Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028491 | XP_024630715.1 | 77.544 | 285 | 44 | 4 | 1 | 285 | 1 | 265 | 2.00e-140 | 427 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028491 | sp|Q9SZL8|FRS5_ARATH | 25.217 | 230 | 128 | 5 | 287 | 473 | 406 | 634 | 1.16e-14 | 81.3 |
MsaG028491 | sp|Q9SZL8|FRS5_ARATH | 31.863 | 204 | 111 | 7 | 72 | 267 | 6 | 189 | 1.52e-12 | 74.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028491 | tr|A0A396JNK0|A0A396JNK0_MEDTR | 77.224 | 281 | 44 | 4 | 1 | 281 | 1 | 261 | 1.40e-140 | 419 |
Gene ID | Type | Classification |
---|---|---|
MsaG028491 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028491 | MtrunA17_Chr1g0171741 | 77.224 | 281 | 44 | 4 | 1 | 281 | 1 | 261 | 2.71e-144 | 419 |
MsaG028491 | MtrunA17_Chr2g0308841 | 35.874 | 223 | 100 | 3 | 293 | 472 | 4 | 226 | 5.29e-38 | 141 |
MsaG028491 | MtrunA17_Chr1g0203051 | 37.158 | 183 | 112 | 3 | 105 | 285 | 31 | 212 | 4.54e-29 | 122 |
MsaG028491 | MtrunA17_Chr1g0203051 | 30.233 | 215 | 107 | 3 | 289 | 460 | 407 | 621 | 1.36e-25 | 111 |
MsaG028491 | MtrunA17_Chr8g0389811 | 32.812 | 192 | 117 | 4 | 74 | 263 | 14 | 195 | 1.24e-26 | 107 |
MsaG028491 | MtrunA17_Chr2g0287651 | 29.060 | 351 | 193 | 10 | 289 | 594 | 405 | 744 | 2.14e-26 | 115 |
MsaG028491 | MtrunA17_Chr2g0287651 | 29.121 | 182 | 118 | 3 | 128 | 305 | 47 | 221 | 5.37e-19 | 91.7 |
MsaG028491 | MtrunA17_Chr2g0331371 | 33.880 | 183 | 109 | 4 | 103 | 284 | 8 | 179 | 1.44e-23 | 99.4 |
MsaG028491 | MtrunA17_Chr5g0448761 | 25.342 | 292 | 166 | 7 | 287 | 532 | 397 | 682 | 2.04e-18 | 89.7 |
MsaG028491 | MtrunA17_Chr5g0448761 | 34.848 | 132 | 83 | 2 | 157 | 285 | 64 | 195 | 5.08e-14 | 75.5 |
MsaG028491 | MtrunA17_Chr6g0473421 | 35.345 | 116 | 72 | 2 | 113 | 227 | 17 | 130 | 5.02e-18 | 81.6 |
MsaG028491 | MtrunA17_Chr3g0118611 | 23.642 | 313 | 194 | 6 | 230 | 498 | 215 | 526 | 7.31e-18 | 87.8 |
MsaG028491 | MtrunA17_Chr5g0448511 | 25.532 | 235 | 131 | 4 | 282 | 473 | 164 | 397 | 3.55e-16 | 82.0 |
MsaG028491 | MtrunA17_Chr1g0202341 | 25.532 | 235 | 125 | 7 | 285 | 473 | 379 | 609 | 5.42e-15 | 78.6 |
MsaG028491 | MtrunA17_Chr2g0294841 | 35.556 | 135 | 78 | 4 | 159 | 285 | 51 | 184 | 1.51e-14 | 77.0 |
MsaG028491 | MtrunA17_Chr5g0440451 | 24.111 | 253 | 150 | 4 | 287 | 498 | 378 | 629 | 3.78e-13 | 72.8 |
