AlfalfaGEDB | MsaG028504

M. sativa ssp. caerulea / MsaG028504

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028504	XP_003616031.1	90.741	162	15	0	1	162	1	162	4.37e-108	315

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028504	sp\|Q9FJK3\|AGL80_ARATH	38.562	153	94	0	1	153	1	153	2.02e-29	112

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028504	tr\|G7K0T4\|G7K0T4_MEDTR	90.741	162	15	0	1	162	1	162	2.09e-108	315

TFs/TRs:

Gene ID	Type	Classification
MsaG028504	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028504	MtrunA17_Chr5g0432691	90.741	162	15	0	1	162	1	162	4.02e-112	315
MsaG028504	MtrunA17_Chr3g0107381	40.625	160	95	0	1	160	1	160	2.02e-44	145
MsaG028504	MtrunA17_Chr3g0107461	42.857	154	87	1	1	153	1	154	6.08e-41	135
MsaG028504	MtrunA17_Chr4g0014321	41.875	160	92	1	1	159	1	160	8.81e-41	136
MsaG028504	MtrunA17_Chr4g0014031	44.444	162	89	1	1	161	1	162	7.11e-40	134
MsaG028504	MtrunA17_Chr3g0110131	42.138	159	92	0	1	159	1	159	5.33e-39	132
MsaG028504	MtrunA17_Chr3g0107331	42.208	154	89	0	4	157	3	156	3.70e-37	125
MsaG028504	MtrunA17_Chr3g0107351	41.667	156	91	0	5	160	4	159	1.11e-36	124
MsaG028504	MtrunA17_Chr3g0107341	42.949	156	89	0	5	160	4	159	1.83e-36	123
MsaG028504	MtrunA17_Chr3g0107361	41.667	156	91	0	5	160	4	159	4.08e-36	122
MsaG028504	MtrunA17_Chr4g0013041	40.645	155	89	2	1	154	1	153	8.83e-35	120
MsaG028504	MtrunA17_Chr2g0283941	34.810	158	102	1	1	157	1	158	1.28e-34	121
MsaG028504	MtrunA17_Chr8g0351751	38.889	162	96	2	1	159	1	162	1.39e-34	121
MsaG028504	MtrunA17_Chr1g0188651	41.026	156	89	2	1	156	1	153	3.26e-34	117
MsaG028504	MtrunA17_Chr1g0188661	39.744	156	93	1	1	156	1	155	7.62e-34	117
MsaG028504	MtrunA17_Chr1g0188681	36.538	156	98	1	1	156	1	155	9.22e-33	114
MsaG028504	MtrunA17_Chr5g0420351	34.615	156	101	1	1	156	1	155	1.57e-31	110
MsaG028504	MtrunA17_Chr4g0014131	42.593	162	92	1	1	161	1	162	1.64e-31	113
MsaG028504	MtrunA17_Chr7g0218151	38.462	156	95	1	1	156	1	155	4.19e-31	109
MsaG028504	MtrunA17_Chr4g0014121	44.156	154	85	1	1	153	29	182	5.03e-31	110
MsaG028504	MtrunA17_Chr3g0105791	39.394	132	73	2	29	156	1	129	2.85e-30	107
MsaG028504	MtrunA17_Chr4g0012761	37.179	156	97	1	1	156	1	155	4.54e-30	107
MsaG028504	MtrunA17_Chr1g0197261	34.395	157	102	1	1	157	1	156	2.81e-29	105
MsaG028504	MtrunA17_Chr1g0193311	37.179	156	97	1	1	156	1	155	3.06e-29	105
MsaG028504	MtrunA17_Chr2g0296831	45.455	121	66	0	1	121	1	121	3.26e-29	103
MsaG028504	MtrunA17_Chr1g0197461	33.117	154	102	1	4	157	3	155	3.31e-28	102
MsaG028504	MtrunA17_Chr1g0197321	34.810	158	101	2	1	157	1	157	6.01e-27	99.4
MsaG028504	MtrunA17_Chr4g0031421	37.121	132	76	2	29	156	1	129	2.49e-26	97.1
MsaG028504	MtrunA17_Chr2g0296861	34.641	153	100	0	1	153	1	153	9.06e-26	96.3
MsaG028504	MtrunA17_Chr3g0128721	32.258	155	105	0	4	158	7	161	2.23e-23	95.5
MsaG028504	MtrunA17_Chr7g0267601	33.974	156	101	2	4	158	7	161	1.02e-22	93.6
MsaG028504	MtrunA17_Chr4g0008701	32.258	155	105	0	4	158	7	161	3.76e-22	92.0
MsaG028504	MtrunA17_Chr3g0106421	33.333	126	83	1	29	153	1	126	8.33e-22	87.4
MsaG028504	MtrunA17_Chr3g0106501	30.952	126	86	1	29	153	1	126	2.13e-17	74.3
MsaG028504	MtrunA17_Chr1g0212151	32.773	119	72	4	1	112	1	118	1.62e-14	69.7
MsaG028504	MtrunA17_Chr6g0457851	32.231	121	74	4	1	114	11	130	6.97e-14	67.8
MsaG028504	MtrunA17_Chr6g0449861	31.858	113	70	3	1	107	9	120	1.87e-11	60.8
MsaG028504	MtrunA17_Chr6g0449851	29.771	131	85	3	1	125	1	130	7.64e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG028504	AT5G48670.1	38.562	153	94	0	1	153	1	153	2.05e-30	112
MsaG028504	AT1G65300.1	36.691	139	88	0	4	142	3	141	4.43e-27	103
MsaG028504	AT5G26650.1	34.615	156	102	0	4	159	2	157	1.65e-26	103
MsaG028504	AT1G65330.1	43.810	105	59	0	5	109	4	108	2.47e-26	100
MsaG028504	AT5G26630.1	33.962	159	105	0	1	159	1	159	5.85e-26	98.6
MsaG028504	AT3G05860.2	30.872	149	103	0	1	149	1	149	6.29e-26	98.2
MsaG028504	AT1G31630.1	32.692	156	104	1	4	159	3	157	1.62e-25	100
MsaG028504	AT5G27960.1	44.340	106	59	0	4	109	2	107	1.97e-25	99.4
MsaG028504	AT3G05860.3	30.872	149	103	0	1	149	1	149	5.20e-25	97.1
MsaG028504	AT3G05860.1	30.872	149	103	0	1	149	1	149	6.70e-25	97.1
MsaG028504	AT1G31640.1	33.553	152	92	4	5	152	4	150	9.63e-24	96.7
MsaG028504	AT5G27810.1	34.483	116	74	2	29	144	1	114	3.20e-20	81.3
MsaG028504	AT2G28700.1	34.862	109	71	0	1	109	1	109	6.39e-19	82.0
MsaG028504	AT5G26580.1	40.367	109	51	1	1	109	1	95	1.49e-18	81.3
MsaG028504	AT2G40210.1	40.594	101	60	0	1	101	1	101	5.74e-18	79.7
MsaG028504	AT5G06500.1	28.846	156	104	2	1	153	1	152	9.71e-16	72.4
MsaG028504	AT1G22590.2	30.435	115	80	0	1	115	1	115	1.49e-15	70.1
MsaG028504	AT2G15660.1	33.028	109	72	1	38	146	31	138	1.96e-12	63.5
MsaG028504	AT5G55690.1	36.283	113	58	4	1	105	1	107	5.69e-12	62.4
MsaG028504	AT5G55690.2	36.283	113	58	4	1	105	1	107	5.69e-12	62.4
MsaG028504	AT5G58890.1	38.182	110	61	2	1	104	1	109	8.19e-12	62.0

