.560244	5:-63098523	MsaT028490.1:CDS
AGTAATGCTCTCCTGTGTGT+CGG	0.561176	5:+63098701	None:intergenic
TGGATGAAGTAGGAAGTTCA+AGG	0.576606	5:-63098985	MsaT028490.1:intron
GGATGGATTAGGGATCCAAA+TGG	0.577469	5:-63099155	MsaT028490.1:CDS
AAACTTATCACTTCAAATAG+GGG	0.599416	5:-63098642	MsaT028490.1:CDS
GGATGAAGTAGGAAGTTCAA+GGG	0.644562	5:-63098984	MsaT028490.1:intron
CAACTGCTTACCCGACACAC+AGG	0.661269	5:-63098712	MsaT028490.1:CDS
TCCACAAAGAGACGATTGGG+AGG	0.661851	5:+63098525	None:intergenic
AGTTGATAGATATCCTATTG+GGG	0.667078	5:+63098730	None:intergenic
AAGGACCGTAGACTAAGGAA+AGG	0.676015	5:-63098576	MsaT028490.1:CDS
AAACTATAATATCCTAACGA+CGG	0.684003	5:+63098491	None:intergenic
AGATTGGCCCAAGTTCGTGA+AGG	0.684958	5:-63098595	MsaT028490.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	63098494	63099228	63098494	ID=MsaG028490
Chr5	mRNA	63098494	63099228	63098494	ID=MsaT028490.1;Parent=MsaG028490
Chr5	exon	63098494	63098757	63098494	ID=MsaT028490.1.exon3;Parent=MsaT028490.1
Chr5	CDS	63098494	63098757	63098494	ID=cds.MsaT028490.1;Parent=MsaT028490.1
Chr5	exon	63098857	63098995	63098857	ID=MsaT028490.1.exon2;Parent=MsaT028490.1
Chr5	CDS	63098857	63098995	63098857	ID=cds.MsaT028490.1;Parent=MsaT028490.1
Chr5	exon	63099149	63099228	63099149	ID=MsaT028490.1.exon1;Parent=MsaT028490.1
Chr5	CDS	63099149	63099228	63099149	ID=cds.MsaT028490.1;Parent=MsaT028490.1

Gene Sequence

>MsaT028490.1

ATGTTCTCAGATTCTTCATCTTACTTCAAGAAACCGCAAAAGTATGATTATGGATGGATTAGGGATCCAAATGGCACTGTGAAGTTCAAGGGAAATACAATCAAGGAAGAAGTTATTGATTCTGATTCTGAAGATGATTGTGTAGAAATTGCTGATTATGATCATTTTGAGAGGAATGTCACTTATGCCACAGCTAACAACAAGAGATGTCAAGTAATGCACTTCCCCAATAGGATATCTATCAACTGCTTACCCGACACACAGGAGAGCATTACTTTGCAGGATGTGCATAATCTCCGAGAATATGAGTGCAAACTTATCACTTCAAATAGGGGTCCAAATGAGAAATACTTAGGTGAAGATTGGCCCAAGTTCGTGAAGGACCGTAGACTAAGGAAAGGTGATAAGTTGATATTTGATCTTTGTGCTCCTCCCAATCGTCTCTTTGTGGAGGTTGTCGACGCCGTCGTTAGGATATTATAG

Protein sequence

>MsaT028490.1

MFSDSSSYFKKPQKYDYGWIRDPNGTVKFKGNTIKEEVIDSDSEDDCVEIADYDHFERNVTYATANNKRCQVMHFPNRISINCLPDTQESITLQDVHNLREYECKLITSNRGPNEKYLGEDWPKFVKDRRLRKGDKLIFDLCAPPNRLFVEVVDAVVRIL*