MsaG028491 | MtrunA17_Chr1g0172931 | 34.951 | 103 | 66 | 1 | 133 | 234 | 56 | 158 | 7.15e-13 | 67.0 |
MsaG028491 | MtrunA17_Chr2g0276841 | 31.818 | 132 | 84 | 4 | 159 | 285 | 76 | 206 | 1.77e-12 | 70.5 |
MsaG028491 | MtrunA17_Chr2g0290391 | 29.545 | 132 | 91 | 1 | 159 | 288 | 57 | 188 | 2.71e-12 | 70.1 |
MsaG028491 | MtrunA17_Chr6g0458391 | 40.367 | 109 | 62 | 3 | 159 | 266 | 231 | 337 | 4.09e-12 | 69.3 |
MsaG028491 | MtrunA17_Chr1g0198761 | 30.709 | 127 | 78 | 3 | 150 | 267 | 45 | 170 | 2.67e-11 | 66.6 |
MsaG028491 | MtrunA17_Chr1g0198761 | 22.848 | 302 | 188 | 7 | 326 | 597 | 450 | 736 | 3.97e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG028491 | AT4G38180.1 | 25.217 | 230 | 128 | 5 | 287 | 473 | 406 | 634 | 1.18e-15 | 81.3 |
MsaG028491 | AT4G38180.1 | 31.863 | 204 | 111 | 7 | 72 | 267 | 6 | 189 | 1.54e-13 | 74.3 |
MsaG028491 | AT4G38170.1 | 24.569 | 232 | 131 | 4 | 285 | 473 | 169 | 399 | 2.71e-13 | 73.2 |
MsaG028491 | AT1G10240.2 | 32.836 | 134 | 80 | 4 | 159 | 285 | 54 | 184 | 3.65e-13 | 73.2 |
MsaG028491 | AT1G10240.1 | 32.836 | 134 | 80 | 4 | 159 | 285 | 54 | 184 | 3.65e-13 | 73.2 |
MsaG028491 | AT2G27110.2 | 23.810 | 231 | 134 | 5 | 287 | 476 | 353 | 582 | 2.50e-12 | 70.5 |
MsaG028491 | AT2G27110.1 | 23.810 | 231 | 134 | 5 | 287 | 476 | 353 | 582 | 2.50e-12 | 70.5 |
MsaG028491 | AT2G27110.3 | 23.810 | 231 | 134 | 5 | 287 | 476 | 208 | 437 | 4.34e-12 | 69.7 |
MsaG028491 | AT5G28530.3 | 28.571 | 126 | 88 | 1 | 165 | 288 | 67 | 192 | 1.14e-11 | 68.2 |
MsaG028491 | AT5G28530.2 | 28.571 | 126 | 88 | 1 | 165 | 288 | 67 | 192 | 1.14e-11 | 68.2 |
MsaG028491 | AT5G28530.1 | 28.571 | 126 | 88 | 1 | 165 | 288 | 67 | 192 | 1.18e-11 | 68.2 |
MsaG028491 | AT5G28530.4 | 28.571 | 126 | 88 | 1 | 165 | 288 | 67 | 192 | 1.73e-11 | 67.8 |
MsaG028491 | AT5G28530.5 | 28.571 | 126 | 88 | 1 | 165 | 288 | 67 | 192 | 1.77e-11 | 67.8 |
Find 152 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAATGGTCGTCCGACATTT+TGG | 0.169765 | 5:-63100953 | MsaT028491.1:CDS |
GCATTGGACCTGACTGGTTT+AGG | 0.190644 | 5:-63102654 | MsaT028491.1:CDS |
TTTGACTGTGAGCAATTTAT+TGG | 0.193198 | 5:-63103087 | MsaT028491.1:CDS |
CATTGGACCTGACTGGTTTA+GGG | 0.232440 | 5:-63102653 | MsaT028491.1:CDS |
TGAATCAACGATTTCACTTC+TGG | 0.242696 | 5:+63101591 | None:intergenic |