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAACTTCTCATTCAACTTT+TGG	0.190821	5:-63260220	None:intergenic
ATGATCTTGAACCACAAATT+TGG	0.213404	5:+63260090	MsaT028504.1:CDS
TGCTCTCCTTGCTGTGTGAT+TGG	0.345198	5:-63259973	None:intergenic
TCTCATGGTTGAACATCTTT+CGG	0.372595	5:-63260178	None:intergenic
CTTCACTTTCTTTCCTGCCA+TGG	0.385906	5:-63259937	None:intergenic
ATTTGTGGTTCAAGATCATC+TGG	0.390617	5:-63260086	None:intergenic
TGATATGAAGATGGTGCAAT+TGG	0.408742	5:+63260385	MsaT028504.1:CDS
GGAGAGCAACGTACAAGAAA+AGG	0.412101	5:+63259988	MsaT028504.1:CDS
TGAACGGATGGCCAAATTTG+TGG	0.436771	5:-63260101	None:intergenic
TGAACCGAACCAGCACACTA+TGG	0.436948	5:-63260130	None:intergenic
GGAGAAGAATGAGAGGGCTT+AGG	0.440373	5:+63260406	MsaT028504.1:CDS
CAACCATGAGACTTACTTGA+AGG	0.443462	5:+63260190	MsaT028504.1:CDS
CAAATTTGGCCATCCGTTCA+AGG	0.457472	5:+63260104	MsaT028504.1:CDS
GAGAAGAATGAGAGGGCTTA+GGG	0.460909	5:+63260407	MsaT028504.1:CDS
TTTCTCAATACCACCATGGC+AGG	0.467282	5:+63259924	None:intergenic
GAGTCCATAGTGTGCTGGTT+CGG	0.472439	5:+63260126	MsaT028504.1:CDS
TTGCATCACTATCTTGAGGC+AGG	0.484072	5:+63260287	MsaT028504.1:CDS
ATGTGATTCATGAGAAAATG+AGG	0.503498	5:+63260357	MsaT028504.1:CDS
TCTGAAGTGCTTAAATCCTC+AGG	0.504006	5:-63260317	None:intergenic
GAGAGCAACGTACAAGAAAA+GGG	0.528840	5:+63259989	MsaT028504.1:CDS
ACATGCTTGAACTCCACATA+GGG	0.545908	5:-63260048	None:intergenic
TTTCCTTCAAGTAAGTCTCA+TGG	0.546071	5:-63260193	None:intergenic
TGCAATTGGAGAAGAATGAG+AGG	0.550028	5:+63260399	MsaT028504.1:CDS
CTATGGACTCCTTGAACGGA+TGG	0.558436	5:-63260113	None:intergenic
AATGAAATCACAACCCTATG+TGG	0.562718	5:+63260035	MsaT028504.1:CDS
CACACTATGGACTCCTTGAA+CGG	0.564303	5:-63260117	None:intergenic
ATGAGACTTACTTGAAGGAA+AGG	0.565276	5:+63260195	MsaT028504.1:CDS
TCAAGGAGTCCATAGTGTGC+TGG	0.565483	5:+63260121	MsaT028504.1:CDS
GAGGGAAATTGATATGAAGA+TGG	0.575041	5:+63260376	MsaT028504.1:CDS
TGAAGGAGAATAGGATGATG+TGG	0.587839	5:+63260252	MsaT028504.1:CDS
TGCATCACTATCTTGAGGCA+GGG	0.606928	5:+63260288	MsaT028504.1:CDS
CACATGCTTGAACTCCACAT+AGG	0.630810	5:-63260049	None:intergenic
TCAATTGCATCACTATCTTG+AGG	0.632807	5:+63260283	MsaT028504.1:CDS
TGTGATTCATGAGAAAATGA+GGG	0.634781	5:+63260358	MsaT028504.1:CDS
TGAGGCAGGGAATGTTCCTG+AGG	0.646378	5:+63260301	MsaT028504.1:CDS
TCATAACCAATCACACAGCA+AGG	0.650603	5:+63259967	MsaT028504.1:CDS
CTATGTGGAGTTCAAGCATG+TGG	0.662987	5:+63260050	MsaT028504.1:CDS
GCAATTGGAGAAGAATGAGA+GGG	0.674364	5:+63260400	MsaT028504.1:CDS
GGTTCGGTTCATGCATACTG+CGG	0.703185	5:+63260142	MsaT028504.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	63259939	63260427	63259939	ID=MsaG028504
Chr5	mRNA	63259939	63260427	63259939	ID=MsaT028504.1;Parent=MsaG028504
Chr5	exon	63259939	63260427	63259939	ID=MsaT028504.1.exon1;Parent=MsaT028504.1
Chr5	CDS	63259939	63260427	63259939	ID=cds.MsaT028504.1;Parent=MsaT028504.1

