AlfalfaGEDB | MsaG028503

M. sativa ssp. caerulea / MsaG028503

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028503	XP_003616032.1	98.976	293	3	0	1	293	66	358	0.0	596

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028503	sp\|Q6S4P4\|RF2B_ORYSJ	58.020	293	100	9	19	293	42	329	7.30e-94	283

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028503	tr\|G7K0T5\|G7K0T5_MEDTR	98.976	293	3	0	1	293	66	358	0.0	596

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG028503	TF	bZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000157	MsaG028503	0.822646	3.736559e-53	8.817100e-51
MsaG000180	MsaG028503	0.827977	2.075089e-54	5.671025e-52
MsaG000193	MsaG028503	0.803449	5.838375e-49	8.538713e-47
MsaG000220	MsaG028503	0.812994	5.514966e-51	1.013739e-48
MsaG000281	MsaG028503	0.815945	1.235412e-51	2.446120e-49
MsaG000288	MsaG028503	0.810305	2.105889e-50	3.623165e-48
MsaG000326	MsaG028503	0.860968	2.810774e-63	2.267229e-60
MsaG000342	MsaG028503	0.825815	6.780832e-54	1.744635e-51
MsaG000346	MsaG028503	0.827527	2.659183e-54	7.176092e-52
MsaG000382	MsaG028503	0.833347	1.019105e-55	3.249971e-53

Showing 1 to 10 of 670 entries

Previous1 2 3 4 5…67Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028503	MtrunA17_Chr5g0432701	98.976	293	3	0	1	293	66	358	0.0	596
MsaG028503	MtrunA17_Chr3g0107491	70.336	327	61	6	1	293	53	377	1.98e-156	441
MsaG028503	MtrunA17_Chr3g0128781	54.745	274	109	5	26	293	47	311	1.23e-88	266
MsaG028503	MtrunA17_Chr2g0329551	55.140	214	52	5	24	193	107	320	5.74e-60	196
MsaG028503	MtrunA17_Chr6g0463571	60.571	175	55	6	35	203	95	261	1.12e-53	177
MsaG028503	MtrunA17_Chr4g0036071	73.684	114	30	0	79	192	345	458	5.43e-49	169
MsaG028503	MtrunA17_Chr1g0156051	56.944	144	52	2	59	192	342	485	1.21e-31	123
MsaG028503	MtrunA17_Chr2g0316551	51.064	94	46	0	93	186	207	300	1.51e-22	95.9
MsaG028503	MtrunA17_Chr2g0325131	39.869	153	79	4	94	243	191	333	1.09e-21	93.2
MsaG028503	MtrunA17_Chr4g0040891	48.387	93	48	0	94	186	194	286	1.38e-20	90.1

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028503	AT2G40620.1	52.493	341	91	11	3	293	48	367	2.93e-91	275
MsaG028503	AT1G06850.1	57.621	269	87	7	29	282	70	326	3.62e-88	266
MsaG028503	AT2G31370.5	51.092	229	70	5	24	212	94	320	5.58e-62	201
MsaG028503	AT2G31370.2	51.092	229	70	5	24	212	94	320	2.26e-61	200
MsaG028503	AT2G31370.4	51.092	229	70	5	24	212	94	320	2.26e-61	200
MsaG028503	AT2G31370.1	51.092	229	70	5	24	212	94	320	2.26e-61	200
MsaG028503	AT2G31370.7	51.092	229	70	5	24	212	94	320	2.26e-61	200
MsaG028503	AT2G31370.3	51.092	229	70	5	24	212	94	320	2.26e-61	200
MsaG028503	AT2G31370.6	51.092	229	70	5	24	212	94	320	2.26e-61	200
MsaG028503	AT1G06070.1	52.358	212	67	4	24	202	108	318	9.13e-57	188