AGAGGTTAGGGTTGAGGAGG+GGG | 0.271498 | 5:-63103007 | MsaT028491.1:CDS |
CAATTTATTGGGCCTGAAAA+AGG | 0.279570 | 5:-63103075 | MsaT028491.1:CDS |
GCAGACTTTGAAAGTGATTA+TGG | 0.279767 | 5:-63101347 | MsaT028491.1:CDS |
ATCAAAGTCACTAATGTTTC+CGG | 0.287438 | 5:+63102897 | None:intergenic |
AGTGAAATCGTTGATTCATT+TGG | 0.301182 | 5:-63101586 | MsaT028491.1:CDS |
CGTCCACCGCGTCATCTTCA+AGG | 0.302526 | 5:+63100766 | None:intergenic |
TGAGCATATCATTGCAGTTT+TGG | 0.306428 | 5:-63101060 | MsaT028491.1:CDS |
TCTAATGTCTACCCCTTCTT+CGG | 0.315940 | 5:+63103041 | None:intergenic |
TCTTCTGCAATGATTGTATC+TGG | 0.329553 | 5:-63101224 | MsaT028491.1:CDS |
TGACATCCACATCGAGTATA+AGG | 0.341168 | 5:+63102420 | None:intergenic |
TTTGATGAAGGGGTCAATTA+TGG | 0.349566 | 5:-63102880 | MsaT028491.1:CDS |
TTGGATTGCACGACAACAAT+TGG | 0.350449 | 5:-63101567 | MsaT028491.1:CDS |
TGGATGTCAAGCTATGTTTC+GGG | 0.355654 | 5:-63102406 | MsaT028491.1:CDS |
GAGGTTAGGGTTGAGGAGGG+GGG | 0.355934 | 5:-63103006 | MsaT028491.1:CDS |
CACTATCAACTTGGATATGT+TGG | 0.358557 | 5:+63102691 | None:intergenic |
GAGAATCTGAAGAAGAGGTT+AGG | 0.374436 | 5:-63103020 | MsaT028491.1:CDS |
ACGGAGCATTGATGTCTAGA+TGG | 0.377745 | 5:-63100908 | MsaT028491.1:CDS |
TTTGTAAGGAGAATTGAGTT+TGG | 0.379815 | 5:-63102624 | MsaT028491.1:CDS |
TTGACTGTGAGCAATTTATT+GGG | 0.384793 | 5:-63103086 | MsaT028491.1:CDS |
ACTTATGCCTCTCATTTGTT+CGG | 0.395053 | 5:+63100803 | None:intergenic |
GCGGGCAACAAAGACATATA+CGG | 0.395519 | 5:-63101518 | MsaT028491.1:CDS |
GTGGATGTCAAGCTATGTTT+CGG | 0.399890 | 5:-63102407 | MsaT028491.1:CDS |
TTTGCCATAGAGAAGGATAT+AGG | 0.402899 | 5:-63102485 | MsaT028491.1:CDS |
AACACCACCACCTCTACCTT+TGG | 0.405185 | 5:+63100713 | None:intergenic |
GGGAATCTTGTAGAGAGAAC+TGG | 0.407097 | 5:+63101320 | None:intergenic |
CAATCCGACATTGAAGACTA+TGG | 0.411412 | 5:-63102818 | MsaT028491.1:CDS |
CACTTGAAAATGTCTTCTGC+AGG | 0.413618 | 5:+63101119 | None:intergenic |
CACCAGAGAGCTCAAGCTTA+GGG | 0.416448 | 5:+63101300 | None:intergenic |
AAGAGGTTAGGGTTGAGGAG+GGG | 0.416967 | 5:-63103008 | MsaT028491.1:CDS |
GCACCAGAGAGCTCAAGCTT+AGG | 0.421767 | 5:+63101299 | None:intergenic |
AATGTTGAGTTTGACGAAGA+TGG | 0.422787 | 5:-63102934 | MsaT028491.1:CDS |
TGAAGAAGAGGTTAGGGTTG+AGG | 0.425594 | 5:-63103013 | MsaT028491.1:CDS |
AATCCCTTGTAATGAGTAGA+TGG | 0.426360 | 5:-63101010 | MsaT028491.1:CDS |