Gene Sequence

>MsaT028504.1

ATGGCAGGAAAGAAAGTGAAGCTTGCATTCATAACCAATCACACAGCAAGGAGAGCAACGTACAAGAAAAGGGTACAAAGTTTGATGAAGAAGCTCAATGAAATCACAACCCTATGTGGAGTTCAAGCATGTGGTATAGTTTTCAAGCCAGATGATCTTGAACCACAAATTTGGCCATCCGTTCAAGGAGTCCATAGTGTGCTGGTTCGGTTCATGCATACTGCGGACTTCGATCGAGACCGAAAGATGTTCAACCATGAGACTTACTTGAAGGAAAGGATCCAAAAGTTGAATGAGAAGTTGAAGAAAAAAGTGAAGGAGAATAGGATGATGTGGATGAGTGTTCAATTGCATCACTATCTTGAGGCAGGGAATGTTCCTGAGGATTTAAGCACTTCAGATATGAATGATCTCACATATGTGATTCATGAGAAAATGAGGGAAATTGATATGAAGATGGTGCAATTGGAGAAGAATGAGAGGGCTTAG

Protein sequence

>MsaT028504.1

MAGKKVKLAFITNHTARRATYKKRVQSLMKKLNEITTLCGVQACGIVFKPDDLEPQIWPSVQGVHSVLVRFMHTADFDRDRKMFNHETYLKERIQKLNEKLKKKVKENRMMWMSVQLHHYLEAGNVPEDLSTSDMNDLTYVIHEKMREIDMKMVQLEKNERA*