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGTATAGTGTCAGT+TGG	0.558403	5:-63256543	None:intergenic
AACATCCAGTTGCCACTATT+TGG	0.262115	5:+63257372	MsaT028503.1:CDS
AACCTGGTATAGTGTCAGTT+GGG	0.543208	5:-63256542	None:intergenic
AATATGAATGAGAATTGGTT+TGG	0.494880	5:-63257431	None:intergenic
ACGGCGAGCCTCGATGAGAT+CGG	0.578645	5:+63254370	MsaT028503.1:CDS
AGAAGAATCCGGTGAGGTCG+AGG	0.509126	5:+63254479	MsaT028503.1:CDS
AGATCCGGGTGGAAACGATG+AGG	0.696064	5:+63254453	MsaT028503.1:CDS
AGCTATGCCTCCTGATAAAT+TGG	0.296982	5:+63254564	MsaT028503.1:CDS
AGCTCAGCCAATTTATCAGG+AGG	0.617494	5:-63254571	None:intergenic
AGGCGGAGAAGAATCCGGTG+AGG	0.721189	5:+63254473	MsaT028503.1:CDS

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	63254325	63257578	63254325	ID=MsaG028503
Chr5	mRNA	63254325	63257578	63254325	ID=MsaT028503.1;Parent=MsaG028503
Chr5	exon	63254325	63254623	63254325	ID=MsaT028503.1.exon1;Parent=MsaT028503.1
Chr5	CDS	63254325	63254623	63254325	ID=cds.MsaT028503.1;Parent=MsaT028503.1
Chr5	exon	63256429	63256561	63256429	ID=MsaT028503.1.exon2;Parent=MsaT028503.1
Chr5	CDS	63256429	63256561	63256429	ID=cds.MsaT028503.1;Parent=MsaT028503.1
Chr5	exon	63256967	63257051	63256967	ID=MsaT028503.1.exon3;Parent=MsaT028503.1
Chr5	CDS	63256967	63257051	63256967	ID=cds.MsaT028503.1;Parent=MsaT028503.1
Chr5	exon	63257214	63257578	63257214	ID=MsaT028503.1.exon4;Parent=MsaT028503.1
Chr5	CDS	63257214	63257578	63257214	ID=cds.MsaT028503.1;Parent=MsaT028503.1

Gene Sequence

>MsaT028503.1

ATGATGGACCTCTCCCCTTCCGATCCATTCACCGGCGGATCATCAACGGCGAGCCTCGATGAGATCGGATCCGAAGATGACTTGTTCTCAACGTACATTGACATGGATAAGCTTGGAGATGGTGGAGCAGATCCGGGTGGAAACGATGAGGCGGAGAAGAATCCGGTGAGGTCGAGGCATCGGCATAGTAATTCGGTTGATGGGTCGAGTTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGTCTGTTGATCCTAAGCGTGCCAAAAGAATACTTGCTAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGCTATATACATGAACTAGAACGCAAAGTTCAGACCCTACAGACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATACCAGCGAGACACAACAGGTCTGAGTACTGAAAATACTGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCACATCTCCGTGATGCTCTTAATGATGCATTGAAGAAAGAAGTTGAGAGATTGAAGGTTGCTACTGGAGATATAATGAGCCACACTGAATCTTTTAATCTTGGTATGCACCAAATGCAATTTACAGAATCAAATTACGCTCCAATTCCACCACAAGGTCCTTCTGGTCACCGGAACATCCAGTTGCCACTATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACCAATTCTCATTCATATTCAGAATTATTACAAAATGACCAGATTGGTCGTTTTCAGGGACTTGACATTAGTAGCAAAGGAACAGCTGTTGTAAAGTCCGAAGATCCTTCTCTTTCTGCAAGTGAAAGTAGCACAACATTTTGA

Protein sequence

>MsaT028503.1

MMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGDGGADPGGNDEAEKNPVRSRHRHSNSVDGSSSFGEIMDGKKAMPPDKLAELWSVDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTESFNLGMHQMQFTESNYAPIPPQGPSGHRNIQLPLFGHSPSSMPSHQLHQTNSHSYSELLQNDQIGRFQGLDISSKGTAVVKSEDPSLSASESSTTF*