GTTTAGGGGCTCTATTTGTA+AGG | 0.428054 | 5:-63102638 | MsaT028491.1:CDS |
TGTCAGAGGATGGAGTCATT+TGG | 0.432633 | 5:-63101092 | MsaT028491.1:CDS |
AAGTTGCTATATTGCAAATC+AGG | 0.434305 | 5:-63102531 | MsaT028491.1:CDS |
CTAATGTCTACCCCTTCTTC+GGG | 0.435670 | 5:+63103042 | None:intergenic |
TGCTGATGACATTGCGGCAT+TGG | 0.435837 | 5:-63102670 | MsaT028491.1:CDS |
AGAATCTGAAGAAGAGGTTA+GGG | 0.440423 | 5:-63103019 | MsaT028491.1:CDS |
AAGATGGAAGTGAGGCAGAA+GGG | 0.440842 | 5:-63102758 | MsaT028491.1:CDS |
CCTTTGGTTCTGACAGAAGC+TGG | 0.441218 | 5:+63100729 | None:intergenic |
TTCCCTAAGCTTGAGCTCTC+TGG | 0.444014 | 5:-63101302 | MsaT028491.1:CDS |
GAGGCAGAAGGGGTAGACTA+TGG | 0.449884 | 5:-63102747 | MsaT028491.1:CDS |
CTAAATTGACCCACAAATGC+AGG | 0.452033 | 5:+63101652 | None:intergenic |
AACATTAGTGACTTTGATGA+AGG | 0.453377 | 5:-63102892 | MsaT028491.1:CDS |
CATAGGCGATCCTGCATTTG+TGG | 0.454886 | 5:-63101662 | MsaT028491.1:intron |
TGTTCTACATGTGGTGATCC+TGG | 0.457457 | 5:-63100651 | MsaT028491.1:CDS |
CAATTTAGAAAGTGTATGTT+GGG | 0.461610 | 5:-63101637 | MsaT028491.1:CDS |
GATACACGCCACTCCCGGTC+TGG | 0.462923 | 5:+63101149 | None:intergenic |
GAAGATGGAAGTGAGGCAGA+AGG | 0.463781 | 5:-63102759 | MsaT028491.1:CDS |
GAAGAGGTTAGGGTTGAGGA+GGG | 0.464161 | 5:-63103009 | MsaT028491.1:CDS |
CCACATCGAGTATAAGGTCT+TGG | 0.471265 | 5:+63102426 | None:intergenic |
TATGAGTTCTATAAATCCTA+TGG | 0.471575 | 5:-63102585 | MsaT028491.1:CDS |
CCACTAGTGGAACAAACAAT+AGG | 0.472273 | 5:-63100686 | MsaT028491.1:CDS |
CAAGTGTGCTTGTCAGAGGA+TGG | 0.478705 | 5:-63101102 | MsaT028491.1:CDS |
TTGTCCATCTACTCATTACA+AGG | 0.479590 | 5:+63101006 | None:intergenic |
ACATGAGGCCAGACCGGGAG+TGG | 0.484974 | 5:-63101157 | MsaT028491.1:CDS |
ATCACCACATGTAGAACAAT+GGG | 0.486133 | 5:+63100656 | None:intergenic |
GTATTAGGTAGCAGCTCAAA+TGG | 0.496741 | 5:-63100969 | MsaT028491.1:CDS |
TCAATTTAGAAAGTGTATGT+TGG | 0.499534 | 5:-63101638 | MsaT028491.1:CDS |
CCTATTGTTTGTTCCACTAG+TGG | 0.502065 | 5:+63100686 | None:intergenic |
TGTCATCAGCACTATCAACT+TGG | 0.502615 | 5:+63102682 | None:intergenic |
CGGGCAACAAAGACATATAC+GGG | 0.504222 | 5:-63101517 | MsaT028491.1:CDS |
TGATGACTACAAAGAGCAAA+TGG | 0.505974 | 5:-63100853 | MsaT028491.1:CDS |
CGGAGCATTGATGTCTAGAT+GGG | 0.507342 | 5:-63100907 | MsaT028491.1:CDS |
TTTGACGAAGATGGAGGTAG+AGG | 0.507926 | 5:-63102925 | MsaT028491.1:CDS |
AGATGGAAGTGATGAAGAAG+TGG | 0.515597 | 5:-63102845 | MsaT028491.1:CDS |
AGATGGAAGTGAGGCAGAAG+GGG | 0.516008 | 5:-63102757 | MsaT028491.1:CDS |
GATGGAGGTAGAGGGCAATC+CGG | 0.516291 | 5:-63102916 | MsaT028491.1:CDS |
ATGTTGGGTGACTATGAGAT+TGG | 0.522414 | 5:-63101622 | MsaT028491.1:CDS |
GAATCCATTCGCTCTTCCAT+AGG | 0.524771 | 5:+63102569 | None:intergenic |
TGAGTACCAACCGTTCTTTG+AGG | 0.527248 | 5:+63100609 | None:intergenic |
AGAAGAGGTTAGGGTTGAGG+AGG | 0.527981 | 5:-63103010 | MsaT028491.1:CDS |
TTTATTTCAGGAACATGTGC+CGG | 0.529734 | 5:-63100478 | MsaT028491.1:intron |
TAAGTACATGAGGCCAGACC+GGG | 0.532082 | 5:-63101162 | MsaT028491.1:CDS |
TATGGTGACATGGAAGAAGA+TGG | 0.533811 | 5:-63102862 | MsaT028491.1:CDS |
AAAGGTAGAGGTGGTGGTGT+TGG | 0.534503 | 5:-63100711 | MsaT028491.1:CDS |
AAATCCTATGGAAGAGCGAA+TGG | 0.535778 | 5:-63102573 | MsaT028491.1:CDS |
GGTGGTGTTGGTTCCACTAG+TGG | 0.536621 | 5:-63100699 | MsaT028491.1:CDS |
CATTAGAGAATCTGAAGAAG+AGG | 0.538773 | 5:-63103025 | MsaT028491.1:CDS |
TATGGTGACATGGAAGAAGA+TGG | 0.540056 | 5:-63102729 | MsaT028491.1:CDS |
ATAAGTACATGAGGCCAGAC+CGG | 0.542402 | 5:-63101163 | MsaT028491.1:CDS |
TATGATGGAAGTGATTATGA+AGG | 0.544947 | 5:-63102964 | MsaT028491.1:CDS |
GGTGATGGAAGTCCCGAAGA+AGG | 0.546443 | 5:-63103054 | MsaT028491.1:CDS |
ATACTAGCTCATGGTTGTGC+TGG | 0.547334 | 5:+63102334 | None:intergenic |
CTACTCATTACAAGGGATTG+AGG | 0.547911 | 5:+63101014 | None:intergenic |
ATAGGCGATCCTGCATTTGT+GGG | 0.550003 | 5:-63101661 | MsaT028491.1:intron |
AGAACCAAAGGTAGAGGTGG+TGG | 0.551384 | 5:-63100717 | MsaT028491.1:CDS |
AGTGGTAACATGGAATATGA+TGG | 0.552792 | 5:-63102979 | MsaT028491.1:CDS |
GACTATGGAAGTGATGAAGA+AGG | 0.553402 | 5:-63102803 | MsaT028491.1:CDS |
AACATATACGAAGAGAAAGC+GGG | 0.556156 | 5:-63101536 | MsaT028491.1:CDS |
TCGCACCTTGCTACAAGATA+CGG | 0.560212 | 5:-63100927 | MsaT028491.1:CDS |
ACATTTGTTTGCCATAGAGA+AGG | 0.560252 | 5:-63102492 | MsaT028491.1:CDS |
ACTATGGAAGTGATGAAGAA+GGG | 0.562918 | 5:-63102802 | MsaT028491.1:intron |
CATTAGTGACTTTGATGAAG+GGG | 0.564858 | 5:-63102890 | MsaT028491.1:CDS |
CCAGCTTCTGTCAGAACCAA+AGG | 0.567748 | 5:-63100729 | MsaT028491.1:CDS |
TAAACAGTTTCACAAATCGT+TGG | 0.568247 | 5:-63102377 | MsaT028491.1:CDS |
GCTGCTACCTAATACGTCCT+TGG | 0.570396 | 5:+63100977 | None:intergenic |
TAAATGATACACGCCACTCC+CGG | 0.571008 | 5:+63101144 | None:intergenic |
GTGATGGAAGTCCCGAAGAA+GGG | 0.571019 | 5:-63103053 | MsaT028491.1:CDS |
ATTGCGGCATTGGACCTGAC+TGG | 0.574500 | 5:-63102660 | MsaT028491.1:CDS |
CAACCATGAGCTAGTATCGC+AGG | 0.574912 | 5:-63102328 | MsaT028491.1:CDS |
AGAACTCATATGCAATCTCT+AGG | 0.576256 | 5:+63102598 | None:intergenic |
ATAGAGCCCCTAAACCAGTC+AGG | 0.576641 | 5:+63102646 | None:intergenic |
TCTGTCAGAACCAAAGGTAG+AGG | 0.585093 | 5:-63100723 | MsaT028491.1:CDS |
ATACAATCATTGCAGAAGAT+CGG | 0.585441 | 5:+63101228 | None:intergenic |
ATTGGACCTGACTGGTTTAG+GGG | 0.585884 | 5:-63102652 | MsaT028491.1:CDS |
ACTTCCATAGTCTTCAATGT+CGG | 0.590482 | 5:+63102814 | None:intergenic |
ATAAACTCCATAAAATCCGC+CGG | 0.595530 | 5:+63100459 | None:intergenic |
GCTTGAGCTCTCTGGTGCAA+AGG | 0.598311 | 5:-63101294 | MsaT028491.1:CDS |
GTCATCTTCAAGGTTTGTCG+TGG | 0.598881 | 5:+63100776 | None:intergenic |
ACATTAGTGACTTTGATGAA+GGG | 0.602492 | 5:-63102891 | MsaT028491.1:CDS |
TTGACGAAGATGGAGGTAGA+GGG | 0.608903 | 5:-63102924 | MsaT028491.1:CDS |
GAAAACATGTCCTCAAAGAA+CGG | 0.609153 | 5:-63100619 | MsaT028491.1:CDS |
ATTGCTCACAGTCAAAAGCT+CGG | 0.610556 | 5:+63103094 | None:intergenic |
ACATGTCCTCAAAGAACGGT+TGG | 0.611044 | 5:-63100615 | MsaT028491.1:CDS |
GATCACCACATGTAGAACAA+TGG | 0.617533 | 5:+63100655 | None:intergenic |
GTCAGAACCAAAGGTAGAGG+TGG | 0.620505 | 5:-63100720 | MsaT028491.1:CDS |
GTTCCTGCGATACTAGCTCA+TGG | 0.621145 | 5:+63102325 | None:intergenic |
AAACATATACGAAGAGAAAG+CGG | 0.622651 | 5:-63101537 | MsaT028491.1:CDS |
TTGAAAGCCGAACAAATGAG+AGG | 0.623945 | 5:-63100810 | MsaT028491.1:CDS |
CCAAGACCTTATACTCGATG+TGG | 0.624870 | 5:-63102426 | MsaT028491.1:CDS |
TGTCCATCTACTCATTACAA+GGG | 0.625754 | 5:+63101007 | None:intergenic |
TGATGGAAGTCCCGAAGAAG+GGG | 0.626647 | 5:-63103052 | MsaT028491.1:CDS |
ATGCTCCGTATCTTGTAGCA+AGG | 0.628100 | 5:+63100922 | None:intergenic |
CATTGAAGAAGATGGAAGTG+AGG | 0.629232 | 5:-63102766 | MsaT028491.1:intron |
CTGGATCGAAAGAAACATGT+GGG | 0.636908 | 5:-63101205 | MsaT028491.1:CDS |
ACTGCAATGATATGCTCACA+TGG | 0.637565 | 5:+63101065 | None:intergenic |
GTTGAGTTTGACGAAGATGG+AGG | 0.639808 | 5:-63102931 | MsaT028491.1:CDS |
TCTGGATCGAAAGAAACATG+TGG | 0.640492 | 5:-63101206 | MsaT028491.1:CDS |
ACTTGAAAATGTCTTCTGCA+GGG | 0.641856 | 5:+63101120 | None:intergenic |
GTCACCCATTGTTCTACATG+TGG | 0.642108 | 5:-63100660 | MsaT028491.1:CDS |
AATGGATTCACAGTTCGCAA+AGG | 0.645718 | 5:-63102555 | MsaT028491.1:CDS |
AGGGGTCAATTATGGTGACA+TGG | 0.648973 | 5:-63102872 | MsaT028491.1:CDS |
ATACAGTTAATAAGTACATG+AGG | 0.652022 | 5:-63101172 | MsaT028491.1:CDS |
AGGGGTAGACTATGGTGACA+TGG | 0.659480 | 5:-63102739 | MsaT028491.1:CDS |
TCTAAATTAGTCGTTGACAA+CGG | 0.661772 | 5:-63100876 | MsaT028491.1:CDS |
GGAGCATTGATGTCTAGATG+GGG | 0.662486 | 5:-63100906 | MsaT028491.1:CDS |
CTGAAGCGAATAGAAAGCGT+CGG | 0.664285 | 5:-63102449 | MsaT028491.1:CDS |
ATTTCAGGAACATGTGCCGG+CGG | 0.666355 | 5:-63100475 | MsaT028491.1:intron |
AGGTGCGAGTCCCAAAATGT+CGG | 0.670061 | 5:+63100942 | None:intergenic |
CTAGTATCGCAGGAACATTG+TGG | 0.682923 | 5:-63102318 | MsaT028491.1:CDS |
GAGCATTGATGTCTAGATGG+GGG | 0.687975 | 5:-63100905 | MsaT028491.1:CDS |
GACAAACCTTGAAGATGACG+CGG | 0.713712 | 5:-63100772 | MsaT028491.1:CDS |
AAACCTTGAAGATGACGCGG+TGG | 0.719654 | 5:-63100769 | MsaT028491.1:CDS |
TGATAGTGCTGATGACATTG+CGG | 0.734087 | 5:-63102676 | MsaT028491.1:CDS |
GGGCAACAAAGACATATACG+GGG | 0.793482 | 5:-63101516 | MsaT028491.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 63100455 | 63103124 | 63100455 | ID=MsaG028491 |
Chr5 | mRNA | 63100455 | 63103124 | 63100455 | ID=MsaT028491.1;Parent=MsaG028491 |
Chr5 | exon | 63100455 | 63100490 | 63100455 | ID=MsaT028491.1.exon5;Parent=MsaT028491.1 |
Chr5 | CDS | 63100455 | 63100490 | 63100455 | ID=cds.MsaT028491.1;Parent=MsaT028491.1 |
Chr5 | exon | 63100581 | 63101379 | 63100581 | ID=MsaT028491.1.exon4;Parent=MsaT028491.1 |
Chr5 | CDS | 63100581 | 63101379 | 63100581 | ID=cds.MsaT028491.1;Parent=MsaT028491.1 |
Chr5 | exon | 63101499 | 63101679 | 63101499 | ID=MsaT028491.1.exon3;Parent=MsaT028491.1 |
Chr5 | CDS | 63101499 | 63101679 | 63101499 | ID=cds.MsaT028491.1;Parent=MsaT028491.1 |
Chr5 | exon | 63102250 | 63102780 | 63102250 | ID=MsaT028491.1.exon2;Parent=MsaT028491.1 |
Chr5 | CDS | 63102250 | 63102780 | 63102250 | ID=cds.MsaT028491.1;Parent=MsaT028491.1 |
Chr5 | exon | 63102803 | 63103124 | 63102803 | ID=MsaT028491.1.exon1;Parent=MsaT028491.1 |
Chr5 | CDS | 63102803 | 63103124 | 63102803 | ID=cds.MsaT028491.1;Parent=MsaT028491.1 |
Gene Sequence |
Protein sequence |